RNA–Protein interactions for RNA: ENST00000434453.1

LMBR1-209, Transcript of limb development membrane protein 1, human

TSL 5

Gene LMBR1, Length 2,229 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMBR1-209	ENST00000434453	EXOC6	Q8TAG9	804 aa		33.16	■■■□□ 2.9
LMBR1-209	ENST00000434453	UGGT1	Q9NYU2	1555 aa		33.15	■■■□□ 2.9
LMBR1-209	ENST00000434453	KIDINS220	Q9ULH0	1771 aa		33.12	■■■□□ 2.89
LMBR1-209	ENST00000434453	KNSTRN	Q9Y448	316 aa		33.12	■■■□□ 2.89
LMBR1-209	ENST00000434453	ASXL2	Q76L83	1435 aa		33.11	■■■□□ 2.89
LMBR1-209	ENST00000434453	PPP2R1A	P30153	589 aa		33.11	■■■□□ 2.89
LMBR1-209	ENST00000434453	MAP3K4	Q9Y6R4	1608 aa		33.11	■■■□□ 2.89
LMBR1-209	ENST00000434453	ADAMTS8	Q9UP79	889 aa		33.1	■■■□□ 2.89
LMBR1-209	ENST00000434453	ABCA6	Q8N139	1617 aa		33.1	■■■□□ 2.89
LMBR1-209	ENST00000434453	KIF1B	O60333	1816 aa		33.09	■■■□□ 2.89
LMBR1-209	ENST00000434453	IFT172	Q9UG01	1749 aa		33.09	■■■□□ 2.89
LMBR1-209	ENST00000434453	CDCA8	Q53HL2	280 aa		33.09	■■■□□ 2.89
LMBR1-209	ENST00000434453	EFCAB6	Q5THR3	1501 aa		33.09	■■■□□ 2.89
LMBR1-209	ENST00000434453	ASXL1	Q8IXJ9	1541 aa		33.08	■■■□□ 2.89
LMBR1-209	ENST00000434453	MYOM2	P54296	1465 aa		33.07	■■■□□ 2.89
LMBR1-209	ENST00000434453	PPRC1	Q5VV67	1664 aa	Known RBP	33.06	■■■□□ 2.88
LMBR1-209	ENST00000434453	KDM5A	P29375	1690 aa	Known RBP	33.06	■■■□□ 2.88
LMBR1-209	ENST00000434453	MYT1L	Q9UL68	1186 aa		33.05	■■■□□ 2.88
LMBR1-209	ENST00000434453	MROH2A	A6NES4	1674 aa		33.05	■■■□□ 2.88
LMBR1-209	ENST00000434453	EIF3A	Q14152	1382 aa	Known RBP	33.05	■■■□□ 2.88
LMBR1-209	ENST00000434453	CFAP70	Q5T0N1	1121 aa		33.02	■■■□□ 2.88
LMBR1-209	ENST00000434453	ADGRF5	Q8IZF2	1346 aa		33.02	■■■□□ 2.88
LMBR1-209	ENST00000434453	NPC1L1	Q9UHC9	1359 aa		33.01	■■■□□ 2.87
LMBR1-209	ENST00000434453	ERICH6	Q7L0X2	663 aa		33.01	■■■□□ 2.87
LMBR1-209	ENST00000434453	PIK3C2G	O75747	1445 aa		32.99	■■■□□ 2.87
LMBR1-209	ENST00000434453	ERVK-7	P63135	1459 aa		32.99	■■■□□ 2.87
LMBR1-209	ENST00000434453	PLEKHH1	Q9ULM0	1364 aa		32.98	■■■□□ 2.87
LMBR1-209	ENST00000434453	PLIN1	O60240	522 aa		32.98	■■■□□ 2.87
LMBR1-209	ENST00000434453	LMTK2	Q8IWU2	1503 aa		32.98	■■■□□ 2.87
LMBR1-209	ENST00000434453	NRXN1	Q9ULB1	1477 aa		32.96	■■■□□ 2.87
LMBR1-209	ENST00000434453	ZNF518A	Q6AHZ1	1483 aa		32.95	■■■□□ 2.87
LMBR1-209	ENST00000434453	ZNF521	Q96K83	1311 aa		32.93	■■■□□ 2.86
LMBR1-209	ENST00000434453	WDR43	Q15061	677 aa	Known RBP eCLIP	32.93	■■■□□ 2.86
LMBR1-209	ENST00000434453	MYO3A	Q8NEV4	1616 aa		32.92	■■■□□ 2.86
LMBR1-209	ENST00000434453	ADGRB3	O60242	1522 aa		32.9	■■■□□ 2.86
LMBR1-209	ENST00000434453	CFAP65	Q6ZU64	1925 aa	Known RBP	32.89	■■■□□ 2.86
LMBR1-209	ENST00000434453	FRMPD1	Q5SYB0	1578 aa		32.88	■■■□□ 2.85
LMBR1-209	ENST00000434453	DUSP27	Q5VZP5	1158 aa		32.87	■■■□□ 2.85
LMBR1-209	ENST00000434453	CRBN	Q96SW2	442 aa		32.86	■■■□□ 2.85
LMBR1-209	ENST00000434453	CARD14	Q9BXL6	1004 aa		32.86	■■■□□ 2.85
LMBR1-209	ENST00000434453	NOP58	Q9Y2X3	529 aa	Known RBP	32.86	■■■□□ 2.85
LMBR1-209	ENST00000434453	PAK3	O75914	559 aa	Predicted RBP	32.85	■■■□□ 2.85
LMBR1-209	ENST00000434453	NOS1	P29475	1434 aa		32.84	■■■□□ 2.85
LMBR1-209	ENST00000434453	PPL	O60437	1756 aa		32.83	■■■□□ 2.85
LMBR1-209	ENST00000434453	SETBP1	Q9Y6X0	1596 aa		32.82	■■■□□ 2.85
LMBR1-209	ENST00000434453	NPAT	Q14207	1427 aa		32.82	■■■□□ 2.85
LMBR1-209	ENST00000434453	POGZ	Q7Z3K3	1410 aa		32.82	■■■□□ 2.85
LMBR1-209	ENST00000434453	TCERG1	O14776	1098 aa	Known RBP	32.82	■■■□□ 2.85
LMBR1-209	ENST00000434453	OSCAR	Q8IYS5	282 aa		32.82	■■■□□ 2.85
LMBR1-209	ENST00000434453	SBNO2	Q9Y2G9	1366 aa		32.82	■■■□□ 2.84
LMBR1-209	ENST00000434453	SLC24A1	O60721	1099 aa		32.82	■■■□□ 2.84
LMBR1-209	ENST00000434453	C20orf194	Q5TEA3	1177 aa		32.82	■■■□□ 2.84
LMBR1-209	ENST00000434453	MLH3	Q9UHC1	1453 aa		32.79	■■■□□ 2.84
LMBR1-209	ENST00000434453	ANP32A	P39687	249 aa	Known RBP	32.78	■■■□□ 2.84
LMBR1-209	ENST00000434453	IPO9	Q96P70	1041 aa	Known RBP	32.78	■■■□□ 2.84
LMBR1-209	ENST00000434453	CFAP74	Q9C0B2	1584 aa		32.78	■■■□□ 2.84
LMBR1-209	ENST00000434453	GOLGA2	Q08379	1002 aa		32.78	■■■□□ 2.84
LMBR1-209	ENST00000434453	ZC3H13	Q5T200	1668 aa	Known RBP	32.78	■■■□□ 2.84
LMBR1-209	ENST00000434453	CD109	Q6YHK3	1445 aa		32.77	■■■□□ 2.84
LMBR1-209	ENST00000434453	HECW2	Q9P2P5	1572 aa		32.76	■■■□□ 2.84
LMBR1-209	ENST00000434453	CCDC146	Q8IYE0	955 aa		32.76	■■■□□ 2.83
LMBR1-209	ENST00000434453	SLFN5	Q08AF3	891 aa		32.74	■■■□□ 2.83
LMBR1-209	ENST00000434453	ADGRB1	O14514	1584 aa		32.74	■■■□□ 2.83
LMBR1-209	ENST00000434453	TRMT2A	Q8IZ69	625 aa	Known RBP	32.73	■■■□□ 2.83
LMBR1-209	ENST00000434453	CENPJ	Q9HC77	1338 aa	Predicted RBP	32.72	■■■□□ 2.83
LMBR1-209	ENST00000434453	MS4A1	P11836	297 aa		32.71	■■■□□ 2.83
LMBR1-209	ENST00000434453	QRICH2	Q9H0J4	1663 aa		32.71	■■■□□ 2.83
LMBR1-209	ENST00000434453	CHGA	P10645	457 aa	Known RBP	32.71	■■■□□ 2.83
LMBR1-209	ENST00000434453	PDE4A	P27815	886 aa		32.71	■■■□□ 2.83
LMBR1-209	ENST00000434453	ABCC3	O15438	1527 aa		32.7	■■■□□ 2.82
LMBR1-209	ENST00000434453	NPM1	P06748	294 aa	Known RBP eCLIP	32.7	■■■□□ 2.82
LMBR1-209	ENST00000434453	C14orf93	Q9H972	538 aa	Known RBP	32.7	■■■□□ 2.82
LMBR1-209	ENST00000434453	APAF1	O14727	1248 aa		32.69	■■■□□ 2.82
LMBR1-209	ENST00000434453	GGT6	Q6P531	493 aa		32.69	■■■□□ 2.82
LMBR1-209	ENST00000434453	BACH2	Q9BYV9	841 aa		32.69	■■■□□ 2.82
LMBR1-209	ENST00000434453	SPINK5	Q9NQ38	1064 aa	Predicted RBP	32.69	■■■□□ 2.82
LMBR1-209	ENST00000434453	SIGLEC1	Q9BZZ2	1709 aa		32.68	■■■□□ 2.82
LMBR1-209	ENST00000434453	SKAP1	Q86WV1	359 aa		32.67	■■■□□ 2.82
LMBR1-209	ENST00000434453	TRAK1	Q9UPV9	953 aa		32.66	■■■□□ 2.82
LMBR1-209	ENST00000434453	KDM2B	Q8NHM5	1336 aa		32.65	■■■□□ 2.82
LMBR1-209	ENST00000434453	CAMSAP1	Q5T5Y3	1602 aa		32.64	■■■□□ 2.82
LMBR1-209	ENST00000434453	POLR3A	O14802	1390 aa	Predicted RBP	32.62	■■■□□ 2.81
LMBR1-209	ENST00000434453	SHPRH	Q149N8	1683 aa		32.62	■■■□□ 2.81
LMBR1-209	ENST00000434453	TMEM132E	Q6IEE7	984 aa		32.61	■■■□□ 2.81
LMBR1-209	ENST00000434453	NSD3	Q9BZ95	1437 aa		32.61	■■■□□ 2.81
LMBR1-209	ENST00000434453	PIK3C2B	O00750	1634 aa		32.6	■■■□□ 2.81
LMBR1-209	ENST00000434453	DMRT2	Q9Y5R5	561 aa		32.6	■■■□□ 2.81
LMBR1-209	ENST00000434453	NKTR	P30414	1462 aa	Known RBP	32.6	■■■□□ 2.81
LMBR1-209	ENST00000434453	RPGRIP1L	Q68CZ1	1315 aa		32.58	■■■□□ 2.81
LMBR1-209	ENST00000434453	SLC12A5	Q9H2X9	1139 aa		32.58	■■■□□ 2.81
LMBR1-209	ENST00000434453	ZBTB47	Q9UFB7	747 aa	Predicted RBP	32.58	■■■□□ 2.81
LMBR1-209	ENST00000434453	GLI2	P10070	1586 aa		32.55	■■■□□ 2.8
LMBR1-209	ENST00000434453	USP32	Q8NFA0	1604 aa		32.54	■■■□□ 2.8
LMBR1-209	ENST00000434453	NPM2	Q86SE8	214 aa	Known RBP	32.54	■■■□□ 2.8
LMBR1-209	ENST00000434453	RAPGEF3	O95398	923 aa		32.54	■■■□□ 2.8
LMBR1-209	ENST00000434453	ARHGEF28	Q8N1W1	1705 aa	Known RBP	32.53	■■■□□ 2.8
LMBR1-209	ENST00000434453	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	32.53	■■■□□ 2.8
LMBR1-209	ENST00000434453	DIP2C	Q9Y2E4	1556 aa		32.53	■■■□□ 2.8
LMBR1-209	ENST00000434453	NEXMIF	Q5QGS0	1516 aa		32.53	■■■□□ 2.8
LMBR1-209	ENST00000434453		E9PSI1	815 aa		32.53	■■■□□ 2.8

Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms