RNA–Protein interactions for RNA: ENST00000393357.6

PHTF1-205, Transcript of putative homeodomain transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PHTF1, Length 3,244 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHTF1-205ENST00000393357 E9PSI1 815 aa20.78■□□□□ 0.92
PHTF1-205ENST00000393357 AMER1Q5JTC6 1135 aaPredicted RBP20.78■□□□□ 0.92
PHTF1-205ENST00000393357 DNMT1P26358 1616 aaKnown RBP20.78■□□□□ 0.92
PHTF1-205ENST00000393357 RBM10P98175 930 aaKnown RBP20.78■□□□□ 0.92
PHTF1-205ENST00000393357 TPRNQ4KMQ1 711 aa20.78■□□□□ 0.92
PHTF1-205ENST00000393357 C22orf23Q9BZE7 217 aa20.77■□□□□ 0.92
PHTF1-205ENST00000393357 GPATCH8Q9UKJ3 1502 aaKnown RBP20.77■□□□□ 0.92
PHTF1-205ENST00000393357 BLMP54132 1417 aaPredicted RBP20.76■□□□□ 0.91
PHTF1-205ENST00000393357 ANTXR1Q9H6X2 564 aa20.76■□□□□ 0.91
PHTF1-205ENST00000393357 CGNL1Q0VF96 1302 aa20.76■□□□□ 0.91
PHTF1-205ENST00000393357 MAPK8IP3Q9UPT6 1336 aa20.76■□□□□ 0.91
PHTF1-205ENST00000393357 TSR2Q969E8 191 aaKnown RBP20.75■□□□□ 0.91
PHTF1-205ENST00000393357 IFT140Q96RY7 1462 aa20.75■□□□□ 0.91
PHTF1-205ENST00000393357 WWC1Q8IX03 1113 aa20.74■□□□□ 0.91
PHTF1-205ENST00000393357 TBC1D32Q96NH3 1257 aa20.74■□□□□ 0.91
PHTF1-205ENST00000393357 WDR62O43379 1518 aa20.74■□□□□ 0.91
PHTF1-205ENST00000393357 ERBB4Q15303 1308 aa20.74■□□□□ 0.91
PHTF1-205ENST00000393357 ITPRIPQ8IWB1 547 aa20.74■□□□□ 0.91
PHTF1-205ENST00000393357 POLR1AO95602 1720 aaPredicted RBP20.73■□□□□ 0.91
PHTF1-205ENST00000393357 UHRF1BP1Q6BDS2 1440 aa20.73■□□□□ 0.91
PHTF1-205ENST00000393357 HSCBQ8IWL3 235 aa20.73■□□□□ 0.91
PHTF1-205ENST00000393357 GRPEL1Q9HAV7 217 aa20.73■□□□□ 0.91
PHTF1-205ENST00000393357 PRAG1Q86YV5 1406 aa20.73■□□□□ 0.91
PHTF1-205ENST00000393357 ZMYM4Q5VZL5 1548 aa20.72■□□□□ 0.91
PHTF1-205ENST00000393357 ZNF608Q9ULD9 1512 aaPredicted RBP20.72■□□□□ 0.91
PHTF1-205ENST00000393357 TROQ12816 1431 aaPredicted RBP20.72■□□□□ 0.91
PHTF1-205ENST00000393357 HSP90AB1P08238 724 aaKnown RBP20.72■□□□□ 0.91
PHTF1-205ENST00000393357 ZNF521Q96K83 1311 aa20.71■□□□□ 0.91
PHTF1-205ENST00000393357 ESPNB1AK53 854 aa20.71■□□□□ 0.91
PHTF1-205ENST00000393357 SAFB2Q14151 953 aaKnown RBP eCLIP20.71■□□□□ 0.91
PHTF1-205ENST00000393357 TCP11L2Q8N4U5 519 aa20.7■□□□□ 0.9
PHTF1-205ENST00000393357 LNPKQ9C0E8 428 aa20.7■□□□□ 0.9
PHTF1-205ENST00000393357 CHMP5Q9NZZ3 219 aa20.69■□□□□ 0.9
PHTF1-205ENST00000393357 MAGI2Q86UL8 1455 aa20.69■□□□□ 0.9
PHTF1-205ENST00000393357 NKTRP30414 1462 aaKnown RBP20.69■□□□□ 0.9
PHTF1-205ENST00000393357 MORC1Q86VD1 984 aa20.68■□□□□ 0.9
PHTF1-205ENST00000393357 GAS2L3Q86XJ1 694 aa20.68■□□□□ 0.9
PHTF1-205ENST00000393357 JPH4Q96JJ6 628 aa20.68■□□□□ 0.9
PHTF1-205ENST00000393357 RWDD1Q9H446 243 aaPredicted RBP20.68■□□□□ 0.9
PHTF1-205ENST00000393357 RARSP54136 660 aaKnown RBP20.68■□□□□ 0.9
PHTF1-205ENST00000393357 PMFBP1Q8TBY8 1022 aa20.68■□□□□ 0.9
PHTF1-205ENST00000393357 U2SURPO15042 1029 aaKnown RBP20.68■□□□□ 0.9
PHTF1-205ENST00000393357 NUTM2DQ5VT03 806 aaPredicted RBP20.67■□□□□ 0.9
PHTF1-205ENST00000393357 U2AF1L5P0DN76 240 aaPredicted RBP20.66■□□□□ 0.9
PHTF1-205ENST00000393357 U2AF1Q01081 240 aaKnown RBP eCLIP20.66■□□□□ 0.9
PHTF1-205ENST00000393357 CFAP70Q5T0N1 1121 aa20.66■□□□□ 0.9
PHTF1-205ENST00000393357 FOXD4L5Q5VV16 416 aaPredicted RBP20.66■□□□□ 0.9
PHTF1-205ENST00000393357 FOXD4L4Q8WXT5 416 aaPredicted RBP20.66■□□□□ 0.9
PHTF1-205ENST00000393357 SMC4Q9NTJ3 1288 aa20.66■□□□□ 0.9
PHTF1-205ENST00000393357 CLCN1P35523 988 aa20.66■□□□□ 0.9
PHTF1-205ENST00000393357 RBM42Q9BTD8 480 aaKnown RBP20.66■□□□□ 0.9
PHTF1-205ENST00000393357 PDE3AQ14432 1141 aa20.65■□□□□ 0.9
PHTF1-205ENST00000393357 MPNDQ8N594 471 aa20.65■□□□□ 0.9
PHTF1-205ENST00000393357 EIF3AQ14152 1382 aaKnown RBP20.64■□□□□ 0.9
PHTF1-205ENST00000393357 MRE11P49959 708 aa20.64■□□□□ 0.89
PHTF1-205ENST00000393357 CARD14Q9BXL6 1004 aa20.64■□□□□ 0.89
PHTF1-205ENST00000393357 FAM13BQ9NYF5 915 aa20.64■□□□□ 0.89
PHTF1-205ENST00000393357 C1orf115Q9H7X2 142 aa20.63■□□□□ 0.89
PHTF1-205ENST00000393357 COL17A1Q9UMD9 1497 aaPredicted RBP20.62■□□□□ 0.89
PHTF1-205ENST00000393357 DISP1Q96F81 1524 aa20.62■□□□□ 0.89
PHTF1-205ENST00000393357 SLC12A5Q9H2X9 1139 aa20.62■□□□□ 0.89
PHTF1-205ENST00000393357 TNPO1Q92973 898 aaKnown RBP20.62■□□□□ 0.89
PHTF1-205ENST00000393357 TRAK1Q9UPV9 953 aa20.62■□□□□ 0.89
PHTF1-205ENST00000393357 ELL2O00472 640 aaPredicted RBP20.61■□□□□ 0.89
PHTF1-205ENST00000393357 A2MP01023 1474 aa20.61■□□□□ 0.89
PHTF1-205ENST00000393357 APBB1O00213 710 aa20.61■□□□□ 0.89
PHTF1-205ENST00000393357 KIAA0556O60303 1618 aa20.6■□□□□ 0.89
PHTF1-205ENST00000393357 KIAA1211Q6ZU35 1233 aa20.6■□□□□ 0.89
PHTF1-205ENST00000393357 MTHFSP49914 203 aa20.59■□□□□ 0.89
PHTF1-205ENST00000393357 EIF4G3O43432 1585 aaKnown RBP20.59■□□□□ 0.89
PHTF1-205ENST00000393357 FSD2A1L4K1 749 aa20.59■□□□□ 0.89
PHTF1-205ENST00000393357 GRIN2AQ12879 1464 aa20.58■□□□□ 0.89
PHTF1-205ENST00000393357 CDCA8Q53HL2 280 aa20.58■□□□□ 0.89
PHTF1-205ENST00000393357 TRMT2AQ8IZ69 625 aaKnown RBP20.58■□□□□ 0.89
PHTF1-205ENST00000393357 FOXD4L6Q3SYB3 417 aaPredicted RBP20.58■□□□□ 0.88
PHTF1-205ENST00000393357 FOXD4L3Q6VB84 417 aaPredicted RBP20.58■□□□□ 0.88
PHTF1-205ENST00000393357 CHAMP1Q96JM3 812 aa20.57■□□□□ 0.88
PHTF1-205ENST00000393357 DZIP1LQ8IYY4 767 aaKnown RBP20.57■□□□□ 0.88
PHTF1-205ENST00000393357 EXOSC9Q06265 439 aaKnown RBP20.56■□□□□ 0.88
PHTF1-205ENST00000393357 CD2BP2O95400 341 aaKnown RBP20.56■□□□□ 0.88
PHTF1-205ENST00000393357 R3HCC1Q9Y3T6 440 aaKnown RBP20.56■□□□□ 0.88
PHTF1-205ENST00000393357 DDX49Q9Y6V7 483 aaKnown RBP20.56■□□□□ 0.88
PHTF1-205ENST00000393357 SSFA2P28290 1259 aa20.55■□□□□ 0.88
PHTF1-205ENST00000393357 TMEM132EQ6IEE7 984 aa20.55■□□□□ 0.88
PHTF1-205ENST00000393357 ANP32BQ92688 251 aaKnown RBP20.55■□□□□ 0.88
PHTF1-205ENST00000393357 RRP9O43818 475 aaKnown RBP20.54■□□□□ 0.88
PHTF1-205ENST00000393357 PLEKHH2Q8IVE3 1493 aa20.54■□□□□ 0.88
PHTF1-205ENST00000393357 ANKRD45Q5TZF3 282 aa20.54■□□□□ 0.88
PHTF1-205ENST00000393357 ZKSCAN2Q63HK3 967 aa20.54■□□□□ 0.88
PHTF1-205ENST00000393357 DDX11L8A8MPP1 907 aa20.53■□□□□ 0.88
PHTF1-205ENST00000393357 MVPQ14764 893 aaKnown RBP20.53■□□□□ 0.88
PHTF1-205ENST00000393357 MSNP26038 577 aaKnown RBP20.52■□□□□ 0.88
PHTF1-205ENST00000393357 FAM135AQ9P2D6 1515 aa20.51■□□□□ 0.87
PHTF1-205ENST00000393357 NOB1Q9ULX3 412 aaKnown RBP20.51■□□□□ 0.87
PHTF1-205ENST00000393357 RAPGEF6Q8TEU7 1601 aa20.51■□□□□ 0.87
PHTF1-205ENST00000393357 ARHGEF12Q9NZN5 1544 aa20.51■□□□□ 0.87
PHTF1-205ENST00000393357 PLA2R1Q13018 1463 aa20.51■□□□□ 0.87
PHTF1-205ENST00000393357 NASPP49321 788 aaPredicted RBP20.51■□□□□ 0.87
PHTF1-205ENST00000393357 RUNDC1Q96C34 613 aa20.51■□□□□ 0.87
PHTF1-205ENST00000393357 PRDM10Q9NQV6 1147 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms