RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 TIMELESSQ9UNS1 1208 aa19.22■□□□□ 0.67
PRPF39-202ENST00000424478 PPLO60437 1756 aa19.21■□□□□ 0.67
PRPF39-202ENST00000424478 SETD1BQ9UPS6 1966 aaKnown RBP19.21■□□□□ 0.67
PRPF39-202ENST00000424478 RIMS2Q9UQ26 1411 aa19.2■□□□□ 0.66
PRPF39-202ENST00000424478 IFT172Q9UG01 1749 aa19.2■□□□□ 0.66
PRPF39-202ENST00000424478 CFAP70Q5T0N1 1121 aa19.2■□□□□ 0.66
PRPF39-202ENST00000424478 BCANQ96GW7 911 aa19.2■□□□□ 0.66
PRPF39-202ENST00000424478 UHRF1BP1Q6BDS2 1440 aa19.19■□□□□ 0.66
PRPF39-202ENST00000424478 PRAG1Q86YV5 1406 aa19.19■□□□□ 0.66
PRPF39-202ENST00000424478 TXNDC2Q86VQ3 553 aa19.18■□□□□ 0.66
PRPF39-202ENST00000424478 TMEM2Q9UHN6 1383 aa19.17■□□□□ 0.66
PRPF39-202ENST00000424478 TMEM132EQ6IEE7 984 aa19.17■□□□□ 0.66
PRPF39-202ENST00000424478 THEMISQ8N1K5 641 aaPredicted RBP19.16■□□□□ 0.66
PRPF39-202ENST00000424478 ZFYVE9O95405 1425 aa19.15■□□□□ 0.66
PRPF39-202ENST00000424478 VGFO15240 615 aaPredicted RBP19.14■□□□□ 0.65
PRPF39-202ENST00000424478 SLC26A8Q96RN1 970 aa19.14■□□□□ 0.65
PRPF39-202ENST00000424478 NCKAP5LQ9HCH0 1330 aa19.13■□□□□ 0.65
PRPF39-202ENST00000424478 RPGRIP1LQ68CZ1 1315 aa19.12■□□□□ 0.65
PRPF39-202ENST00000424478 NEURL4Q96JN8 1562 aa19.12■□□□□ 0.65
PRPF39-202ENST00000424478 ROCK2O75116 1388 aaKnown RBP19.12■□□□□ 0.65
PRPF39-202ENST00000424478 ZNF142P52746 1687 aaPredicted RBP19.12■□□□□ 0.65
PRPF39-202ENST00000424478 CARD11Q9BXL7 1154 aa19.11■□□□□ 0.65
PRPF39-202ENST00000424478 MYOM2P54296 1465 aa19.11■□□□□ 0.65
PRPF39-202ENST00000424478 TRPM1Q7Z4N2 1603 aa19.1■□□□□ 0.65
PRPF39-202ENST00000424478 PIK3C2GO75747 1445 aa19.1■□□□□ 0.65
PRPF39-202ENST00000424478 STK26Q9P289 416 aa19.09■□□□□ 0.65
PRPF39-202ENST00000424478 EID1Q9Y6B2 187 aa19.09■□□□□ 0.65
PRPF39-202ENST00000424478 LMTK3Q96Q04 1460 aa19.09■□□□□ 0.65
PRPF39-202ENST00000424478 IQGAP1P46940 1657 aa19.07■□□□□ 0.64
PRPF39-202ENST00000424478 KDM5AP29375 1690 aaKnown RBP19.07■□□□□ 0.64
PRPF39-202ENST00000424478 NRXN1Q9ULB1 1477 aa19.07■□□□□ 0.64
PRPF39-202ENST00000424478 ARHGAP23Q9P227 1491 aa19.06■□□□□ 0.64
PRPF39-202ENST00000424478 SLIT1O75093 1534 aa19.06■□□□□ 0.64
PRPF39-202ENST00000424478 RALGAPBQ86X10 1494 aa19.06■□□□□ 0.64
PRPF39-202ENST00000424478 ANKLE2Q86XL3 938 aa19.05■□□□□ 0.64
PRPF39-202ENST00000424478 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.05■□□□□ 0.64
PRPF39-202ENST00000424478 SCAF11Q99590 1463 aaKnown RBP19.05■□□□□ 0.64
PRPF39-202ENST00000424478 C14orf93Q9H972 538 aaKnown RBP19.05■□□□□ 0.64
PRPF39-202ENST00000424478 TRAK1Q9UPV9 953 aa19.05■□□□□ 0.64
PRPF39-202ENST00000424478 NRXN3Q9Y4C0 1643 aa19.05■□□□□ 0.64
PRPF39-202ENST00000424478 HSPA5P11021 654 aaKnown RBP19.04■□□□□ 0.64
PRPF39-202ENST00000424478 METP08581 1390 aa19.03■□□□□ 0.64
PRPF39-202ENST00000424478 SAFB2Q14151 953 aaKnown RBP eCLIP19.03■□□□□ 0.64
PRPF39-202ENST00000424478 ALKQ9UM73 1620 aa19.03■□□□□ 0.64
PRPF39-202ENST00000424478 ASXL1Q8IXJ9 1541 aa19.02■□□□□ 0.64
PRPF39-202ENST00000424478 HDGFP51858 240 aaKnown RBP19.02■□□□□ 0.64
PRPF39-202ENST00000424478 USP47Q96K76 1375 aa19.01■□□□□ 0.63
PRPF39-202ENST00000424478 ADAMTS13Q76LX8 1427 aa19■□□□□ 0.63
PRPF39-202ENST00000424478 PLEKHG1Q9ULL1 1385 aa18.99■□□□□ 0.63
PRPF39-202ENST00000424478 ST20-MTHFSA0A0A6YYL1 179 aa18.99■□□□□ 0.63
PRPF39-202ENST00000424478 RBM33Q96EV2 1170 aaKnown RBP18.99■□□□□ 0.63
PRPF39-202ENST00000424478 STAC3Q96MF2 364 aa18.98■□□□□ 0.63
PRPF39-202ENST00000424478 ADGRB1O14514 1584 aa18.98■□□□□ 0.63
PRPF39-202ENST00000424478 EIF4G2P78344 907 aaKnown RBP eCLIP18.98■□□□□ 0.63
PRPF39-202ENST00000424478 SETD1AO15047 1707 aaKnown RBP18.97■□□□□ 0.63
PRPF39-202ENST00000424478 POLR1AO95602 1720 aaPredicted RBP18.97■□□□□ 0.63
PRPF39-202ENST00000424478 AEBP2Q6ZN18 517 aaPredicted RBP18.96■□□□□ 0.63
PRPF39-202ENST00000424478 SETBP1Q9Y6X0 1596 aa18.96■□□□□ 0.63
PRPF39-202ENST00000424478 NPHP4O75161 1426 aaPredicted RBP18.95■□□□□ 0.62
PRPF39-202ENST00000424478 WAPLQ7Z5K2 1190 aa18.95■□□□□ 0.62
PRPF39-202ENST00000424478 POLR3GLQ9BT43 218 aa18.95■□□□□ 0.62
PRPF39-202ENST00000424478 GPRASP1Q5JY77 1395 aa18.95■□□□□ 0.62
PRPF39-202ENST00000424478 C11orf95C9JLR9 678 aaPredicted RBP18.94■□□□□ 0.62
PRPF39-202ENST00000424478 STRCQ7RTU9 1775 aa18.94■□□□□ 0.62
PRPF39-202ENST00000424478 KIAA1210Q9ULL0 1709 aa18.94■□□□□ 0.62
PRPF39-202ENST00000424478 PTPRUQ92729 1446 aa18.93■□□□□ 0.62
PRPF39-202ENST00000424478 YTHDC2Q9H6S0 1430 aaKnown RBP18.93■□□□□ 0.62
PRPF39-202ENST00000424478 PLEKHH1Q9ULM0 1364 aa18.92■□□□□ 0.62
PRPF39-202ENST00000424478 ZNF316A6NFI3 1004 aaPredicted RBP18.91■□□□□ 0.62
PRPF39-202ENST00000424478 PRAM1Q96QH2 718 aa18.91■□□□□ 0.62
PRPF39-202ENST00000424478 AMOTL2Q9Y2J4 779 aa18.91■□□□□ 0.62
PRPF39-202ENST00000424478 LAMC1P11047 1609 aa18.9■□□□□ 0.62
PRPF39-202ENST00000424478 MED14O60244 1454 aa18.9■□□□□ 0.62
PRPF39-202ENST00000424478 KCNA6P17658 529 aa18.89■□□□□ 0.61
PRPF39-202ENST00000424478 TBX22Q9Y458 520 aa18.89■□□□□ 0.61
PRPF39-202ENST00000424478 MINK1Q8N4C8 1332 aaPredicted RBP18.88■□□□□ 0.61
PRPF39-202ENST00000424478 POGKQ9P215 609 aa18.87■□□□□ 0.61
PRPF39-202ENST00000424478 ROBO2Q9HCK4 1378 aa18.87■□□□□ 0.61
PRPF39-202ENST00000424478 ARHGEF28Q8N1W1 1705 aaKnown RBP18.87■□□□□ 0.61
PRPF39-202ENST00000424478 TESK2Q96S53 571 aa18.86■□□□□ 0.61
PRPF39-202ENST00000424478 LRPPRCP42704 1394 aaKnown RBP18.85■□□□□ 0.61
PRPF39-202ENST00000424478 CENPJQ9HC77 1338 aaPredicted RBP18.85■□□□□ 0.61
PRPF39-202ENST00000424478 DISP3Q9P2K9 1392 aa18.84■□□□□ 0.61
PRPF39-202ENST00000424478 ZNF335Q9H4Z2 1342 aaPredicted RBP18.83■□□□□ 0.6
PRPF39-202ENST00000424478 NUTM2FA1L443 756 aa18.83■□□□□ 0.6
PRPF39-202ENST00000424478 WASHC2AQ641Q2 1341 aa18.82■□□□□ 0.6
PRPF39-202ENST00000424478 QRICH2Q9H0J4 1663 aa18.82■□□□□ 0.6
PRPF39-202ENST00000424478 EIF3AQ14152 1382 aaKnown RBP18.8■□□□□ 0.6
PRPF39-202ENST00000424478 ABCC11Q96J66 1382 aa18.8■□□□□ 0.6
PRPF39-202ENST00000424478 STRCP1A6NGW2 1772 aa18.8■□□□□ 0.6
PRPF39-202ENST00000424478 CHD2O14647 1828 aaKnown RBP18.79■□□□□ 0.6
PRPF39-202ENST00000424478 KIF7Q2M1P5 1343 aa18.79■□□□□ 0.6
PRPF39-202ENST00000424478 DIP2AQ14689 1571 aa18.79■□□□□ 0.6
PRPF39-202ENST00000424478 DDX10Q13206 875 aaKnown RBP18.79■□□□□ 0.6
PRPF39-202ENST00000424478 CABP2Q9NPB3 220 aa18.77■□□□□ 0.6
PRPF39-202ENST00000424478 CNGB1Q14028 1251 aaPredicted RBP18.77■□□□□ 0.6
PRPF39-202ENST00000424478 XRN1Q8IZH2 1706 aaKnown RBP18.76■□□□□ 0.59
PRPF39-202ENST00000424478 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.75■□□□□ 0.59
PRPF39-202ENST00000424478 C14orf37Q86TY3 774 aa18.75■□□□□ 0.59
PRPF39-202ENST00000424478 PROSER2Q86WR7 435 aaPredicted RBP18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms