RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 SCAF11Q99590 1463 aaKnown RBP34.7■■■■□ 3.15
SHOX2-201ENST00000389589 TESK2Q96S53 571 aa34.7■■■■□ 3.15
SHOX2-201ENST00000389589 RPGRIP1LQ68CZ1 1315 aa34.67■■■■□ 3.14
SHOX2-201ENST00000389589 PPP6R1Q9UPN7 881 aa34.66■■■■□ 3.14
SHOX2-201ENST00000389589 PREX1Q8TCU6 1659 aa34.66■■■■□ 3.14
SHOX2-201ENST00000389589 ARHGEF40Q8TER5 1519 aa34.65■■■■□ 3.14
SHOX2-201ENST00000389589 CHGAP10645 457 aaKnown RBP34.64■■■■□ 3.14
SHOX2-201ENST00000389589 TMF1P82094 1093 aa34.63■■■■□ 3.13
SHOX2-201ENST00000389589 ADGRF5Q8IZF2 1346 aa34.63■■■■□ 3.13
SHOX2-201ENST00000389589 EIF3AQ14152 1382 aaKnown RBP34.62■■■■□ 3.13
SHOX2-201ENST00000389589 DISP3Q9P2K9 1392 aa34.59■■■■□ 3.13
SHOX2-201ENST00000389589 SLC52A1Q9NWF4 448 aa34.58■■■■□ 3.13
SHOX2-201ENST00000389589 SETBP1Q9Y6X0 1596 aa34.58■■■■□ 3.13
SHOX2-201ENST00000389589 CFAP70Q5T0N1 1121 aa34.55■■■■□ 3.12
SHOX2-201ENST00000389589 KTN1Q86UP2 1357 aaKnown RBP34.54■■■■□ 3.12
SHOX2-201ENST00000389589 PIK3C2GO75747 1445 aa34.54■■■■□ 3.12
SHOX2-201ENST00000389589 CLTCQ00610 1675 aaKnown RBP34.52■■■■□ 3.12
SHOX2-201ENST00000389589 SLC24A1O60721 1099 aa34.51■■■■□ 3.11
SHOX2-201ENST00000389589 NEXMIFQ5QGS0 1516 aa34.5■■■■□ 3.11
SHOX2-201ENST00000389589 MRS2Q9HD23 443 aa34.5■■■■□ 3.11
SHOX2-201ENST00000389589 CDCA8Q53HL2 280 aa34.49■■■■□ 3.11
SHOX2-201ENST00000389589 IDI1Q13907 227 aa34.48■■■■□ 3.11
SHOX2-201ENST00000389589 ERVK-7P63135 1459 aa34.47■■■■□ 3.11
SHOX2-201ENST00000389589 MYO3AQ8NEV4 1616 aa34.47■■■■□ 3.11
SHOX2-201ENST00000389589 MYO5BQ9ULV0 1848 aa34.47■■■■□ 3.11
SHOX2-201ENST00000389589 CCDC184Q52MB2 194 aa34.46■■■■□ 3.11
SHOX2-201ENST00000389589 TMEM131LA2VDJ0 1609 aa34.46■■■■□ 3.11
SHOX2-201ENST00000389589 C14orf93Q9H972 538 aaKnown RBP34.45■■■■□ 3.1
SHOX2-201ENST00000389589 VGFO15240 615 aaPredicted RBP34.44■■■■□ 3.1
SHOX2-201ENST00000389589 RALBP1Q15311 655 aa34.42■■■■□ 3.1
SHOX2-201ENST00000389589 ZFYVE9O95405 1425 aa34.42■■■■□ 3.1
SHOX2-201ENST00000389589 KDM5AP29375 1690 aaKnown RBP34.4■■■■□ 3.1
SHOX2-201ENST00000389589 ADGRB1O14514 1584 aa34.39■■■■□ 3.1
SHOX2-201ENST00000389589 SPATA31D1Q6ZQQ2 1576 aa34.38■■■■□ 3.09
SHOX2-201ENST00000389589 PER1O15534 1290 aaPredicted RBP34.38■■■■□ 3.09
SHOX2-201ENST00000389589 SBNO2Q9Y2G9 1366 aa34.36■■■■□ 3.09
SHOX2-201ENST00000389589 HNRNPUQ00839 825 aaKnown RBP eCLIP34.35■■■■□ 3.09
SHOX2-201ENST00000389589 FBXO31Q5XUX0 539 aaPredicted RBP34.35■■■■□ 3.09
SHOX2-201ENST00000389589 DNAJC5Q9H3Z4 198 aa34.34■■■■□ 3.09
SHOX2-201ENST00000389589 PANK3Q9H999 370 aa34.33■■■■□ 3.09
SHOX2-201ENST00000389589 MYBBP1AQ9BQG0 1328 aaKnown RBP34.33■■■■□ 3.09
SHOX2-201ENST00000389589 CNGB1Q14028 1251 aaPredicted RBP34.31■■■■□ 3.08
SHOX2-201ENST00000389589 FAM9BQ8IZU0 186 aa34.31■■■■□ 3.08
SHOX2-201ENST00000389589 MYOM1P52179 1685 aa34.31■■■■□ 3.08
SHOX2-201ENST00000389589 PARD3Q8TEW0 1356 aa34.31■■■■□ 3.08
SHOX2-201ENST00000389589 MLECQ14165 292 aa34.3■■■■□ 3.08
SHOX2-201ENST00000389589 BRD4O60885 1362 aaPredicted RBP34.28■■■■□ 3.08
SHOX2-201ENST00000389589 CENPJQ9HC77 1338 aaPredicted RBP34.28■■■■□ 3.08
SHOX2-201ENST00000389589 QRICH2Q9H0J4 1663 aa34.27■■■■□ 3.08
SHOX2-201ENST00000389589 ESF1Q9H501 851 aaKnown RBP34.27■■■■□ 3.08
SHOX2-201ENST00000389589 TMC1Q8TDI8 760 aa34.23■■■■□ 3.07
SHOX2-201ENST00000389589 NUTM2DQ5VT03 806 aaPredicted RBP34.23■■■■□ 3.07
SHOX2-201ENST00000389589 ARHGEF28Q8N1W1 1705 aaKnown RBP34.22■■■■□ 3.07
SHOX2-201ENST00000389589 TRAK1Q9UPV9 953 aa34.21■■■■□ 3.07
SHOX2-201ENST00000389589 STAG3Q9UJ98 1225 aa34.21■■■■□ 3.07
SHOX2-201ENST00000389589 TMEM132EQ6IEE7 984 aa34.2■■■■□ 3.07
SHOX2-201ENST00000389589 ZMYM3Q14202 1370 aa34.2■■■■□ 3.07
SHOX2-201ENST00000389589 NLRP13Q86W25 1043 aa34.18■■■■□ 3.06
SHOX2-201ENST00000389589 A2ML1A8K2U0 1454 aa34.17■■■■□ 3.06
SHOX2-201ENST00000389589 PNISRQ8TF01 805 aaKnown RBP34.16■■■■□ 3.06
SHOX2-201ENST00000389589 KNSTRNQ9Y448 316 aa34.16■■■■□ 3.06
SHOX2-201ENST00000389589 ZBED9Q6R2W3 1325 aa34.14■■■■□ 3.06
SHOX2-201ENST00000389589 CC2D1BQ5T0F9 858 aaKnown RBP34.12■■■■□ 3.05
SHOX2-201ENST00000389589 ASXL1Q8IXJ9 1541 aa34.12■■■■□ 3.05
SHOX2-201ENST00000389589 NPC1L1Q9UHC9 1359 aa34.1■■■■□ 3.05
SHOX2-201ENST00000389589 LRPPRCP42704 1394 aaKnown RBP34.08■■■■□ 3.05
SHOX2-201ENST00000389589 ALKQ9UM73 1620 aa34.08■■■■□ 3.05
SHOX2-201ENST00000389589 RIMS2Q9UQ26 1411 aa34.06■■■■□ 3.04
SHOX2-201ENST00000389589 PUS7Q96PZ0 661 aaKnown RBP34.06■■■■□ 3.04
SHOX2-201ENST00000389589 AMER1Q5JTC6 1135 aaPredicted RBP34.05■■■■□ 3.04
SHOX2-201ENST00000389589 TRHP20396 242 aaPredicted RBP34.03■■■■□ 3.04
SHOX2-201ENST00000389589 TNRQ92752 1358 aa34.03■■■■□ 3.04
SHOX2-201ENST00000389589 YTHDC2Q9H6S0 1430 aaKnown RBP34■■■■□ 3.03
SHOX2-201ENST00000389589 EVC2Q86UK5 1308 aa34■■■■□ 3.03
SHOX2-201ENST00000389589 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.99■■■■□ 3.03
SHOX2-201ENST00000389589 SUPT16HQ9Y5B9 1047 aaKnown RBP33.98■■■■□ 3.03
SHOX2-201ENST00000389589 PTPRMP28827 1452 aa33.97■■■■□ 3.03
SHOX2-201ENST00000389589 SETD1AO15047 1707 aaKnown RBP33.97■■■■□ 3.03
SHOX2-201ENST00000389589 TULP4Q9NRJ4 1543 aa33.97■■■■□ 3.03
SHOX2-201ENST00000389589 UBR1Q8IWV7 1749 aa33.95■■■■□ 3.03
SHOX2-201ENST00000389589 HDGFP51858 240 aaKnown RBP33.94■■■■□ 3.02
SHOX2-201ENST00000389589 INSRP06213 1382 aa33.94■■■■□ 3.02
SHOX2-201ENST00000389589 STK26Q9P289 416 aa33.93■■■■□ 3.02
SHOX2-201ENST00000389589 NEFLP07196 543 aa33.92■■■■□ 3.02
SHOX2-201ENST00000389589 FER1L4A9Z1Z3 1794 aa33.92■■■■□ 3.02
SHOX2-201ENST00000389589 DLC1Q96QB1 1528 aa33.9■■■■□ 3.02
SHOX2-201ENST00000389589 CARD14Q9BXL6 1004 aa33.89■■■■□ 3.02
SHOX2-201ENST00000389589 NRXN3Q9Y4C0 1643 aa33.89■■■■□ 3.02
SHOX2-201ENST00000389589 PPP2R1AP30153 589 aa33.89■■■■□ 3.02
SHOX2-201ENST00000389589 NLRP1Q9C000 1473 aa33.89■■■■□ 3.02
SHOX2-201ENST00000389589 C3P01024 1663 aa33.88■■■■□ 3.01
SHOX2-201ENST00000389589 USP32Q8NFA0 1604 aa33.88■■■■□ 3.01
SHOX2-201ENST00000389589 SENP3Q9H4L4 574 aaPredicted RBP33.87■■■■□ 3.01
SHOX2-201ENST00000389589 POGKQ9P215 609 aa33.85■■■■□ 3.01
SHOX2-201ENST00000389589 NINLQ9Y2I6 1382 aa33.84■■■■□ 3.01
SHOX2-201ENST00000389589 PRAM1Q96QH2 718 aa33.84■■■■□ 3.01
SHOX2-201ENST00000389589 SLC12A5Q9H2X9 1139 aa33.83■■■■□ 3.01
SHOX2-201ENST00000389589 TMEM2Q9UHN6 1383 aa33.82■■■■□ 3
SHOX2-201ENST00000389589 FKBP8Q14318 412 aa33.81■■■■□ 3
SHOX2-201ENST00000389589 NSD3Q9BZ95 1437 aa33.81■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms