RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 SLC52A1Q9NWF4 448 aa11.86□□□□□ -0.51
PTPRA-204ENST00000380393 PATL2C9JE40 543 aaKnown RBP11.86□□□□□ -0.51
PTPRA-204ENST00000380393 IRX5P78411 483 aaPredicted RBP11.86□□□□□ -0.51
PTPRA-204ENST00000380393 FAM193AP78312 1265 aa11.85□□□□□ -0.51
PTPRA-204ENST00000380393 EIF4G2P78344 907 aaKnown RBP eCLIP11.85□□□□□ -0.51
PTPRA-204ENST00000380393 DNAJC2Q99543 621 aaKnown RBP11.85□□□□□ -0.51
PTPRA-204ENST00000380393 FAM161AQ3B820 660 aa11.85□□□□□ -0.51
PTPRA-204ENST00000380393 KIF14Q15058 1648 aa11.84□□□□□ -0.51
PTPRA-204ENST00000380393 RRP1P56182 461 aaKnown RBP11.84□□□□□ -0.51
PTPRA-204ENST00000380393 CFDP1Q9UEE9 299 aaPredicted RBP11.84□□□□□ -0.51
PTPRA-204ENST00000380393 FGD6Q6ZV73 1430 aa11.84□□□□□ -0.51
PTPRA-204ENST00000380393 KCNJ4P48050 445 aa11.84□□□□□ -0.51
PTPRA-204ENST00000380393 PRKRIP1Q9H875 184 aaPredicted RBP11.84□□□□□ -0.51
PTPRA-204ENST00000380393 ARHGEF11O15085 1522 aa11.83□□□□□ -0.52
PTPRA-204ENST00000380393 BECN1Q14457 450 aa11.83□□□□□ -0.52
PTPRA-204ENST00000380393 NGEFQ8N5V2 710 aa11.83□□□□□ -0.52
PTPRA-204ENST00000380393 RRP7BPQ9NSQ0 103 aa11.83□□□□□ -0.52
PTPRA-204ENST00000380393 TROQ12816 1431 aaPredicted RBP11.83□□□□□ -0.52
PTPRA-204ENST00000380393 CHMP4CQ96CF2 233 aa11.83□□□□□ -0.52
PTPRA-204ENST00000380393 EHBP1L1Q8N3D4 1523 aa11.82□□□□□ -0.52
PTPRA-204ENST00000380393 TRAK2O60296 914 aa11.82□□□□□ -0.52
PTPRA-204ENST00000380393 MMP14P50281 582 aa11.82□□□□□ -0.52
PTPRA-204ENST00000380393 MYOM3Q5VTT5 1437 aa11.82□□□□□ -0.52
PTPRA-204ENST00000380393 ABCC2Q92887 1545 aa11.82□□□□□ -0.52
PTPRA-204ENST00000380393 PTPRKQ15262 1439 aa11.81□□□□□ -0.52
PTPRA-204ENST00000380393 IGSF3O75054 1194 aa11.81□□□□□ -0.52
PTPRA-204ENST00000380393 ZBTB9Q96C00 473 aa11.81□□□□□ -0.52
PTPRA-204ENST00000380393 MCM4P33991 863 aa11.81□□□□□ -0.52
PTPRA-204ENST00000380393 ZNF771Q7L3S4 317 aaPredicted RBP11.81□□□□□ -0.52
PTPRA-204ENST00000380393 ISY1Q9ULR0 285 aaKnown RBP11.81□□□□□ -0.52
PTPRA-204ENST00000380393 ADCY10Q96PN6 1610 aa11.8□□□□□ -0.52
PTPRA-204ENST00000380393 HNRNPMP52272 730 aaKnown RBP eCLIP11.8□□□□□ -0.524e-7■■■■■ 28.7
PTPRA-204ENST00000380393 SUPT6HQ7KZ85 1726 aaKnown RBP11.8□□□□□ -0.52
PTPRA-204ENST00000380393 NPM1P06748 294 aaKnown RBP eCLIP11.8□□□□□ -0.52
PTPRA-204ENST00000380393 C8orf34Q49A92 452 aa11.8□□□□□ -0.52
PTPRA-204ENST00000380393 SLC20A2Q08357 652 aa11.79□□□□□ -0.52
PTPRA-204ENST00000380393 PSEN1P49768 467 aa11.79□□□□□ -0.52
PTPRA-204ENST00000380393 CCDC173Q0VFZ6 552 aa11.78□□□□□ -0.52
PTPRA-204ENST00000380393 TMED8Q6PL24 325 aaPredicted RBP11.78□□□□□ -0.52
PTPRA-204ENST00000380393 SOX12O15370 315 aa11.78□□□□□ -0.52
PTPRA-204ENST00000380393 PTMSP20962 102 aa11.77□□□□□ -0.52
PTPRA-204ENST00000380393 XPCQ01831 940 aaPredicted RBP11.77□□□□□ -0.52
PTPRA-204ENST00000380393 ZNF622Q969S3 477 aaKnown RBP eCLIP11.77□□□□□ -0.535e-6■■□□□ 11.7
PTPRA-204ENST00000380393 GPATCH8Q9UKJ3 1502 aaKnown RBP11.77□□□□□ -0.53
PTPRA-204ENST00000380393 ZCCHC11Q5TAX3 1644 aaKnown RBP11.76□□□□□ -0.53
PTPRA-204ENST00000380393 PTMAP06454 111 aaKnown RBP11.76□□□□□ -0.53
PTPRA-204ENST00000380393 SASS6Q6UVJ0 657 aa11.76□□□□□ -0.53
PTPRA-204ENST00000380393 TRIM6-TRIM34B2RNG4 842 aa11.75□□□□□ -0.53
PTPRA-204ENST00000380393 TRIM34Q9BYJ4 488 aa11.75□□□□□ -0.53
PTPRA-204ENST00000380393 ATP2B3Q16720 1220 aa11.75□□□□□ -0.53
PTPRA-204ENST00000380393 AXDND1Q5T1B0 1012 aaPredicted RBP11.75□□□□□ -0.53
PTPRA-204ENST00000380393 RIMBP3CA6NJZ7 1639 aa11.75□□□□□ -0.53
PTPRA-204ENST00000380393 RIMBP3BA6NNM3 1639 aa11.75□□□□□ -0.53
PTPRA-204ENST00000380393 RIMBP3Q9UFD9 1639 aa11.75□□□□□ -0.53
PTPRA-204ENST00000380393 ANTXR1Q9H6X2 564 aa11.75□□□□□ -0.53
PTPRA-204ENST00000380393 KDM5BQ9UGL1 1544 aa11.74□□□□□ -0.53
PTPRA-204ENST00000380393 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.74□□□□□ -0.53
PTPRA-204ENST00000380393 ASXL2Q76L83 1435 aa11.74□□□□□ -0.53
PTPRA-204ENST00000380393 CNTLNQ9NXG0 1405 aa11.74□□□□□ -0.53
PTPRA-204ENST00000380393 KTN1Q86UP2 1357 aaKnown RBP11.74□□□□□ -0.53
PTPRA-204ENST00000380393 RCAN3Q9UKA8 241 aa11.74□□□□□ -0.53
PTPRA-204ENST00000380393 PTPN23Q9H3S7 1636 aa11.73□□□□□ -0.53
PTPRA-204ENST00000380393 CC2D1BQ5T0F9 858 aaKnown RBP11.73□□□□□ -0.53
PTPRA-204ENST00000380393 SPDYE4A6NLX3 237 aa11.73□□□□□ -0.53
PTPRA-204ENST00000380393 CSPP1Q1MSJ5 1256 aa11.73□□□□□ -0.53
PTPRA-204ENST00000380393 ABCC10Q5T3U5 1492 aa11.72□□□□□ -0.53
PTPRA-204ENST00000380393 GAS2L3Q86XJ1 694 aa11.72□□□□□ -0.53
PTPRA-204ENST00000380393 RALBP1Q15311 655 aa11.72□□□□□ -0.53
PTPRA-204ENST00000380393 TTC37Q6PGP7 1564 aa11.72□□□□□ -0.53
PTPRA-204ENST00000380393 PPP1R9BQ96SB3 815 aa11.72□□□□□ -0.53
PTPRA-204ENST00000380393 UHRF1BP1LA0JNW5 1464 aa11.71□□□□□ -0.53
PTPRA-204ENST00000380393 L3MBTL2Q969R5 705 aa11.71□□□□□ -0.53
PTPRA-204ENST00000380393 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.71□□□□□ -0.53
PTPRA-204ENST00000380393 SPRYD3Q8NCJ5 442 aa11.71□□□□□ -0.54
PTPRA-204ENST00000380393 NBPF1Q3BBV0 1214 aa11.71□□□□□ -0.54
PTPRA-204ENST00000380393 ZNF500O60304 480 aaPredicted RBP11.7□□□□□ -0.54
PTPRA-204ENST00000380393 CCDC66A2RUB6 948 aa11.7□□□□□ -0.54
PTPRA-204ENST00000380393 PRR29P0C7W0 189 aa11.7□□□□□ -0.54
PTPRA-204ENST00000380393 NASPP49321 788 aaPredicted RBP11.7□□□□□ -0.54
PTPRA-204ENST00000380393 GEMIN8Q9NWZ8 242 aaKnown RBP11.7□□□□□ -0.54
PTPRA-204ENST00000380393 AFAP1Q8N556 730 aa11.69□□□□□ -0.54
PTPRA-204ENST00000380393 TIGD1Q96MW7 591 aa11.69□□□□□ -0.54
PTPRA-204ENST00000380393 PANK3Q9H999 370 aa11.69□□□□□ -0.54
PTPRA-204ENST00000380393 CAMSAP2Q08AD1 1489 aa11.69□□□□□ -0.54
PTPRA-204ENST00000380393 YY1AP1Q9H869 796 aa11.69□□□□□ -0.54
PTPRA-204ENST00000380393 ABCC5O15440 1437 aa11.68□□□□□ -0.54
PTPRA-204ENST00000380393 TSC1Q92574 1164 aa11.68□□□□□ -0.54
PTPRA-204ENST00000380393 WDR7Q9Y4E6 1490 aa11.68□□□□□ -0.54
PTPRA-204ENST00000380393 DDX11L8A8MPP1 907 aa11.68□□□□□ -0.54
PTPRA-204ENST00000380393 CRBNQ96SW2 442 aa11.68□□□□□ -0.54
PTPRA-204ENST00000380393 GRIPAP1Q4V328 841 aa11.68□□□□□ -0.54
PTPRA-204ENST00000380393 CCDC7Q96M83 1385 aa11.68□□□□□ -0.54
PTPRA-204ENST00000380393 ARHGAP5Q13017 1502 aa11.67□□□□□ -0.54
PTPRA-204ENST00000380393 JARID2Q92833 1246 aaPredicted RBP11.67□□□□□ -0.54
PTPRA-204ENST00000380393 LOC102724159A0A0B4J2E5 919 aa11.67□□□□□ -0.54
PTPRA-204ENST00000380393 PLIN1O60240 522 aa11.67□□□□□ -0.54
PTPRA-204ENST00000380393 FAM69CQ0P6D2 419 aa11.67□□□□□ -0.54
PTPRA-204ENST00000380393 PWP2Q15269 919 aaKnown RBP11.67□□□□□ -0.54
PTPRA-204ENST00000380393 FAM43BQ6ZT52 329 aaPredicted RBP11.67□□□□□ -0.54
PTPRA-204ENST00000380393 NOL7Q9UMY1 257 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms