RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 AHDC1Q5TGY3 1603 aaPredicted RBP15.16■□□□□ 0.02
NEDD9-203ENST00000397378 EFCAB6Q5THR3 1501 aa15.16■□□□□ 0.02
NEDD9-203ENST00000397378 SETBP1Q9Y6X0 1596 aa15.15■□□□□ 0.02
NEDD9-203ENST00000397378 C14orf37Q86TY3 774 aa15.13■□□□□ 0.01
NEDD9-203ENST00000397378 RBM6P78332 1123 aaKnown RBP15.12■□□□□ 0.01
NEDD9-203ENST00000397378 ATAD2Q6PL18 1390 aa15.11■□□□□ 0.01
NEDD9-203ENST00000397378 ARHGAP31Q2M1Z3 1444 aa15.11■□□□□ 0.01
NEDD9-203ENST00000397378 QTRT2Q9H974 415 aaKnown RBP15.11■□□□□ 0.01
NEDD9-203ENST00000397378 DIP2AQ14689 1571 aa15.11■□□□□ 0.01
NEDD9-203ENST00000397378 MAST1Q9Y2H9 1570 aa15.11■□□□□ 0.01
NEDD9-203ENST00000397378 C8orf37Q96NL8 207 aa15.1■□□□□ 0.01
NEDD9-203ENST00000397378 CHD2O14647 1828 aaKnown RBP15.1■□□□□ 0.01
NEDD9-203ENST00000397378 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.08■□□□□ 0
NEDD9-203ENST00000397378 ATF3P18847 181 aa15.07■□□□□ 0
NEDD9-203ENST00000397378 CADPS2Q86UW7 1296 aa15.07■□□□□ 0
NEDD9-203ENST00000397378 IDI1Q13907 227 aa15.06■□□□□ 0
NEDD9-203ENST00000397378 NGLY1Q96IV0 654 aa15.06■□□□□ 0
NEDD9-203ENST00000397378 ADGRB3O60242 1522 aa15.05■□□□□ -0
NEDD9-203ENST00000397378 DUOX2Q9NRD8 1548 aa15.05■□□□□ -0
NEDD9-203ENST00000397378 NCOA3Q9Y6Q9 1424 aa15.04■□□□□ -0
NEDD9-203ENST00000397378 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.04■□□□□ -0
NEDD9-203ENST00000397378 BRINP3Q76B58 766 aa15.03■□□□□ -0
NEDD9-203ENST00000397378 C19orf44Q9H6X5 657 aa15.02■□□□□ -0
NEDD9-203ENST00000397378 PPP1R15AO75807 674 aaPredicted RBP15.01□□□□□ -0.01
NEDD9-203ENST00000397378 SETD5Q9C0A6 1442 aa15□□□□□ -0.01
NEDD9-203ENST00000397378 ASXL1Q8IXJ9 1541 aa15□□□□□ -0.01
NEDD9-203ENST00000397378 KANK1Q14678 1352 aa14.99□□□□□ -0.01
NEDD9-203ENST00000397378 NHSL1Q5SYE7 1610 aa14.99□□□□□ -0.01
NEDD9-203ENST00000397378 PLEKHG1Q9ULL1 1385 aa14.99□□□□□ -0.01
NEDD9-203ENST00000397378 EP400Q96L91 3159 aa14.98□□□□□ -0.01
NEDD9-203ENST00000397378 ADAMTS2O95450 1211 aa14.98□□□□□ -0.01
NEDD9-203ENST00000397378 LRRC59Q96AG4 307 aaKnown RBP14.98□□□□□ -0.01
NEDD9-203ENST00000397378 MYO5BQ9ULV0 1848 aa14.97□□□□□ -0.01
NEDD9-203ENST00000397378 CCDC125Q86Z20 511 aa14.97□□□□□ -0.01
NEDD9-203ENST00000397378 ERBINQ96RT1 1412 aa14.97□□□□□ -0.01
NEDD9-203ENST00000397378 PNPLA6Q8IY17 1366 aa14.96□□□□□ -0.02
NEDD9-203ENST00000397378 KIF15Q9NS87 1388 aa14.96□□□□□ -0.02
NEDD9-203ENST00000397378 LRP5O75197 1615 aa14.95□□□□□ -0.02
NEDD9-203ENST00000397378 ZFYVE9O95405 1425 aa14.95□□□□□ -0.02
NEDD9-203ENST00000397378 MYOM3Q5VTT5 1437 aa14.95□□□□□ -0.02
NEDD9-203ENST00000397378 USP21Q9UK80 565 aa14.95□□□□□ -0.02
NEDD9-203ENST00000397378 TBX22Q9Y458 520 aa14.95□□□□□ -0.02
NEDD9-203ENST00000397378 CROCC2H7BZ55 1655 aa14.95□□□□□ -0.02
NEDD9-203ENST00000397378 GCC2Q8IWJ2 1684 aa14.94□□□□□ -0.02
NEDD9-203ENST00000397378 NOS1P29475 1434 aa14.94□□□□□ -0.02
NEDD9-203ENST00000397378 RIMS2Q9UQ26 1411 aa14.94□□□□□ -0.02
NEDD9-203ENST00000397378 HDGFP51858 240 aaKnown RBP14.94□□□□□ -0.02
NEDD9-203ENST00000397378 TRPC5Q9UL62 973 aaPredicted RBP14.94□□□□□ -0.02
NEDD9-203ENST00000397378 VPS8Q8N3P4 1428 aa14.93□□□□□ -0.02
NEDD9-203ENST00000397378 RRP7BPQ9NSQ0 103 aa14.93□□□□□ -0.02
NEDD9-203ENST00000397378 SLC52A1Q9NWF4 448 aa14.93□□□□□ -0.02
NEDD9-203ENST00000397378 LMTK2Q8IWU2 1503 aa14.92□□□□□ -0.02
NEDD9-203ENST00000397378 DDX17Q92841 729 aaKnown RBP14.92□□□□□ -0.02
NEDD9-203ENST00000397378 DCCP43146 1447 aa14.92□□□□□ -0.02
NEDD9-203ENST00000397378 MST1RQ04912 1400 aa14.91□□□□□ -0.02
NEDD9-203ENST00000397378 PIK3R4Q99570 1358 aa14.89□□□□□ -0.03
NEDD9-203ENST00000397378 ADAMTS13Q76LX8 1427 aa14.89□□□□□ -0.03
NEDD9-203ENST00000397378 TRPM2O94759 1503 aa14.88□□□□□ -0.03
NEDD9-203ENST00000397378 KANK4Q5T7N3 995 aaPredicted RBP14.88□□□□□ -0.03
NEDD9-203ENST00000397378 AMOTL2Q9Y2J4 779 aa14.88□□□□□ -0.03
NEDD9-203ENST00000397378 ABCC5O15440 1437 aa14.88□□□□□ -0.03
NEDD9-203ENST00000397378 ATRNO75882 1429 aa14.88□□□□□ -0.03
NEDD9-203ENST00000397378 BLMP54132 1417 aaPredicted RBP14.87□□□□□ -0.03
NEDD9-203ENST00000397378 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.87□□□□□ -0.03
NEDD9-203ENST00000397378 TMEM131LA2VDJ0 1609 aa14.87□□□□□ -0.03
NEDD9-203ENST00000397378 PTPN23Q9H3S7 1636 aa14.87□□□□□ -0.03
NEDD9-203ENST00000397378 CHGAP10645 457 aaKnown RBP14.86□□□□□ -0.03
NEDD9-203ENST00000397378 DEFB132Q7Z7B7 95 aa14.86□□□□□ -0.03
NEDD9-203ENST00000397378 FNBP4Q8N3X1 1017 aaPredicted RBP14.85□□□□□ -0.03
NEDD9-203ENST00000397378 PTCH1Q13635 1447 aa14.84□□□□□ -0.03
NEDD9-203ENST00000397378 PTPRUQ92729 1446 aa14.84□□□□□ -0.03
NEDD9-203ENST00000397378 SF3B2Q13435 895 aaKnown RBP14.84□□□□□ -0.03
NEDD9-203ENST00000397378 DAPK1P53355 1430 aa14.83□□□□□ -0.03
NEDD9-203ENST00000397378 RPRD2Q5VT52 1461 aaKnown RBP14.82□□□□□ -0.04
NEDD9-203ENST00000397378 XRN1Q8IZH2 1706 aaKnown RBP14.81□□□□□ -0.04
NEDD9-203ENST00000397378 PSDA5PKW4 1024 aaPredicted RBP14.81□□□□□ -0.04
NEDD9-203ENST00000397378 UNC13BO14795 1591 aa14.79□□□□□ -0.04
NEDD9-203ENST00000397378 NALCNQ8IZF0 1738 aa14.79□□□□□ -0.04
NEDD9-203ENST00000397378 GJD4Q96KN9 370 aaPredicted RBP14.79□□□□□ -0.04
NEDD9-203ENST00000397378 ANKRD30AQ9BXX3 1397 aa14.79□□□□□ -0.04
NEDD9-203ENST00000397378 ADGRL3Q9HAR2 1447 aa14.78□□□□□ -0.04
NEDD9-203ENST00000397378 HRCP23327 699 aa14.78□□□□□ -0.04
NEDD9-203ENST00000397378 YY1P25490 414 aa14.78□□□□□ -0.04
NEDD9-203ENST00000397378 MARF1Q9Y4F3 1742 aaKnown RBP14.78□□□□□ -0.04
NEDD9-203ENST00000397378 COL22A1Q8NFW1 1626 aaPredicted RBP14.77□□□□□ -0.04
NEDD9-203ENST00000397378 BCL9LQ86UU0 1499 aa14.77□□□□□ -0.04
NEDD9-203ENST00000397378 BRWD3Q6RI45 1802 aa14.77□□□□□ -0.05
NEDD9-203ENST00000397378 LAMC1P11047 1609 aa14.77□□□□□ -0.05
NEDD9-203ENST00000397378 SOS2Q07890 1332 aaPredicted RBP14.76□□□□□ -0.05
NEDD9-203ENST00000397378 CHIC2Q9UKJ5 165 aa14.76□□□□□ -0.05
NEDD9-203ENST00000397378 SPHKAPQ2M3C7 1700 aa14.75□□□□□ -0.05
NEDD9-203ENST00000397378 ADGRL2O95490 1459 aa14.75□□□□□ -0.05
NEDD9-203ENST00000397378 C1orf167Q5SNV9 1468 aa14.75□□□□□ -0.05
NEDD9-203ENST00000397378 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.74□□□□□ -0.05
NEDD9-203ENST00000397378 GLI3P10071 1580 aa14.73□□□□□ -0.05
NEDD9-203ENST00000397378 NRXN3Q9Y4C0 1643 aa14.73□□□□□ -0.05
NEDD9-203ENST00000397378 MYOM2P54296 1465 aa14.72□□□□□ -0.05
NEDD9-203ENST00000397378 RALGAPBQ86X10 1494 aa14.72□□□□□ -0.05
NEDD9-203ENST00000397378 LOC105371045A0A1W2PR82 267 aa14.72□□□□□ -0.05
NEDD9-203ENST00000397378 ORAI2Q96SN7 254 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms