RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 TOM1O60784 492 aa9.5□□□□□ -0.89
USP54-202ENST00000413442 SPHKAPQ2M3C7 1700 aa9.5□□□□□ -0.89
USP54-202ENST00000413442 PIK3R4Q99570 1358 aa9.5□□□□□ -0.89
USP54-202ENST00000413442 SETD5Q9C0A6 1442 aa9.49□□□□□ -0.89
USP54-202ENST00000413442 VGFO15240 615 aaPredicted RBP9.49□□□□□ -0.89
USP54-202ENST00000413442 KCNA6P17658 529 aa9.49□□□□□ -0.89
USP54-202ENST00000413442 ZNF335Q9H4Z2 1342 aaPredicted RBP9.49□□□□□ -0.89
USP54-202ENST00000413442 PLEKHG1Q9ULL1 1385 aa9.49□□□□□ -0.89
USP54-202ENST00000413442 KIF1BO60333 1816 aa9.48□□□□□ -0.89
USP54-202ENST00000413442 PPP1R15AO75807 674 aaPredicted RBP9.48□□□□□ -0.89
USP54-202ENST00000413442 STAC3Q96MF2 364 aa9.48□□□□□ -0.89
USP54-202ENST00000413442 NCOA3Q9Y6Q9 1424 aa9.48□□□□□ -0.89
USP54-202ENST00000413442 CHGAP10645 457 aaKnown RBP9.47□□□□□ -0.89
USP54-202ENST00000413442 MPHOSPH9Q99550 1183 aa9.47□□□□□ -0.89
USP54-202ENST00000413442 ZFYVE9O95405 1425 aa9.47□□□□□ -0.89
USP54-202ENST00000413442 RIMS2Q9UQ26 1411 aa9.47□□□□□ -0.89
USP54-202ENST00000413442 TRPM2O94759 1503 aa9.46□□□□□ -0.89
USP54-202ENST00000413442 BCANQ96GW7 911 aa9.46□□□□□ -0.9
USP54-202ENST00000413442 MYO5BQ9ULV0 1848 aa9.46□□□□□ -0.9
USP54-202ENST00000413442 DIP2AQ14689 1571 aa9.46□□□□□ -0.9
USP54-202ENST00000413442 ZNF326Q5BKZ1 582 aaKnown RBP9.44□□□□□ -0.9
USP54-202ENST00000413442 CHD2O14647 1828 aaKnown RBP9.43□□□□□ -0.9
USP54-202ENST00000413442 UBAP1LF5GYI3 381 aa9.43□□□□□ -0.9
USP54-202ENST00000413442 LRRC7Q96NW7 1537 aa9.42□□□□□ -0.9
USP54-202ENST00000413442 NKTRP30414 1462 aaKnown RBP9.42□□□□□ -0.9
USP54-202ENST00000413442 PROSER2Q86WR7 435 aaPredicted RBP9.42□□□□□ -0.9
USP54-202ENST00000413442 SLC26A8Q96RN1 970 aa9.42□□□□□ -0.9
USP54-202ENST00000413442 CCDC144AA2RUR9 1427 aa9.41□□□□□ -0.9
USP54-202ENST00000413442 ANKRD30BQ9BXX2 1392 aa9.4□□□□□ -0.9
USP54-202ENST00000413442 RAB3GAP2Q9H2M9 1393 aa9.39□□□□□ -0.91
USP54-202ENST00000413442 CLTCL1P53675 1640 aa9.39□□□□□ -0.91
USP54-202ENST00000413442 NWD1Q149M9 1564 aa9.39□□□□□ -0.91
USP54-202ENST00000413442 SETBP1Q9Y6X0 1596 aa9.39□□□□□ -0.91
USP54-202ENST00000413442 C19orf44Q9H6X5 657 aa9.39□□□□□ -0.91
USP54-202ENST00000413442 STRCP1A6NGW2 1772 aa9.39□□□□□ -0.91
USP54-202ENST00000413442 ADAMTS13Q76LX8 1427 aa9.38□□□□□ -0.91
USP54-202ENST00000413442 MSH6P52701 1360 aa9.37□□□□□ -0.91
USP54-202ENST00000413442 CADPS2Q86UW7 1296 aa9.37□□□□□ -0.91
USP54-202ENST00000413442 AMOTL2Q9Y2J4 779 aa9.37□□□□□ -0.91
USP54-202ENST00000413442 FAM135BQ49AJ0 1406 aa9.37□□□□□ -0.91
USP54-202ENST00000413442 NEXMIFQ5QGS0 1516 aa9.36□□□□□ -0.91
USP54-202ENST00000413442 SIRT1Q96EB6 747 aa9.36□□□□□ -0.91
USP54-202ENST00000413442 PPLO60437 1756 aa9.36□□□□□ -0.91
USP54-202ENST00000413442 TMEM94Q12767 1356 aa9.36□□□□□ -0.91
USP54-202ENST00000413442 XIRP1Q702N8 1843 aaKnown RBP9.35□□□□□ -0.91
USP54-202ENST00000413442 SPATA31E1Q6ZUB1 1445 aa9.35□□□□□ -0.91
USP54-202ENST00000413442 SLAIN2Q9P270 581 aa9.35□□□□□ -0.91
USP54-202ENST00000413442 DCCP43146 1447 aa9.34□□□□□ -0.91
USP54-202ENST00000413442 PRAG1Q86YV5 1406 aa9.34□□□□□ -0.91
USP54-202ENST00000413442 ATF3P18847 181 aa9.34□□□□□ -0.91
USP54-202ENST00000413442 NUTM2DQ5VT03 806 aaPredicted RBP9.33□□□□□ -0.92
USP54-202ENST00000413442 PIP4K2BP78356 416 aa9.32□□□□□ -0.92
USP54-202ENST00000413442 RGL3Q3MIN7 710 aa9.32□□□□□ -0.92
USP54-202ENST00000413442 C14orf37Q86TY3 774 aa9.32□□□□□ -0.92
USP54-202ENST00000413442 ALKQ9UM73 1620 aa9.31□□□□□ -0.92
USP54-202ENST00000413442 NRXN3Q9Y4C0 1643 aa9.31□□□□□ -0.92
USP54-202ENST00000413442 IFT172Q9UG01 1749 aa9.31□□□□□ -0.92
USP54-202ENST00000413442 TRIM26Q12899 539 aaPredicted RBP9.31□□□□□ -0.92
USP54-202ENST00000413442 C14orf93Q9H972 538 aaKnown RBP9.31□□□□□ -0.92
USP54-202ENST00000413442 XRN1Q8IZH2 1706 aaKnown RBP9.31□□□□□ -0.92
USP54-202ENST00000413442 LAMC1P11047 1609 aa9.31□□□□□ -0.92
USP54-202ENST00000413442 SCAF1Q9H7N4 1312 aaKnown RBP9.31□□□□□ -0.92
USP54-202ENST00000413442 MYOM2P54296 1465 aa9.3□□□□□ -0.92
USP54-202ENST00000413442 METP08581 1390 aa9.3□□□□□ -0.92
USP54-202ENST00000413442 DHX57Q6P158 1386 aaKnown RBP9.3□□□□□ -0.92
USP54-202ENST00000413442 ABCC11Q96J66 1382 aa9.3□□□□□ -0.92
USP54-202ENST00000413442 POTEDQ86YR6 584 aa9.3□□□□□ -0.92
USP54-202ENST00000413442 PTCH1Q13635 1447 aa9.3□□□□□ -0.92
USP54-202ENST00000413442 PTPRUQ92729 1446 aa9.29□□□□□ -0.92
USP54-202ENST00000413442 NRXN1Q9ULB1 1477 aa9.28□□□□□ -0.92
USP54-202ENST00000413442 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.28□□□□□ -0.92
USP54-202ENST00000413442 HSPA1LP34931 641 aa9.28□□□□□ -0.92
USP54-202ENST00000413442 TECPR2O15040 1411 aa9.28□□□□□ -0.92
USP54-202ENST00000413442 PIK3C2GO75747 1445 aa9.28□□□□□ -0.92
USP54-202ENST00000413442 ADGRF5Q8IZF2 1346 aa9.28□□□□□ -0.92
USP54-202ENST00000413442 SETD1AO15047 1707 aaKnown RBP9.28□□□□□ -0.92
USP54-202ENST00000413442 LRPPRCP42704 1394 aaKnown RBP9.27□□□□□ -0.93
USP54-202ENST00000413442 MSH5O43196 834 aa9.27□□□□□ -0.93
USP54-202ENST00000413442 ADGRL3Q9HAR2 1447 aa9.26□□□□□ -0.93
USP54-202ENST00000413442 DCAF11Q8TEB1 546 aa9.26□□□□□ -0.93
USP54-202ENST00000413442 KNDC1Q76NI1 1749 aa9.25□□□□□ -0.93
USP54-202ENST00000413442 ROBO1Q9Y6N7 1651 aa9.24□□□□□ -0.93
USP54-202ENST00000413442 LRRC59Q96AG4 307 aaKnown RBP9.24□□□□□ -0.93
USP54-202ENST00000413442 YTHDC2Q9H6S0 1430 aaKnown RBP9.23□□□□□ -0.93
USP54-202ENST00000413442 KIAA1210Q9ULL0 1709 aa9.23□□□□□ -0.93
USP54-202ENST00000413442 RBM33Q96EV2 1170 aaKnown RBP9.23□□□□□ -0.93
USP54-202ENST00000413442 SPATA31A6Q5VVP1 1343 aa9.23□□□□□ -0.93
USP54-202ENST00000413442 DLC1Q96QB1 1528 aa9.22□□□□□ -0.93
USP54-202ENST00000413442 CFAP70Q5T0N1 1121 aa9.22□□□□□ -0.93
USP54-202ENST00000413442 ROBO2Q9HCK4 1378 aa9.22□□□□□ -0.93
USP54-202ENST00000413442 JCADQ9P266 1359 aa9.22□□□□□ -0.93
USP54-202ENST00000413442 AHDC1Q5TGY3 1603 aaPredicted RBP9.21□□□□□ -0.93
USP54-202ENST00000413442 SLC24A1O60721 1099 aa9.21□□□□□ -0.94
USP54-202ENST00000413442 BRINP3Q76B58 766 aa9.21□□□□□ -0.94
USP54-202ENST00000413442 KDM2AQ9Y2K7 1162 aa9.21□□□□□ -0.94
USP54-202ENST00000413442 PHLPP1O60346 1717 aa9.21□□□□□ -0.94
USP54-202ENST00000413442 EIF3AQ14152 1382 aaKnown RBP9.21□□□□□ -0.94
USP54-202ENST00000413442 DISP3Q9P2K9 1392 aa9.21□□□□□ -0.94
USP54-202ENST00000413442 MST1RQ04912 1400 aa9.21□□□□□ -0.94
USP54-202ENST00000413442 TMEM132EQ6IEE7 984 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms