RNA–Protein interactions for RNA: ENST00000427534.6

SPG11-202, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 6,935 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-202ENST00000427534 PMFBP1Q8TBY8 1022 aa16.29■□□□□ 0.2
SPG11-202ENST00000427534 FANCD2Q9BXW9 1451 aa16.29■□□□□ 0.2
SPG11-202ENST00000427534 AKAP17AQ02040 695 aaKnown RBP16.29■□□□□ 0.2
SPG11-202ENST00000427534 NLRP2Q9NX02 1062 aa16.29■□□□□ 0.2
SPG11-202ENST00000427534 TPM4P67936 248 aa16.29■□□□□ 0.2
SPG11-202ENST00000427534 CCAR2Q8N163 923 aaKnown RBP16.29■□□□□ 0.2
SPG11-202ENST00000427534 FAM184AQ8NB25 1140 aa16.29■□□□□ 0.2
SPG11-202ENST00000427534 CEP89Q96ST8 783 aa16.29■□□□□ 0.2
SPG11-202ENST00000427534 RBM33Q96EV2 1170 aaKnown RBP16.27■□□□□ 0.2
SPG11-202ENST00000427534 TMEM132EQ6IEE7 984 aa16.26■□□□□ 0.19
SPG11-202ENST00000427534 PCMTD1Q96MG8 357 aaPredicted RBP16.26■□□□□ 0.19
SPG11-202ENST00000427534 COG6Q9Y2V7 657 aa16.26■□□□□ 0.19
SPG11-202ENST00000427534 RBM42Q9BTD8 480 aaKnown RBP16.26■□□□□ 0.19
SPG11-202ENST00000427534 CABP2Q9NPB3 220 aa16.26■□□□□ 0.19
SPG11-202ENST00000427534 IBSPP21815 317 aaPredicted RBP16.25■□□□□ 0.19
SPG11-202ENST00000427534 NEUROD6Q96NK8 337 aa16.25■□□□□ 0.19
SPG11-202ENST00000427534 ANO2Q9NQ90 1003 aa16.25■□□□□ 0.19
SPG11-202ENST00000427534 PDE3BQ13370 1112 aa16.24■□□□□ 0.19
SPG11-202ENST00000427534 HTATSF1O43719 755 aaKnown RBP16.24■□□□□ 0.19
SPG11-202ENST00000427534 CCDC144AA2RUR9 1427 aa16.24■□□□□ 0.19
SPG11-202ENST00000427534 NFXL1Q6ZNB6 911 aa16.24■□□□□ 0.19
SPG11-202ENST00000427534 KIF15Q9NS87 1388 aa16.24■□□□□ 0.19
SPG11-202ENST00000427534 OSCARQ8IYS5 282 aa16.23■□□□□ 0.19
SPG11-202ENST00000427534 NEXNQ0ZGT2 675 aa16.23■□□□□ 0.19
SPG11-202ENST00000427534 ESCO1Q5FWF5 840 aa16.23■□□□□ 0.19
SPG11-202ENST00000427534 LMOD3Q0VAK6 560 aa16.22■□□□□ 0.19
SPG11-202ENST00000427534 AMOTL1Q8IY63 956 aa16.22■□□□□ 0.19
SPG11-202ENST00000427534 PRDM2Q13029 1718 aa16.22■□□□□ 0.19
SPG11-202ENST00000427534 XPCQ01831 940 aaPredicted RBP16.22■□□□□ 0.19
SPG11-202ENST00000427534 FKBP5Q13451 457 aaPredicted RBP16.22■□□□□ 0.19
SPG11-202ENST00000427534 MYBBP1AQ9BQG0 1328 aaKnown RBP16.22■□□□□ 0.19
SPG11-202ENST00000427534 IKQ13123 557 aaPredicted RBP16.21■□□□□ 0.19
SPG11-202ENST00000427534 PHLDB1Q86UU1 1377 aa16.21■□□□□ 0.19
SPG11-202ENST00000427534 RIPK4P57078 832 aa16.21■□□□□ 0.19
SPG11-202ENST00000427534 DIAPH3Q9NSV4 1193 aa16.21■□□□□ 0.19
SPG11-202ENST00000427534 PTPRGP23470 1445 aa16.21■□□□□ 0.18
SPG11-202ENST00000427534 GGNBP2Q9H3C7 697 aa16.21■□□□□ 0.18
SPG11-202ENST00000427534 SYNE3Q6ZMZ3 975 aa16.2■□□□□ 0.18
SPG11-202ENST00000427534 APAF1O14727 1248 aa16.2■□□□□ 0.18
SPG11-202ENST00000427534 IFIT2P09913 472 aaKnown RBP16.2■□□□□ 0.18
SPG11-202ENST00000427534 RIC3Q7Z5B4 369 aa16.2■□□□□ 0.18
SPG11-202ENST00000427534 CRBNQ96SW2 442 aa16.2■□□□□ 0.18
SPG11-202ENST00000427534 EVC2Q86UK5 1308 aa16.19■□□□□ 0.18
SPG11-202ENST00000427534 TSPYL4Q9UJ04 414 aa16.19■□□□□ 0.18
SPG11-202ENST00000427534 IGF1RP08069 1367 aa16.18■□□□□ 0.18
SPG11-202ENST00000427534 DDX54Q8TDD1 881 aaKnown RBP16.18■□□□□ 0.18
SPG11-202ENST00000427534 DCAF8L1A6NGE4 600 aa16.17■□□□□ 0.18
SPG11-202ENST00000427534 ZNF592Q92610 1267 aa16.17■□□□□ 0.18
SPG11-202ENST00000427534 WASHC4Q2M389 1173 aa16.17■□□□□ 0.18
SPG11-202ENST00000427534 EXOC6Q8TAG9 804 aa16.17■□□□□ 0.18
SPG11-202ENST00000427534 CHMP4AQ9BY43 222 aa16.17■□□□□ 0.18
SPG11-202ENST00000427534 RAPGEF4Q8WZA2 1011 aa16.17■□□□□ 0.18
SPG11-202ENST00000427534 CGNL1Q0VF96 1302 aa16.17■□□□□ 0.18
SPG11-202ENST00000427534 TSHZ2Q9NRE2 1034 aa16.17■□□□□ 0.18
SPG11-202ENST00000427534 SYAP1Q96A49 352 aaPredicted RBP16.17■□□□□ 0.18
SPG11-202ENST00000427534 ST18O60284 1047 aa16.16■□□□□ 0.18
SPG11-202ENST00000427534 CCDC43Q96MW1 224 aaKnown RBP16.16■□□□□ 0.18
SPG11-202ENST00000427534 PRKRIP1Q9H875 184 aaPredicted RBP16.16■□□□□ 0.18
SPG11-202ENST00000427534 ZNF644Q9H582 1327 aaPredicted RBP16.16■□□□□ 0.18
SPG11-202ENST00000427534 TPM3P06753 285 aa16.16■□□□□ 0.18
SPG11-202ENST00000427534 ATP2B2Q01814 1243 aa16.15■□□□□ 0.18
SPG11-202ENST00000427534 SPINK5Q9NQ38 1064 aaPredicted RBP16.15■□□□□ 0.18
SPG11-202ENST00000427534 VGFO15240 615 aaPredicted RBP16.15■□□□□ 0.18
SPG11-202ENST00000427534 DIAPH1O60610 1272 aaKnown RBP16.15■□□□□ 0.18
SPG11-202ENST00000427534 FGD5Q6ZNL6 1462 aa16.15■□□□□ 0.18
SPG11-202ENST00000427534 FAM161AQ3B820 660 aa16.15■□□□□ 0.18
SPG11-202ENST00000427534 USP47Q96K76 1375 aa16.14■□□□□ 0.17
SPG11-202ENST00000427534 UACAQ9BZF9 1416 aa16.14■□□□□ 0.17
SPG11-202ENST00000427534 GOLGA6L3A6NEY3 463 aa16.14■□□□□ 0.17
SPG11-202ENST00000427534 ABTB2Q8N961 1025 aa16.14■□□□□ 0.17
SPG11-202ENST00000427534 TRIM29Q14134 588 aa16.13■□□□□ 0.17
SPG11-202ENST00000427534 NLRP6P59044 892 aa16.13■□□□□ 0.17
SPG11-202ENST00000427534 CCDC34Q96HJ3 373 aa16.13■□□□□ 0.17
SPG11-202ENST00000427534 BICDL1Q6ZP65 573 aa16.13■□□□□ 0.17
SPG11-202ENST00000427534 G3BP1Q13283 466 aaKnown RBP eCLIP16.12■□□□□ 0.17
SPG11-202ENST00000427534 CPLX1O14810 134 aa16.12■□□□□ 0.17
SPG11-202ENST00000427534 GAPVD1Q14C86 1478 aa16.12■□□□□ 0.17
SPG11-202ENST00000427534 TMEM132AQ24JP5 1023 aa16.12■□□□□ 0.17
SPG11-202ENST00000427534 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.12■□□□□ 0.17
SPG11-202ENST00000427534 DNAJC2Q99543 621 aaKnown RBP16.12■□□□□ 0.17
SPG11-202ENST00000427534 HDAC5Q9UQL6 1122 aa16.11■□□□□ 0.17
SPG11-202ENST00000427534 SF3B2Q13435 895 aaKnown RBP16.11■□□□□ 0.17
SPG11-202ENST00000427534 RAD54L2Q9Y4B4 1467 aa16.11■□□□□ 0.17
SPG11-202ENST00000427534 CCAR1Q8IX12 1150 aaKnown RBP16.11■□□□□ 0.17
SPG11-202ENST00000427534 RRP12Q5JTH9 1297 aaKnown RBP16.11■□□□□ 0.17
SPG11-202ENST00000427534 IPO9Q96P70 1041 aaKnown RBP16.1■□□□□ 0.17
SPG11-202ENST00000427534 PROSER2Q86WR7 435 aaPredicted RBP16.1■□□□□ 0.17
SPG11-202ENST00000427534 MAP4K4O95819 1239 aaPredicted RBP16.1■□□□□ 0.17
SPG11-202ENST00000427534 ATP2B1P20020 1258 aa16.1■□□□□ 0.17
SPG11-202ENST00000427534 ZKSCAN2Q63HK3 967 aa16.1■□□□□ 0.17
SPG11-202ENST00000427534 VPS37CA5D8V6 355 aaPredicted RBP16.09■□□□□ 0.17
SPG11-202ENST00000427534 RBM5P52756 815 aaKnown RBP eCLIP16.09■□□□□ 0.17
SPG11-202ENST00000427534 ERICH2A1L162 156 aa16.09■□□□□ 0.17
SPG11-202ENST00000427534 PTMSP20962 102 aa16.09■□□□□ 0.17
SPG11-202ENST00000427534 TXNDC2Q86VQ3 553 aa16.09■□□□□ 0.17
SPG11-202ENST00000427534 GOLGA6L1Q8N7Z2 621 aa16.09■□□□□ 0.17
SPG11-202ENST00000427534 C1orf115Q9H7X2 142 aa16.09■□□□□ 0.17
SPG11-202ENST00000427534 MYOM3Q5VTT5 1437 aa16.08■□□□□ 0.17
SPG11-202ENST00000427534 TSR1Q2NL82 804 aaKnown RBP16.08■□□□□ 0.17
SPG11-202ENST00000427534 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.08■□□□□ 0.171e-8■■■■■ 115.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms