RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 NUTM2FA1L443 756 aa6.68□□□□□ -1.34
VPS13C-204ENST00000395898 DHX57Q6P158 1386 aaKnown RBP6.68□□□□□ -1.34
VPS13C-204ENST00000395898 RRP1P56182 461 aaKnown RBP6.68□□□□□ -1.34
VPS13C-204ENST00000395898 BECN2A8MW95 431 aa6.68□□□□□ -1.34
VPS13C-204ENST00000395898 VPS53Q5VIR6 699 aa6.68□□□□□ -1.34
VPS13C-204ENST00000395898 PSME1Q06323 249 aa6.68□□□□□ -1.34
VPS13C-204ENST00000395898 PES1O00541 588 aaKnown RBP6.68□□□□□ -1.34
VPS13C-204ENST00000395898 DIAPH1O60610 1272 aaKnown RBP6.68□□□□□ -1.34
VPS13C-204ENST00000395898 DDX49Q9Y6V7 483 aaKnown RBP6.68□□□□□ -1.34
VPS13C-204ENST00000395898 TRDNQ13061 729 aa6.68□□□□□ -1.34
VPS13C-204ENST00000395898 TNNT3P45378 269 aaPredicted RBP6.67□□□□□ -1.34
VPS13C-204ENST00000395898 SUPT6HQ7KZ85 1726 aaKnown RBP6.67□□□□□ -1.34
VPS13C-204ENST00000395898 GPS2Q13227 327 aa6.67□□□□□ -1.34
VPS13C-204ENST00000395898 RRBP1Q9P2E9 1410 aaKnown RBP6.67□□□□□ -1.34
VPS13C-204ENST00000395898 KAT6BQ8WYB5 2073 aa6.67□□□□□ -1.34
VPS13C-204ENST00000395898 ANKRD20A12PQ8NF67 263 aa6.67□□□□□ -1.34
VPS13C-204ENST00000395898 TRIM34Q9BYJ4 488 aa6.67□□□□□ -1.34
VPS13C-204ENST00000395898 FGD5Q6ZNL6 1462 aa6.67□□□□□ -1.34
VPS13C-204ENST00000395898 CCDC47Q96A33 483 aaKnown RBP6.67□□□□□ -1.34
VPS13C-204ENST00000395898 TCEAL9Q9UHQ7 104 aa6.67□□□□□ -1.34
VPS13C-204ENST00000395898 VPS37DQ86XT2 251 aa6.67□□□□□ -1.34
VPS13C-204ENST00000395898 ANO8Q9HCE9 1232 aaPredicted RBP6.67□□□□□ -1.34
VPS13C-204ENST00000395898 HSP90AB4PQ58FF6 505 aa6.66□□□□□ -1.34
VPS13C-204ENST00000395898 ERICH2A1L162 156 aa6.66□□□□□ -1.34
VPS13C-204ENST00000395898 NOL8Q76FK4 1167 aaKnown RBP6.66□□□□□ -1.34
VPS13C-204ENST00000395898 API5Q9BZZ5 524 aaKnown RBP6.66□□□□□ -1.34
VPS13C-204ENST00000395898 RRP7AQ9Y3A4 280 aaKnown RBP6.66□□□□□ -1.34
VPS13C-204ENST00000395898 WWC1Q8IX03 1113 aa6.66□□□□□ -1.34
VPS13C-204ENST00000395898 RUNDC1Q96C34 613 aa6.66□□□□□ -1.34
VPS13C-204ENST00000395898 IPO7O95373 1038 aaKnown RBP6.66□□□□□ -1.34
VPS13C-204ENST00000395898 OSCARQ8IYS5 282 aa6.66□□□□□ -1.34
VPS13C-204ENST00000395898 IFIT2P09913 472 aaKnown RBP6.66□□□□□ -1.34
VPS13C-204ENST00000395898 INTS3Q68E01 1043 aaKnown RBP6.66□□□□□ -1.34
VPS13C-204ENST00000395898 PDE4AP27815 886 aa6.65□□□□□ -1.34
VPS13C-204ENST00000395898 FYCO1Q9BQS8 1478 aa6.65□□□□□ -1.34
VPS13C-204ENST00000395898 PRM3Q9NNZ6 103 aa6.65□□□□□ -1.34
VPS13C-204ENST00000395898 RIPK4P57078 832 aa6.65□□□□□ -1.34
VPS13C-204ENST00000395898 ARHGAP5Q13017 1502 aa6.65□□□□□ -1.34
VPS13C-204ENST00000395898 BCL2L13Q9BXK5 485 aa6.65□□□□□ -1.34
VPS13C-204ENST00000395898 DZIP1LQ8IYY4 767 aaKnown RBP6.65□□□□□ -1.35
VPS13C-204ENST00000395898 ELL2O00472 640 aaPredicted RBP6.65□□□□□ -1.35
VPS13C-204ENST00000395898 ERC2O15083 957 aa6.65□□□□□ -1.35
VPS13C-204ENST00000395898 GSE1Q14687 1217 aa6.65□□□□□ -1.35
VPS13C-204ENST00000395898 GNAI1P63096 354 aa6.65□□□□□ -1.35
VPS13C-204ENST00000395898 FGD6Q6ZV73 1430 aa6.64□□□□□ -1.35
VPS13C-204ENST00000395898 CPLX1O14810 134 aa6.64□□□□□ -1.35
VPS13C-204ENST00000395898 FOXD4L1Q9NU39 408 aa6.64□□□□□ -1.35
VPS13C-204ENST00000395898 ERICH3Q5RHP9 1530 aa6.64□□□□□ -1.35
VPS13C-204ENST00000395898 LRRC9Q6ZRR7 1453 aa6.64□□□□□ -1.35
VPS13C-204ENST00000395898 APPP05067 770 aa6.64□□□□□ -1.35
VPS13C-204ENST00000395898 MCTP1Q6DN14 999 aa6.64□□□□□ -1.35
VPS13C-204ENST00000395898 MINK1Q8N4C8 1332 aaPredicted RBP6.64□□□□□ -1.35
VPS13C-204ENST00000395898 G3BP1Q13283 466 aaKnown RBP eCLIP6.64□□□□□ -1.356e-6■■■□□ 14.8
VPS13C-204ENST00000395898 TSHZ2Q9NRE2 1034 aa6.64□□□□□ -1.35
VPS13C-204ENST00000395898 SETQ01105 290 aaPredicted RBP6.64□□□□□ -1.35
VPS13C-204ENST00000395898 NUCB2P80303 420 aa6.64□□□□□ -1.35
VPS13C-204ENST00000395898 EIF2S2P20042 333 aaKnown RBP6.63□□□□□ -1.35
VPS13C-204ENST00000395898 FKBP5Q13451 457 aaPredicted RBP6.63□□□□□ -1.35
VPS13C-204ENST00000395898 CRBNQ96SW2 442 aa6.63□□□□□ -1.35
VPS13C-204ENST00000395898 CTDP1Q9Y5B0 961 aaPredicted RBP6.63□□□□□ -1.35
VPS13C-204ENST00000395898 APAF1O14727 1248 aa6.63□□□□□ -1.35
VPS13C-204ENST00000395898 COG6Q9Y2V7 657 aa6.63□□□□□ -1.35
VPS13C-204ENST00000395898 RUSC2Q8N2Y8 1516 aa6.63□□□□□ -1.35
VPS13C-204ENST00000395898 NINLQ9Y2I6 1382 aa6.63□□□□□ -1.35
VPS13C-204ENST00000395898 ATF3P18847 181 aa6.63□□□□□ -1.35
VPS13C-204ENST00000395898 CYB5RLQ6IPT4 315 aa6.62□□□□□ -1.35
VPS13C-204ENST00000395898 RAPGEF4Q8WZA2 1011 aa6.62□□□□□ -1.35
VPS13C-204ENST00000395898 SYNJ2O15056 1496 aa6.62□□□□□ -1.35
VPS13C-204ENST00000395898 RSPH6AQ9H0K4 717 aa6.62□□□□□ -1.35
VPS13C-204ENST00000395898 SCAPERQ9BY12 1400 aa6.62□□□□□ -1.35
VPS13C-204ENST00000395898 EFCAB5A4FU69 1503 aa6.62□□□□□ -1.35
VPS13C-204ENST00000395898 XBP1P17861 261 aa6.62□□□□□ -1.35
VPS13C-204ENST00000395898 SAFBQ15424 915 aaKnown RBP eCLIP6.62□□□□□ -1.35
VPS13C-204ENST00000395898 PLIN1O60240 522 aa6.62□□□□□ -1.35
VPS13C-204ENST00000395898 HECW1Q76N89 1606 aa6.62□□□□□ -1.35
VPS13C-204ENST00000395898 SASS6Q6UVJ0 657 aa6.62□□□□□ -1.35
VPS13C-204ENST00000395898 CHMP5Q9NZZ3 219 aa6.62□□□□□ -1.35
VPS13C-204ENST00000395898 SMG6Q86US8 1419 aaKnown RBP6.62□□□□□ -1.35
VPS13C-204ENST00000395898 ANKRD50Q9ULJ7 1429 aa6.62□□□□□ -1.35
VPS13C-204ENST00000395898 ANO2Q9NQ90 1003 aa6.61□□□□□ -1.35
VPS13C-204ENST00000395898 FOXD4L5Q5VV16 416 aaPredicted RBP6.61□□□□□ -1.35
VPS13C-204ENST00000395898 FOXD4L4Q8WXT5 416 aaPredicted RBP6.61□□□□□ -1.35
VPS13C-204ENST00000395898 TSPYL4Q9UJ04 414 aa6.61□□□□□ -1.35
VPS13C-204ENST00000395898 NAT10Q9H0A0 1025 aaKnown RBP6.61□□□□□ -1.35
VPS13C-204ENST00000395898 WASHC2AQ641Q2 1341 aa6.61□□□□□ -1.35
VPS13C-204ENST00000395898 PSMA5P28066 241 aa6.61□□□□□ -1.35
VPS13C-204ENST00000395898 SYTL4Q96C24 671 aaPredicted RBP6.61□□□□□ -1.35
VPS13C-204ENST00000395898 BRMS1Q9HCU9 246 aa6.61□□□□□ -1.35
VPS13C-204ENST00000395898 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.61□□□□□ -1.35
VPS13C-204ENST00000395898 HSP90AA2PQ14568 343 aaPredicted RBP6.61□□□□□ -1.35
VPS13C-204ENST00000395898 SMC3Q9UQE7 1217 aa6.61□□□□□ -1.35
VPS13C-204ENST00000395898 RALYLQ86SE5 291 aaKnown RBP6.61□□□□□ -1.35
VPS13C-204ENST00000395898 CASKIN1Q8WXD9 1431 aa6.61□□□□□ -1.35
VPS13C-204ENST00000395898 BRD4O60885 1362 aaPredicted RBP6.61□□□□□ -1.35
VPS13C-204ENST00000395898 PCMTD1Q96MG8 357 aaPredicted RBP6.61□□□□□ -1.35
VPS13C-204ENST00000395898 NFXL1Q6ZNB6 911 aa6.6□□□□□ -1.35
VPS13C-204ENST00000395898 RIC3Q7Z5B4 369 aa6.6□□□□□ -1.35
VPS13C-204ENST00000395898 BICD2Q8TD16 824 aa6.6□□□□□ -1.35
VPS13C-204ENST00000395898 EHBP1L1Q8N3D4 1523 aa6.6□□□□□ -1.35
VPS13C-204ENST00000395898 MSH5O43196 834 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms