RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 SAMD9LQ8IVG5 1584 aa13.66□□□□□ -0.22
CCDC40-204ENST00000397545 LMOD2Q6P5Q4 547 aa13.66□□□□□ -0.22
CCDC40-204ENST00000397545 L1TD1Q5T7N2 865 aaKnown RBP13.66□□□□□ -0.22
CCDC40-204ENST00000397545 KIF3BO15066 747 aa13.66□□□□□ -0.22
CCDC40-204ENST00000397545 NUTM2DQ5VT03 806 aaPredicted RBP13.65□□□□□ -0.22
CCDC40-204ENST00000397545 CRBNQ96SW2 442 aa13.65□□□□□ -0.22
CCDC40-204ENST00000397545 FOXD4L1Q9NU39 408 aa13.65□□□□□ -0.22
CCDC40-204ENST00000397545 FAM135AQ9P2D6 1515 aa13.64□□□□□ -0.23
CCDC40-204ENST00000397545 RWDD1Q9H446 243 aaPredicted RBP13.64□□□□□ -0.23
CCDC40-204ENST00000397545 FANCIQ9NVI1 1328 aa13.64□□□□□ -0.23
CCDC40-204ENST00000397545 CROCC2H7BZ55 1655 aa13.64□□□□□ -0.23
CCDC40-204ENST00000397545 RRP1P56182 461 aaKnown RBP13.64□□□□□ -0.23
CCDC40-204ENST00000397545 TTC37Q6PGP7 1564 aa13.64□□□□□ -0.23
CCDC40-204ENST00000397545 ARID3AQ99856 593 aa13.64□□□□□ -0.23
CCDC40-204ENST00000397545 PDE3BQ13370 1112 aa13.64□□□□□ -0.23
CCDC40-204ENST00000397545 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.63□□□□□ -0.23
CCDC40-204ENST00000397545 OS9Q13438 667 aaPredicted RBP13.63□□□□□ -0.23
CCDC40-204ENST00000397545 MYBBP1AQ9BQG0 1328 aaKnown RBP13.62□□□□□ -0.23
CCDC40-204ENST00000397545 ABCC2Q92887 1545 aa13.62□□□□□ -0.23
CCDC40-204ENST00000397545 KCNJ4P48050 445 aa13.62□□□□□ -0.23
CCDC40-204ENST00000397545 SMC4Q9NTJ3 1288 aa13.62□□□□□ -0.23
CCDC40-204ENST00000397545 PNNQ9H307 717 aaKnown RBP13.61□□□□□ -0.23
CCDC40-204ENST00000397545 TRAPPC8Q9Y2L5 1435 aa13.61□□□□□ -0.23
CCDC40-204ENST00000397545 DHX29Q7Z478 1369 aaKnown RBP13.61□□□□□ -0.23
CCDC40-204ENST00000397545 CHMP4BQ9H444 224 aaKnown RBP13.61□□□□□ -0.23
CCDC40-204ENST00000397545 RALGAPBQ86X10 1494 aa13.6□□□□□ -0.23
CCDC40-204ENST00000397545 CENPJQ9HC77 1338 aaPredicted RBP13.6□□□□□ -0.23
CCDC40-204ENST00000397545 ZRSR1Q15695 479 aaKnown RBP13.6□□□□□ -0.23
CCDC40-204ENST00000397545 CDC42BPBQ9Y5S2 1711 aa13.59□□□□□ -0.23
CCDC40-204ENST00000397545 MSNP26038 577 aaKnown RBP13.59□□□□□ -0.23
CCDC40-204ENST00000397545 IPO8O15397 1037 aaKnown RBP13.59□□□□□ -0.23
CCDC40-204ENST00000397545 ARHGEF5Q12774 1597 aa13.59□□□□□ -0.23
CCDC40-204ENST00000397545 COG6Q9Y2V7 657 aa13.59□□□□□ -0.23
CCDC40-204ENST00000397545 PLCH2O75038 1416 aa13.59□□□□□ -0.23
CCDC40-204ENST00000397545 APAF1O14727 1248 aa13.59□□□□□ -0.23
CCDC40-204ENST00000397545 FGD1P98174 961 aa13.59□□□□□ -0.23
CCDC40-204ENST00000397545 NAP1L2Q9ULW6 460 aaPredicted RBP13.58□□□□□ -0.24
CCDC40-204ENST00000397545 PREX2Q70Z35 1606 aa13.58□□□□□ -0.24
CCDC40-204ENST00000397545 ARHGEF12Q9NZN5 1544 aa13.58□□□□□ -0.24
CCDC40-204ENST00000397545 KANK1Q14678 1352 aa13.58□□□□□ -0.24
CCDC40-204ENST00000397545 TRAK1Q9UPV9 953 aa13.57□□□□□ -0.24
CCDC40-204ENST00000397545 BCORL1Q5H9F3 1711 aa13.57□□□□□ -0.24
CCDC40-204ENST00000397545 ELL2O00472 640 aaPredicted RBP13.57□□□□□ -0.24
CCDC40-204ENST00000397545 PNISRQ8TF01 805 aaKnown RBP13.57□□□□□ -0.24
CCDC40-204ENST00000397545 UHRF1BP1Q6BDS2 1440 aa13.57□□□□□ -0.24
CCDC40-204ENST00000397545 SCAPERQ9BY12 1400 aa13.56□□□□□ -0.24
CCDC40-204ENST00000397545 PMFBP1Q8TBY8 1022 aa13.56□□□□□ -0.24
CCDC40-204ENST00000397545 GOLGA6L3A6NEY3 463 aa13.56□□□□□ -0.24
CCDC40-204ENST00000397545 FAM161AQ3B820 660 aa13.56□□□□□ -0.24
CCDC40-204ENST00000397545 GBP4Q96PP9 640 aa13.56□□□□□ -0.24
CCDC40-204ENST00000397545 PRAG1Q86YV5 1406 aa13.55□□□□□ -0.24
CCDC40-204ENST00000397545 GSE1Q14687 1217 aa13.55□□□□□ -0.24
CCDC40-204ENST00000397545 KDM5CP41229 1560 aa13.54□□□□□ -0.24
CCDC40-204ENST00000397545 GOLGA6L4A6NEF3 574 aa13.54□□□□□ -0.24
CCDC40-204ENST00000397545 PLA2R1Q13018 1463 aa13.54□□□□□ -0.24
CCDC40-204ENST00000397545 CENPQQ7L2Z9 268 aaPredicted RBP13.54□□□□□ -0.24
CCDC40-204ENST00000397545 NOL8Q76FK4 1167 aaKnown RBP13.53□□□□□ -0.24
CCDC40-204ENST00000397545 CDCA7LQ96GN5 454 aa13.53□□□□□ -0.24
CCDC40-204ENST00000397545 A2MP01023 1474 aa13.53□□□□□ -0.24
CCDC40-204ENST00000397545 DISP3Q9P2K9 1392 aa13.53□□□□□ -0.24
CCDC40-204ENST00000397545 PAK3O75914 559 aaPredicted RBP13.53□□□□□ -0.24
CCDC40-204ENST00000397545 FOXD4L5Q5VV16 416 aaPredicted RBP13.52□□□□□ -0.25
CCDC40-204ENST00000397545 FOXD4L4Q8WXT5 416 aaPredicted RBP13.52□□□□□ -0.25
CCDC40-204ENST00000397545 USP35Q9P2H5 1018 aa13.52□□□□□ -0.25
CCDC40-204ENST00000397545 HDGFL2Q7Z4V5 671 aaPredicted RBP13.52□□□□□ -0.25
CCDC40-204ENST00000397545 KDM5DQ9BY66 1539 aa13.51□□□□□ -0.25
CCDC40-204ENST00000397545 MYO5CQ9NQX4 1742 aa13.51□□□□□ -0.25
CCDC40-204ENST00000397545 DUOX2Q9NRD8 1548 aa13.51□□□□□ -0.25
CCDC40-204ENST00000397545 RTF1Q92541 710 aaKnown RBP13.5□□□□□ -0.25
CCDC40-204ENST00000397545 ZCCHC11Q5TAX3 1644 aaKnown RBP13.5□□□□□ -0.25
CCDC40-204ENST00000397545 WASHC2CQ9Y4E1 1318 aa13.5□□□□□ -0.25
CCDC40-204ENST00000397545 SLC4A10Q6U841 1118 aa13.49□□□□□ -0.25
CCDC40-204ENST00000397545 TESK2Q96S53 571 aa13.49□□□□□ -0.25
CCDC40-204ENST00000397545 NUTM2FA1L443 756 aa13.49□□□□□ -0.25
CCDC40-204ENST00000397545 MCCP23508 829 aa13.49□□□□□ -0.25
CCDC40-204ENST00000397545 CFAP70Q5T0N1 1121 aa13.49□□□□□ -0.25
CCDC40-204ENST00000397545 FANCAO15360 1455 aa13.49□□□□□ -0.25
CCDC40-204ENST00000397545 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.49□□□□□ -0.25
CCDC40-204ENST00000397545 ERBINQ96RT1 1412 aa13.48□□□□□ -0.25
CCDC40-204ENST00000397545 SHROOM2Q13796 1616 aa13.48□□□□□ -0.25
CCDC40-204ENST00000397545 HAP1P54257 671 aaPredicted RBP13.48□□□□□ -0.25
CCDC40-204ENST00000397545 BRD4O60885 1362 aaPredicted RBP13.47□□□□□ -0.25
CCDC40-204ENST00000397545 FOXD4L6Q3SYB3 417 aaPredicted RBP13.47□□□□□ -0.25
CCDC40-204ENST00000397545 FOXD4L3Q6VB84 417 aaPredicted RBP13.47□□□□□ -0.25
CCDC40-204ENST00000397545 DRC7Q8IY82 874 aa13.47□□□□□ -0.25
CCDC40-204ENST00000397545 ADGRL1O94910 1474 aa13.47□□□□□ -0.25
CCDC40-204ENST00000397545 CALD1Q05682 793 aaKnown RBP13.46□□□□□ -0.25
CCDC40-204ENST00000397545 WDR7Q9Y4E6 1490 aa13.45□□□□□ -0.26
CCDC40-204ENST00000397545 TRIM6-TRIM34B2RNG4 842 aa13.45□□□□□ -0.26
CCDC40-204ENST00000397545 E9PSI1 815 aa13.45□□□□□ -0.26
CCDC40-204ENST00000397545 ANKRD45Q5TZF3 282 aa13.45□□□□□ -0.26
CCDC40-204ENST00000397545 KIAA1211Q6ZU35 1233 aa13.44□□□□□ -0.26
CCDC40-204ENST00000397545 ASXL2Q76L83 1435 aa13.44□□□□□ -0.26
CCDC40-204ENST00000397545 PER1O15534 1290 aaPredicted RBP13.44□□□□□ -0.26
CCDC40-204ENST00000397545 RAPGEF3O95398 923 aa13.44□□□□□ -0.26
CCDC40-204ENST00000397545 NFKBIBQ15653 356 aa13.44□□□□□ -0.26
CCDC40-204ENST00000397545 ADAMTS8Q9UP79 889 aa13.44□□□□□ -0.26
CCDC40-204ENST00000397545 ABCC1P33527 1531 aa13.44□□□□□ -0.26
CCDC40-204ENST00000397545 SMG6Q86US8 1419 aaKnown RBP13.43□□□□□ -0.26
CCDC40-204ENST00000397545 CHAF1AQ13111 956 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms