RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 TESK2Q96S53 571 aa7.63□□□□□ -1.19
CCDC88A-203ENST00000412148 RTEL1-TNFRSF6BF6WH68 1400 aa7.63□□□□□ -1.19
CCDC88A-203ENST00000412148 KLHL34Q8N239 644 aa7.62□□□□□ -1.19
CCDC88A-203ENST00000412148 BACH2Q9BYV9 841 aa7.62□□□□□ -1.19
CCDC88A-203ENST00000412148 USP32Q8NFA0 1604 aa7.62□□□□□ -1.19
CCDC88A-203ENST00000412148 ARHGAP5Q13017 1502 aa7.62□□□□□ -1.19
CCDC88A-203ENST00000412148 CHMP7Q8WUX9 453 aaPredicted RBP7.62□□□□□ -1.19
CCDC88A-203ENST00000412148 ZBTB47Q9UFB7 747 aaPredicted RBP7.62□□□□□ -1.19
CCDC88A-203ENST00000412148 PTPRTO14522 1441 aa7.62□□□□□ -1.19
CCDC88A-203ENST00000412148 CNKSR2Q8WXI2 1034 aa7.61□□□□□ -1.19
CCDC88A-203ENST00000412148 ZC3H13Q5T200 1668 aaKnown RBP7.61□□□□□ -1.19
CCDC88A-203ENST00000412148 ASXL1Q8IXJ9 1541 aa7.61□□□□□ -1.19
CCDC88A-203ENST00000412148 EIF3AQ14152 1382 aaKnown RBP7.61□□□□□ -1.19
CCDC88A-203ENST00000412148 PAK3O75914 559 aaPredicted RBP7.61□□□□□ -1.19
CCDC88A-203ENST00000412148 INO80Q9ULG1 1556 aaPredicted RBP7.61□□□□□ -1.19
CCDC88A-203ENST00000412148 NGEFQ8N5V2 710 aa7.61□□□□□ -1.19
CCDC88A-203ENST00000412148 KIF1BO60333 1816 aa7.6□□□□□ -1.19
CCDC88A-203ENST00000412148 ZCCHC11Q5TAX3 1644 aaKnown RBP7.6□□□□□ -1.19
CCDC88A-203ENST00000412148 MYOM2P54296 1465 aa7.6□□□□□ -1.19
CCDC88A-203ENST00000412148 DCAF11Q8TEB1 546 aa7.6□□□□□ -1.19
CCDC88A-203ENST00000412148 ZNF521Q96K83 1311 aa7.6□□□□□ -1.19
CCDC88A-203ENST00000412148 CLTCL1P53675 1640 aa7.6□□□□□ -1.19
CCDC88A-203ENST00000412148 DISP3Q9P2K9 1392 aa7.6□□□□□ -1.19
CCDC88A-203ENST00000412148 SETBP1Q9Y6X0 1596 aa7.59□□□□□ -1.19
CCDC88A-203ENST00000412148 MAP3K4Q9Y6R4 1608 aa7.59□□□□□ -1.19
CCDC88A-203ENST00000412148 DDRGK1Q96HY6 314 aa7.59□□□□□ -1.19
CCDC88A-203ENST00000412148 KDM2BQ8NHM5 1336 aa7.59□□□□□ -1.19
CCDC88A-203ENST00000412148 ZMYM3Q14202 1370 aa7.59□□□□□ -1.19
CCDC88A-203ENST00000412148 PLCH2O75038 1416 aa7.59□□□□□ -1.19
CCDC88A-203ENST00000412148 SCAF11Q99590 1463 aaKnown RBP7.59□□□□□ -1.19
CCDC88A-203ENST00000412148 ZFYVE16Q7Z3T8 1539 aa7.59□□□□□ -1.19
CCDC88A-203ENST00000412148 ABCA9Q8IUA7 1624 aa7.59□□□□□ -1.19
CCDC88A-203ENST00000412148 PPM1GO15355 546 aaPredicted RBP7.59□□□□□ -1.19
CCDC88A-203ENST00000412148 PDE4AP27815 886 aa7.59□□□□□ -1.19
CCDC88A-203ENST00000412148 PODXL2Q9NZ53 605 aa7.59□□□□□ -1.19
CCDC88A-203ENST00000412148 TMF1P82094 1093 aa7.58□□□□□ -1.2
CCDC88A-203ENST00000412148 NINLQ9Y2I6 1382 aa7.58□□□□□ -1.2
CCDC88A-203ENST00000412148 ARID3CA6NKF2 412 aa7.57□□□□□ -1.2
CCDC88A-203ENST00000412148 EXOC6Q8TAG9 804 aa7.57□□□□□ -1.2
CCDC88A-203ENST00000412148 ZNF777Q9ULD5 760 aaPredicted RBP7.57□□□□□ -1.2
CCDC88A-203ENST00000412148 SHPRHQ149N8 1683 aa7.57□□□□□ -1.2
CCDC88A-203ENST00000412148 NRXN1Q9ULB1 1477 aa7.57□□□□□ -1.2
CCDC88A-203ENST00000412148 SBNO2Q9Y2G9 1366 aa7.57□□□□□ -1.2
CCDC88A-203ENST00000412148 CDCA8Q53HL2 280 aa7.57□□□□□ -1.2
CCDC88A-203ENST00000412148 RTL5Q5HYW3 569 aaPredicted RBP7.57□□□□□ -1.2
CCDC88A-203ENST00000412148 TRMT2AQ8IZ69 625 aaKnown RBP7.57□□□□□ -1.2
CCDC88A-203ENST00000412148 LMTK2Q8IWU2 1503 aa7.56□□□□□ -1.2
CCDC88A-203ENST00000412148 ABCA6Q8N139 1617 aa7.56□□□□□ -1.2
CCDC88A-203ENST00000412148 MROH1Q8NDA8 1641 aa7.56□□□□□ -1.2
CCDC88A-203ENST00000412148 HNRNPMP52272 730 aaKnown RBP eCLIP7.56□□□□□ -1.2
CCDC88A-203ENST00000412148 ZNF326Q5BKZ1 582 aaKnown RBP7.56□□□□□ -1.2
CCDC88A-203ENST00000412148 CENPQQ7L2Z9 268 aaPredicted RBP7.56□□□□□ -1.2
CCDC88A-203ENST00000412148 FOXD4L1Q9NU39 408 aa7.55□□□□□ -1.2
CCDC88A-203ENST00000412148 PPRC1Q5VV67 1664 aaKnown RBP7.54□□□□□ -1.2
CCDC88A-203ENST00000412148 PPLO60437 1756 aa7.54□□□□□ -1.2
CCDC88A-203ENST00000412148 AAMPQ13685 434 aa7.54□□□□□ -1.2
CCDC88A-203ENST00000412148 NKTRP30414 1462 aaKnown RBP7.54□□□□□ -1.2
CCDC88A-203ENST00000412148 NBPF1Q3BBV0 1214 aa7.53□□□□□ -1.2
CCDC88A-203ENST00000412148 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.53□□□□□ -1.2
CCDC88A-203ENST00000412148 PANK3Q9H999 370 aa7.53□□□□□ -1.2
CCDC88A-203ENST00000412148 EFCAB6Q5THR3 1501 aa7.53□□□□□ -1.2
CCDC88A-203ENST00000412148 DUSP27Q5VZP5 1158 aa7.53□□□□□ -1.2
CCDC88A-203ENST00000412148 ATP7AQ04656 1500 aa7.52□□□□□ -1.21
CCDC88A-203ENST00000412148 FANCAO15360 1455 aa7.52□□□□□ -1.21
CCDC88A-203ENST00000412148 MROH2AA6NES4 1674 aa7.52□□□□□ -1.21
CCDC88A-203ENST00000412148 PLEKHH1Q9ULM0 1364 aa7.52□□□□□ -1.21
CCDC88A-203ENST00000412148 HOMEZQ8IX15 550 aa7.52□□□□□ -1.21
CCDC88A-203ENST00000412148 ANKRD26Q9UPS8 1709 aa7.51□□□□□ -1.21
CCDC88A-203ENST00000412148 PPP2R1AP30153 589 aa7.51□□□□□ -1.21
CCDC88A-203ENST00000412148 POLR3GLQ9BT43 218 aa7.51□□□□□ -1.21
CCDC88A-203ENST00000412148 ERVK-7P63135 1459 aa7.51□□□□□ -1.21
CCDC88A-203ENST00000412148 ADGRB3O60242 1522 aa7.51□□□□□ -1.21
CCDC88A-203ENST00000412148 CDCA7LQ96GN5 454 aa7.51□□□□□ -1.21
CCDC88A-203ENST00000412148 QRICH2Q9H0J4 1663 aa7.51□□□□□ -1.21
CCDC88A-203ENST00000412148 ADGRL1O94910 1474 aa7.51□□□□□ -1.21
CCDC88A-203ENST00000412148 POLR3AO14802 1390 aaPredicted RBP7.5□□□□□ -1.21
CCDC88A-203ENST00000412148 SLFN5Q08AF3 891 aa7.5□□□□□ -1.21
CCDC88A-203ENST00000412148 CRBNQ96SW2 442 aa7.5□□□□□ -1.21
CCDC88A-203ENST00000412148 CFAP74Q9C0B2 1584 aa7.5□□□□□ -1.21
CCDC88A-203ENST00000412148 IQSEC2Q5JU85 1478 aa7.5□□□□□ -1.21
CCDC88A-203ENST00000412148 ADGRB2O60241 1585 aa7.5□□□□□ -1.21
CCDC88A-203ENST00000412148 FAM161AQ3B820 660 aa7.5□□□□□ -1.21
CCDC88A-203ENST00000412148 KANK1Q14678 1352 aa7.5□□□□□ -1.21
CCDC88A-203ENST00000412148 GOLGA2Q08379 1002 aa7.49□□□□□ -1.21
CCDC88A-203ENST00000412148 NBR1Q14596 966 aa7.49□□□□□ -1.21
CCDC88A-203ENST00000412148 ADAMTS8Q9UP79 889 aa7.49□□□□□ -1.21
CCDC88A-203ENST00000412148 KIDINS220Q9ULH0 1771 aa7.49□□□□□ -1.21
CCDC88A-203ENST00000412148 PIK3C2BO00750 1634 aa7.48□□□□□ -1.21
CCDC88A-203ENST00000412148 TRAPPC8Q9Y2L5 1435 aa7.48□□□□□ -1.21
CCDC88A-203ENST00000412148 ERCC6L2Q5T890 1561 aa7.48□□□□□ -1.21
CCDC88A-203ENST00000412148 PDE3AQ14432 1141 aa7.48□□□□□ -1.21
CCDC88A-203ENST00000412148 C8orf34Q49A92 452 aa7.48□□□□□ -1.21
CCDC88A-203ENST00000412148 EFCAB2Q5VUJ9 269 aa7.48□□□□□ -1.21
CCDC88A-203ENST00000412148 KNSTRNQ9Y448 316 aa7.48□□□□□ -1.21
CCDC88A-203ENST00000412148 PUS7Q96PZ0 661 aaKnown RBP7.48□□□□□ -1.21
CCDC88A-203ENST00000412148 CGNL1Q0VF96 1302 aa7.47□□□□□ -1.21
CCDC88A-203ENST00000412148 E9PSI1 815 aa7.47□□□□□ -1.21
CCDC88A-203ENST00000412148 NEFMP07197 916 aa7.47□□□□□ -1.21
CCDC88A-203ENST00000412148 WDR43Q15061 677 aaKnown RBP eCLIP7.47□□□□□ -1.215e-6■□□□□ 10.7
CCDC88A-203ENST00000412148 ARHGEF28Q8N1W1 1705 aaKnown RBP7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms