RNA–Protein interactions for RNA: ENST00000357732.8

RTN4-204, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,390 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-204ENST00000357732 ZCCHC11Q5TAX3 1644 aaKnown RBP23.27■■□□□ 1.32
RTN4-204ENST00000357732 ARAP3Q8WWN8 1544 aa23.27■■□□□ 1.32
RTN4-204ENST00000357732 KNSTRNQ9Y448 316 aa23.27■■□□□ 1.32
RTN4-204ENST00000357732 ASXL1Q8IXJ9 1541 aa23.26■■□□□ 1.31
RTN4-204ENST00000357732 PPM1GO15355 546 aaPredicted RBP23.26■■□□□ 1.31
RTN4-204ENST00000357732 SLC24A1O60721 1099 aa23.26■■□□□ 1.31
RTN4-204ENST00000357732 CRBNQ96SW2 442 aa23.26■■□□□ 1.31
RTN4-204ENST00000357732 PTPRTO14522 1441 aa23.26■■□□□ 1.31
RTN4-204ENST00000357732 ZNF521Q96K83 1311 aa23.25■■□□□ 1.31
RTN4-204ENST00000357732 DEPDC5O75140 1603 aa23.24■■□□□ 1.31
RTN4-204ENST00000357732 PPP2R1AP30153 589 aa23.24■■□□□ 1.31
RTN4-204ENST00000357732 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.24■■□□□ 1.31
RTN4-204ENST00000357732 ADAMTS8Q9UP79 889 aa23.24■■□□□ 1.31
RTN4-204ENST00000357732 KDM2BQ8NHM5 1336 aa23.24■■□□□ 1.31
RTN4-204ENST00000357732 WDR43Q15061 677 aaKnown RBP eCLIP23.23■■□□□ 1.31
RTN4-204ENST00000357732 EIF3AQ14152 1382 aaKnown RBP23.23■■□□□ 1.31
RTN4-204ENST00000357732 UHRF1BP1LA0JNW5 1464 aa23.23■■□□□ 1.31
RTN4-204ENST00000357732 CENPQQ7L2Z9 268 aaPredicted RBP23.23■■□□□ 1.31
RTN4-204ENST00000357732 AMER1Q5JTC6 1135 aaPredicted RBP23.22■■□□□ 1.31
RTN4-204ENST00000357732 DUSP27Q5VZP5 1158 aa23.21■■□□□ 1.31
RTN4-204ENST00000357732 NPM2Q86SE8 214 aaKnown RBP23.21■■□□□ 1.31
RTN4-204ENST00000357732 TET3O43151 1660 aa23.2■■□□□ 1.3
RTN4-204ENST00000357732 MYOM1P52179 1685 aa23.2■■□□□ 1.3
RTN4-204ENST00000357732 PLIN1O60240 522 aa23.2■■□□□ 1.3
RTN4-204ENST00000357732 NGEFQ8N5V2 710 aa23.2■■□□□ 1.3
RTN4-204ENST00000357732 GOLGA2Q08379 1002 aa23.19■■□□□ 1.3
RTN4-204ENST00000357732 SPAG9O60271 1321 aaKnown RBP23.18■■□□□ 1.3
RTN4-204ENST00000357732 PLEKHH1Q9ULM0 1364 aa23.18■■□□□ 1.3
RTN4-204ENST00000357732 AFAP1Q8N556 730 aa23.18■■□□□ 1.3
RTN4-204ENST00000357732 KDM5AP29375 1690 aaKnown RBP23.18■■□□□ 1.3
RTN4-204ENST00000357732 ZFYVE16Q7Z3T8 1539 aa23.17■■□□□ 1.3
RTN4-204ENST00000357732 CLTCL1P53675 1640 aa23.17■■□□□ 1.3
RTN4-204ENST00000357732 VWDEQ8N2E2 1590 aa23.15■■□□□ 1.3
RTN4-204ENST00000357732 TRMT2AQ8IZ69 625 aaKnown RBP23.13■■□□□ 1.29
RTN4-204ENST00000357732 SLFN5Q08AF3 891 aa23.12■■□□□ 1.29
RTN4-204ENST00000357732 MYOM2P54296 1465 aa23.12■■□□□ 1.29
RTN4-204ENST00000357732 NEFMP07197 916 aa23.11■■□□□ 1.29
RTN4-204ENST00000357732 NKTRP30414 1462 aaKnown RBP23.1■■□□□ 1.29
RTN4-204ENST00000357732 KANK1Q14678 1352 aa23.09■■□□□ 1.29
RTN4-204ENST00000357732 C20orf194Q5TEA3 1177 aa23.09■■□□□ 1.29
RTN4-204ENST00000357732 FAM161AQ3B820 660 aa23.08■■□□□ 1.29
RTN4-204ENST00000357732 NINLQ9Y2I6 1382 aa23.07■■□□□ 1.28
RTN4-204ENST00000357732 INO80Q9ULG1 1556 aaPredicted RBP23.07■■□□□ 1.28
RTN4-204ENST00000357732 MAP3K4Q9Y6R4 1608 aa23.07■■□□□ 1.28
RTN4-204ENST00000357732 MYO3AQ8NEV4 1616 aa23.06■■□□□ 1.28
RTN4-204ENST00000357732 SBNO2Q9Y2G9 1366 aa23.05■■□□□ 1.28
RTN4-204ENST00000357732 E9PSI1 815 aa23.04■■□□□ 1.28
RTN4-204ENST00000357732 LAS1LQ9Y4W2 734 aaKnown RBP23.04■■□□□ 1.28
RTN4-204ENST00000357732 ATP7AQ04656 1500 aa23.03■■□□□ 1.28
RTN4-204ENST00000357732 ERVK-7P63135 1459 aa23.01■■□□□ 1.27
RTN4-204ENST00000357732 IFT172Q9UG01 1749 aa23.01■■□□□ 1.27
RTN4-204ENST00000357732 ABCA9Q8IUA7 1624 aa23.01■■□□□ 1.27
RTN4-204ENST00000357732 FANCAO15360 1455 aa23■■□□□ 1.27
RTN4-204ENST00000357732 ABCA6Q8N139 1617 aa23■■□□□ 1.27
RTN4-204ENST00000357732 KIF3BO15066 747 aa23■■□□□ 1.27
RTN4-204ENST00000357732 C8orf34Q49A92 452 aa23■■□□□ 1.27
RTN4-204ENST00000357732 KIF1BO60333 1816 aa22.99■■□□□ 1.27
RTN4-204ENST00000357732 DAXXQ9UER7 740 aaPredicted RBP22.99■■□□□ 1.27
RTN4-204ENST00000357732 NRXN1Q9ULB1 1477 aa22.98■■□□□ 1.27
RTN4-204ENST00000357732 POLR3AO14802 1390 aaPredicted RBP22.98■■□□□ 1.27
RTN4-204ENST00000357732 VIRMAQ69YN4 1812 aaKnown RBP22.98■■□□□ 1.27
RTN4-204ENST00000357732 PDE3AQ14432 1141 aa22.97■■□□□ 1.27
RTN4-204ENST00000357732 SETBP1Q9Y6X0 1596 aa22.97■■□□□ 1.27
RTN4-204ENST00000357732 CGNL1Q0VF96 1302 aa22.97■■□□□ 1.27
RTN4-204ENST00000357732 AAMPQ13685 434 aa22.96■■□□□ 1.27
RTN4-204ENST00000357732 MROH1Q8NDA8 1641 aa22.96■■□□□ 1.27
RTN4-204ENST00000357732 EFCAB6Q5THR3 1501 aa22.94■■□□□ 1.26
RTN4-204ENST00000357732 UGGT1Q9NYU2 1555 aa22.94■■□□□ 1.26
RTN4-204ENST00000357732 APAF1O14727 1248 aa22.94■■□□□ 1.26
RTN4-204ENST00000357732 LMTK2Q8IWU2 1503 aa22.94■■□□□ 1.26
RTN4-204ENST00000357732 ADGRL1O94910 1474 aa22.93■■□□□ 1.26
RTN4-204ENST00000357732 CFAP70Q5T0N1 1121 aa22.93■■□□□ 1.26
RTN4-204ENST00000357732 SKAP1Q86WV1 359 aa22.92■■□□□ 1.26
RTN4-204ENST00000357732 ZMYM3Q14202 1370 aa22.91■■□□□ 1.26
RTN4-204ENST00000357732 ADGRF5Q8IZF2 1346 aa22.91■■□□□ 1.26
RTN4-204ENST00000357732 USP32Q8NFA0 1604 aa22.9■■□□□ 1.26
RTN4-204ENST00000357732 NFKBIBQ15653 356 aa22.9■■□□□ 1.26
RTN4-204ENST00000357732 CCDC146Q8IYE0 955 aa22.9■■□□□ 1.26
RTN4-204ENST00000357732 MAPK8IP3Q9UPT6 1336 aa22.9■■□□□ 1.26
RTN4-204ENST00000357732 GSE1Q14687 1217 aa22.88■■□□□ 1.25
RTN4-204ENST00000357732 NCBP3Q53F19 620 aaKnown RBP22.88■■□□□ 1.25
RTN4-204ENST00000357732 SPINK5Q9NQ38 1064 aaPredicted RBP22.87■■□□□ 1.25
RTN4-204ENST00000357732 ADGRB3O60242 1522 aa22.86■■□□□ 1.25
RTN4-204ENST00000357732 SHPRHQ149N8 1683 aa22.86■■□□□ 1.25
RTN4-204ENST00000357732 CENPJQ9HC77 1338 aaPredicted RBP22.86■■□□□ 1.25
RTN4-204ENST00000357732 CARD14Q9BXL6 1004 aa22.86■■□□□ 1.25
RTN4-204ENST00000357732 ZC3H13Q5T200 1668 aaKnown RBP22.86■■□□□ 1.25
RTN4-204ENST00000357732 MROH2AA6NES4 1674 aa22.84■■□□□ 1.25
RTN4-204ENST00000357732 BCAR3O75815 825 aa22.84■■□□□ 1.25
RTN4-204ENST00000357732 PPRC1Q5VV67 1664 aaKnown RBP22.83■■□□□ 1.25
RTN4-204ENST00000357732 WWC1Q8IX03 1113 aa22.83■■□□□ 1.25
RTN4-204ENST00000357732 CLUAP1Q96AJ1 413 aa22.83■■□□□ 1.25
RTN4-204ENST00000357732 ASXL2Q76L83 1435 aa22.83■■□□□ 1.25
RTN4-204ENST00000357732 IQSEC2Q5JU85 1478 aa22.83■■□□□ 1.24
RTN4-204ENST00000357732 RGS3P49796 1198 aa22.82■■□□□ 1.24
RTN4-204ENST00000357732 PHF23Q9BUL5 403 aaPredicted RBP22.8■■□□□ 1.24
RTN4-204ENST00000357732 KIDINS220Q9ULH0 1771 aa22.8■■□□□ 1.24
RTN4-204ENST00000357732 RUNDC1Q96C34 613 aa22.79■■□□□ 1.24
RTN4-204ENST00000357732 PUS7Q96PZ0 661 aaKnown RBP22.79■■□□□ 1.24
RTN4-204ENST00000357732 WDR63Q8IWG1 891 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms