RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 MRC2Q9UBG0 1479 aa8.19□□□□□ -1.1
SMC1A-202ENST00000375340 WASHC2CQ9Y4E1 1318 aa8.19□□□□□ -1.1
SMC1A-202ENST00000375340 FRAT2O75474 233 aaPredicted RBP8.19□□□□□ -1.1
SMC1A-202ENST00000375340 MINK1Q8N4C8 1332 aaPredicted RBP8.19□□□□□ -1.1
SMC1A-202ENST00000375340 DDX11L8A8MPP1 907 aa8.19□□□□□ -1.1
SMC1A-202ENST00000375340 ABCC5O15440 1437 aa8.18□□□□□ -1.1
SMC1A-202ENST00000375340 ARHGEF11O15085 1522 aa8.18□□□□□ -1.1
SMC1A-202ENST00000375340 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.18□□□□□ -1.1
SMC1A-202ENST00000375340 LAMC3Q9Y6N6 1575 aa8.18□□□□□ -1.1
SMC1A-202ENST00000375340 NUTM2FA1L443 756 aa8.18□□□□□ -1.1
SMC1A-202ENST00000375340 C20orf194Q5TEA3 1177 aa8.18□□□□□ -1.1
SMC1A-202ENST00000375340 UGGT2Q9NYU1 1516 aa8.18□□□□□ -1.1
SMC1A-202ENST00000375340 ZRSR1Q15695 479 aaKnown RBP8.18□□□□□ -1.1
SMC1A-202ENST00000375340 BACH2Q9BYV9 841 aa8.17□□□□□ -1.1
SMC1A-202ENST00000375340 ANKRD30BQ9BXX2 1392 aa8.17□□□□□ -1.1
SMC1A-202ENST00000375340 RSPH4AQ5TD94 716 aa8.17□□□□□ -1.1
SMC1A-202ENST00000375340 TERF2IPQ9NYB0 399 aa8.17□□□□□ -1.1
SMC1A-202ENST00000375340 PTMSP20962 102 aa8.17□□□□□ -1.1
SMC1A-202ENST00000375340 CABP2Q9NPB3 220 aa8.17□□□□□ -1.1
SMC1A-202ENST00000375340 RSPH6AQ9H0K4 717 aa8.17□□□□□ -1.1
SMC1A-202ENST00000375340 FGD1P98174 961 aa8.17□□□□□ -1.1
SMC1A-202ENST00000375340 RUNDC1Q96C34 613 aa8.17□□□□□ -1.1
SMC1A-202ENST00000375340 AMER1Q5JTC6 1135 aaPredicted RBP8.16□□□□□ -1.1
SMC1A-202ENST00000375340 DZIP1LQ8IYY4 767 aaKnown RBP8.16□□□□□ -1.1
SMC1A-202ENST00000375340 CALD1Q05682 793 aaKnown RBP8.16□□□□□ -1.1
SMC1A-202ENST00000375340 TMEM132EQ6IEE7 984 aa8.16□□□□□ -1.1
SMC1A-202ENST00000375340 ITSN2Q9NZM3 1697 aa8.16□□□□□ -1.1
SMC1A-202ENST00000375340 URB2Q14146 1524 aaKnown RBP8.16□□□□□ -1.1
SMC1A-202ENST00000375340 EVC2Q86UK5 1308 aa8.15□□□□□ -1.1
SMC1A-202ENST00000375340 RIPK4P57078 832 aa8.15□□□□□ -1.1
SMC1A-202ENST00000375340 TROQ12816 1431 aaPredicted RBP8.15□□□□□ -1.1
SMC1A-202ENST00000375340 RAPGEF6Q8TEU7 1601 aa8.15□□□□□ -1.11
SMC1A-202ENST00000375340 GOLGA6L4A6NEF3 574 aa8.15□□□□□ -1.11
SMC1A-202ENST00000375340 C1orf115Q9H7X2 142 aa8.15□□□□□ -1.11
SMC1A-202ENST00000375340 PBRM1Q86U86 1689 aa8.15□□□□□ -1.11
SMC1A-202ENST00000375340 SYNJ2O15056 1496 aa8.15□□□□□ -1.11
SMC1A-202ENST00000375340 HMOX1P09601 288 aa8.14□□□□□ -1.11
SMC1A-202ENST00000375340 NECTIN2Q92692 538 aa8.14□□□□□ -1.11
SMC1A-202ENST00000375340 C22orf23Q9BZE7 217 aa8.14□□□□□ -1.11
SMC1A-202ENST00000375340 ROCK1Q13464 1354 aa8.14□□□□□ -1.11
SMC1A-202ENST00000375340 KIF21AQ7Z4S6 1674 aa8.14□□□□□ -1.11
SMC1A-202ENST00000375340 TSR2Q969E8 191 aaKnown RBP8.14□□□□□ -1.11
SMC1A-202ENST00000375340 LNPKQ9C0E8 428 aa8.14□□□□□ -1.11
SMC1A-202ENST00000375340 CHAF1AQ13111 956 aaPredicted RBP8.14□□□□□ -1.11
SMC1A-202ENST00000375340 PLB1Q6P1J6 1458 aa8.14□□□□□ -1.11
SMC1A-202ENST00000375340 RILPL2Q969X0 211 aa8.14□□□□□ -1.11
SMC1A-202ENST00000375340 KIAA1211Q6ZU35 1233 aa8.14□□□□□ -1.11
SMC1A-202ENST00000375340 PDZRN3Q9UPQ7 1066 aa8.14□□□□□ -1.11
SMC1A-202ENST00000375340 LTV1Q96GA3 475 aaPredicted RBP8.13□□□□□ -1.11
SMC1A-202ENST00000375340 IFT140Q96RY7 1462 aa8.13□□□□□ -1.11
SMC1A-202ENST00000375340 DISP3Q9P2K9 1392 aa8.13□□□□□ -1.11
SMC1A-202ENST00000375340 RPRD2Q5VT52 1461 aaKnown RBP8.13□□□□□ -1.11
SMC1A-202ENST00000375340 HSP90AA2PQ14568 343 aaPredicted RBP8.13□□□□□ -1.11
SMC1A-202ENST00000375340 DDX49Q9Y6V7 483 aaKnown RBP8.13□□□□□ -1.11
SMC1A-202ENST00000375340 MCTP1Q6DN14 999 aa8.12□□□□□ -1.11
SMC1A-202ENST00000375340 DDX19BQ9UMR2 479 aa8.12□□□□□ -1.11
SMC1A-202ENST00000375340 GCC2Q8IWJ2 1684 aa8.12□□□□□ -1.11
SMC1A-202ENST00000375340 CFAP70Q5T0N1 1121 aa8.12□□□□□ -1.11
SMC1A-202ENST00000375340 GGNBP2Q9H3C7 697 aa8.12□□□□□ -1.11
SMC1A-202ENST00000375340 GOLGA6L6A8MZA4 724 aa8.12□□□□□ -1.11
SMC1A-202ENST00000375340 ST18O60284 1047 aa8.12□□□□□ -1.11
SMC1A-202ENST00000375340 FAM135AQ9P2D6 1515 aa8.12□□□□□ -1.11
SMC1A-202ENST00000375340 HSP90B1P14625 803 aaKnown RBP8.12□□□□□ -1.11
SMC1A-202ENST00000375340 NOB1Q9ULX3 412 aaKnown RBP8.12□□□□□ -1.11
SMC1A-202ENST00000375340 CCDC9Q9Y3X0 531 aaKnown RBP8.11□□□□□ -1.11
SMC1A-202ENST00000375340 DIAPH1O60610 1272 aaKnown RBP8.11□□□□□ -1.11
SMC1A-202ENST00000375340 STK31Q9BXU1 1019 aa8.11□□□□□ -1.11
SMC1A-202ENST00000375340 MTHFSP49914 203 aa8.1□□□□□ -1.11
SMC1A-202ENST00000375340 HAP1P54257 671 aaPredicted RBP8.1□□□□□ -1.11
SMC1A-202ENST00000375340 TCP11L2Q8N4U5 519 aa8.1□□□□□ -1.11
SMC1A-202ENST00000375340 CFAP44Q96MT7 982 aa8.1□□□□□ -1.11
SMC1A-202ENST00000375340 KIAA2012Q0VF49 1180 aa8.1□□□□□ -1.11
SMC1A-202ENST00000375340 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.1□□□□□ -1.11
SMC1A-202ENST00000375340 SYAP1Q96A49 352 aaPredicted RBP8.1□□□□□ -1.11
SMC1A-202ENST00000375340 CHMP5Q9NZZ3 219 aa8.1□□□□□ -1.11
SMC1A-202ENST00000375340 ADGBQ8N7X0 1667 aa8.1□□□□□ -1.11
SMC1A-202ENST00000375340 MAGI1Q96QZ7 1491 aaPredicted RBP8.1□□□□□ -1.11
SMC1A-202ENST00000375340 HMMRO75330 724 aa8.09□□□□□ -1.11
SMC1A-202ENST00000375340 KDM6BO15054 1643 aa8.09□□□□□ -1.11
SMC1A-202ENST00000375340 AFAP1Q8N556 730 aa8.09□□□□□ -1.11
SMC1A-202ENST00000375340 COG3Q96JB2 828 aa8.09□□□□□ -1.11
SMC1A-202ENST00000375340 EXOSC9Q06265 439 aaKnown RBP8.09□□□□□ -1.12
SMC1A-202ENST00000375340 LMOD3Q0VAK6 560 aa8.09□□□□□ -1.12
SMC1A-202ENST00000375340 VSIG10Q8N0Z9 540 aa8.08□□□□□ -1.12
SMC1A-202ENST00000375340 CCDC141Q6ZP82 1450 aa8.08□□□□□ -1.12
SMC1A-202ENST00000375340 SKOR2Q2VWA4 1001 aaPredicted RBP8.08□□□□□ -1.12
SMC1A-202ENST00000375340 WDR62O43379 1518 aa8.08□□□□□ -1.12
SMC1A-202ENST00000375340 BCL11BQ9C0K0 894 aaPredicted RBP8.08□□□□□ -1.12
SMC1A-202ENST00000375340 CHMP3Q9Y3E7 222 aa8.08□□□□□ -1.12
SMC1A-202ENST00000375340 NSD3Q9BZ95 1437 aa8.07□□□□□ -1.12
SMC1A-202ENST00000375340 TULP1O00294 542 aaPredicted RBP8.07□□□□□ -1.12
SMC1A-202ENST00000375340 TRAK2O60296 914 aa8.07□□□□□ -1.12
SMC1A-202ENST00000375340 AMPHP49418 695 aa8.07□□□□□ -1.12
SMC1A-202ENST00000375340 DNMT1P26358 1616 aaKnown RBP8.07□□□□□ -1.12
SMC1A-202ENST00000375340 SLFN5Q08AF3 891 aa8.07□□□□□ -1.12
SMC1A-202ENST00000375340 NKTRP30414 1462 aaKnown RBP8.07□□□□□ -1.12
SMC1A-202ENST00000375340 PLEKHH2Q8IVE3 1493 aa8.06□□□□□ -1.12
SMC1A-202ENST00000375340 GPATCH3Q96I76 525 aa8.06□□□□□ -1.12
SMC1A-202ENST00000375340 ZNF330Q9Y3S2 320 aaPredicted RBP8.06□□□□□ -1.12
SMC1A-202ENST00000375340 SLC12A5Q9H2X9 1139 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms