RNA–Protein interactions for RNA: ENST00000427191.6

PTPN13-203, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,487 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-203ENST00000427191 GTF2E1P29083 439 aaPredicted RBP17.53■□□□□ 0.4
PTPN13-203ENST00000427191 MCTP1Q6DN14 999 aa17.53■□□□□ 0.4
PTPN13-203ENST00000427191 FANCIQ9NVI1 1328 aa17.53■□□□□ 0.4
PTPN13-203ENST00000427191 CCDC39Q9UFE4 941 aa17.53■□□□□ 0.4
PTPN13-203ENST00000427191 DDX19BQ9UMR2 479 aa17.53■□□□□ 0.4
PTPN13-203ENST00000427191 CUX2O14529 1486 aa17.53■□□□□ 0.4
PTPN13-203ENST00000427191 ZBED9Q6R2W3 1325 aa17.52■□□□□ 0.4
PTPN13-203ENST00000427191 SAFBQ15424 915 aaKnown RBP eCLIP17.52■□□□□ 0.4
PTPN13-203ENST00000427191 CT47A1Q5JQC4 288 aaPredicted RBP17.52■□□□□ 0.4
PTPN13-203ENST00000427191 CHMP5Q9NZZ3 219 aa17.51■□□□□ 0.39
PTPN13-203ENST00000427191 NOL8Q76FK4 1167 aaKnown RBP17.51■□□□□ 0.39
PTPN13-203ENST00000427191 CTDP1Q9Y5B0 961 aaPredicted RBP17.51■□□□□ 0.39
PTPN13-203ENST00000427191 CCDC43Q96MW1 224 aaKnown RBP17.51■□□□□ 0.39
PTPN13-203ENST00000427191 ERICH2A1L162 156 aa17.51■□□□□ 0.39
PTPN13-203ENST00000427191 AMPHP49418 695 aa17.51■□□□□ 0.39
PTPN13-203ENST00000427191 SAFB2Q14151 953 aaKnown RBP eCLIP17.5■□□□□ 0.39
PTPN13-203ENST00000427191 TSHZ2Q9NRE2 1034 aa17.5■□□□□ 0.39
PTPN13-203ENST00000427191 TXLNBQ8N3L3 684 aa17.5■□□□□ 0.39
PTPN13-203ENST00000427191 STK26Q9P289 416 aa17.5■□□□□ 0.39
PTPN13-203ENST00000427191 RAB3GAP2Q9H2M9 1393 aa17.5■□□□□ 0.39
PTPN13-203ENST00000427191 CCDC73Q6ZRK6 1079 aa17.5■□□□□ 0.39
PTPN13-203ENST00000427191 BRMS1Q9HCU9 246 aa17.5■□□□□ 0.39
PTPN13-203ENST00000427191 CAGE1Q8TC20 777 aa17.5■□□□□ 0.39
PTPN13-203ENST00000427191 RILPL2Q969X0 211 aa17.5■□□□□ 0.39
PTPN13-203ENST00000427191 MPHOSPH9Q99550 1183 aa17.5■□□□□ 0.39
PTPN13-203ENST00000427191 H0YHG0 523 aa17.49■□□□□ 0.39
PTPN13-203ENST00000427191 HSP90AB4PQ58FF6 505 aa17.49■□□□□ 0.39
PTPN13-203ENST00000427191 OLFM4Q6UX06 510 aa17.49■□□□□ 0.39
PTPN13-203ENST00000427191 BICD2Q8TD16 824 aa17.49■□□□□ 0.39
PTPN13-203ENST00000427191 HMGN5P82970 282 aaKnown RBP17.48■□□□□ 0.39
PTPN13-203ENST00000427191 EPS15P42566 896 aa17.48■□□□□ 0.39
PTPN13-203ENST00000427191 PDE4AP27815 886 aa17.47■□□□□ 0.39
PTPN13-203ENST00000427191 ANKRD45Q5TZF3 282 aa17.47■□□□□ 0.39
PTPN13-203ENST00000427191 GGT6Q6P531 493 aa17.47■□□□□ 0.39
PTPN13-203ENST00000427191 GOLGA6L7A0A1B0GV03 622 aa17.47■□□□□ 0.39
PTPN13-203ENST00000427191 PIP4K2AP48426 406 aaPredicted RBP17.47■□□□□ 0.39
PTPN13-203ENST00000427191 INTS3Q68E01 1043 aaKnown RBP17.47■□□□□ 0.39
PTPN13-203ENST00000427191 XBP1P17861 261 aa17.47■□□□□ 0.39
PTPN13-203ENST00000427191 C1orf141Q5JVX7 400 aa17.47■□□□□ 0.39
PTPN13-203ENST00000427191 EFCAB2Q5VUJ9 269 aa17.46■□□□□ 0.39
PTPN13-203ENST00000427191 FOXD4L1Q9NU39 408 aa17.46■□□□□ 0.39
PTPN13-203ENST00000427191 SMARCA2P51531 1590 aa17.46■□□□□ 0.39
PTPN13-203ENST00000427191 NINLQ9Y2I6 1382 aa17.46■□□□□ 0.39
PTPN13-203ENST00000427191 ERC2O15083 957 aa17.45■□□□□ 0.38
PTPN13-203ENST00000427191 IFT57Q9NWB7 429 aa17.45■□□□□ 0.38
PTPN13-203ENST00000427191 DDX58O95786 925 aaKnown RBP17.45■□□□□ 0.38
PTPN13-203ENST00000427191 ANKRD18AQ8IVF6 992 aa17.45■□□□□ 0.38
PTPN13-203ENST00000427191 FAM13BQ9NYF5 915 aa17.45■□□□□ 0.38
PTPN13-203ENST00000427191 CCDC144AA2RUR9 1427 aa17.44■□□□□ 0.38
PTPN13-203ENST00000427191 SMARCE1Q969G3 411 aa17.44■□□□□ 0.38
PTPN13-203ENST00000427191 ERLIN2O94905 339 aa17.44■□□□□ 0.38
PTPN13-203ENST00000427191 NAP1L1P55209 391 aaKnown RBP17.43■□□□□ 0.38
PTPN13-203ENST00000427191 NGDNQ8NEJ9 315 aaKnown RBP17.43■□□□□ 0.38
PTPN13-203ENST00000427191 CAVIN1Q6NZI2 390 aaKnown RBP17.43■□□□□ 0.38
PTPN13-203ENST00000427191 LEKR1Q6ZMV7 388 aa17.43■□□□□ 0.38
PTPN13-203ENST00000427191 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.43■□□□□ 0.38
PTPN13-203ENST00000427191 ANO2Q9NQ90 1003 aa17.43■□□□□ 0.38
PTPN13-203ENST00000427191 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.43■□□□□ 0.38
PTPN13-203ENST00000427191 API5Q9BZZ5 524 aaKnown RBP17.43■□□□□ 0.38
PTPN13-203ENST00000427191 LUC7LQ9NQ29 371 aaKnown RBP17.43■□□□□ 0.38
PTPN13-203ENST00000427191 RRP1P56182 461 aaKnown RBP17.43■□□□□ 0.38
PTPN13-203ENST00000427191 SMC3Q9UQE7 1217 aa17.42■□□□□ 0.38
PTPN13-203ENST00000427191 IFIT2P09913 472 aaKnown RBP17.42■□□□□ 0.38
PTPN13-203ENST00000427191 MRE11P49959 708 aa17.42■□□□□ 0.38
PTPN13-203ENST00000427191 C9orf78Q9NZ63 289 aaPredicted RBP17.42■□□□□ 0.38
PTPN13-203ENST00000427191 CNKSR2Q8WXI2 1034 aa17.42■□□□□ 0.38
PTPN13-203ENST00000427191 R3HCC1Q9Y3T6 440 aaKnown RBP17.42■□□□□ 0.38
PTPN13-203ENST00000427191 CLUAP1Q96AJ1 413 aa17.41■□□□□ 0.38
PTPN13-203ENST00000427191 INCENPQ9NQS7 918 aa17.41■□□□□ 0.38
PTPN13-203ENST00000427191 MBD3O95983 291 aa17.41■□□□□ 0.38
PTPN13-203ENST00000427191 OFD1O75665 1012 aa17.41■□□□□ 0.38
PTPN13-203ENST00000427191 PSMA5P28066 241 aa17.41■□□□□ 0.38
PTPN13-203ENST00000427191 HSP90AB2PQ58FF8 381 aa17.41■□□□□ 0.38
PTPN13-203ENST00000427191 EVC2Q86UK5 1308 aa17.41■□□□□ 0.38
PTPN13-203ENST00000427191 FOXD4L5Q5VV16 416 aaPredicted RBP17.4■□□□□ 0.38
PTPN13-203ENST00000427191 FOXD4L4Q8WXT5 416 aaPredicted RBP17.4■□□□□ 0.38
PTPN13-203ENST00000427191 PDCP20941 246 aa17.4■□□□□ 0.38
PTPN13-203ENST00000427191 USP8P40818 1118 aa17.4■□□□□ 0.38
PTPN13-203ENST00000427191 MCM2P49736 904 aa17.4■□□□□ 0.38
PTPN13-203ENST00000427191 GOLGA6L10A6NI86 522 aa17.4■□□□□ 0.38
PTPN13-203ENST00000427191 TTC5Q8N0Z6 440 aa17.4■□□□□ 0.38
PTPN13-203ENST00000427191 WASHC2AQ641Q2 1341 aa17.39■□□□□ 0.37
PTPN13-203ENST00000427191 RABEP1Q15276 862 aa17.39■□□□□ 0.37
PTPN13-203ENST00000427191 APPP05067 770 aa17.38■□□□□ 0.37
PTPN13-203ENST00000427191 VPS37DQ86XT2 251 aa17.38■□□□□ 0.37
PTPN13-203ENST00000427191 TAF3Q5VWG9 929 aa17.38■□□□□ 0.37
PTPN13-203ENST00000427191 NFXL1Q6ZNB6 911 aa17.38■□□□□ 0.37
PTPN13-203ENST00000427191 NASPP49321 788 aaPredicted RBP17.38■□□□□ 0.37
PTPN13-203ENST00000427191 COG3Q96JB2 828 aa17.38■□□□□ 0.37
PTPN13-203ENST00000427191 IQCEQ6IPM2 695 aa17.37■□□□□ 0.37
PTPN13-203ENST00000427191 TEFQ10587 303 aa17.37■□□□□ 0.37
PTPN13-203ENST00000427191 RALYLQ86SE5 291 aaKnown RBP17.36■□□□□ 0.37
PTPN13-203ENST00000427191 PDS5BQ9NTI5 1447 aa17.36■□□□□ 0.37
PTPN13-203ENST00000427191 FILIP1LQ4L180 1135 aa17.36■□□□□ 0.37
PTPN13-203ENST00000427191 G3BP1Q13283 466 aaKnown RBP eCLIP17.35■□□□□ 0.37
PTPN13-203ENST00000427191 HIP1O00291 1037 aa17.35■□□□□ 0.37
PTPN13-203ENST00000427191 CCDC146Q8IYE0 955 aa17.35■□□□□ 0.37
PTPN13-203ENST00000427191 DHX16O60231 1041 aaKnown RBP17.35■□□□□ 0.37
PTPN13-203ENST00000427191 TXLNAP40222 546 aa17.35■□□□□ 0.37
PTPN13-203ENST00000427191 KIAA0754O94854 1291 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms