RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 MEX3CQ5U5Q3 659 aaKnown RBP12.58□□□□□ -0.39
UPF2-202ENST00000357604 TOM1O60784 492 aa12.58□□□□□ -0.4
UPF2-202ENST00000357604 MSH6P52701 1360 aa12.58□□□□□ -0.4
UPF2-202ENST00000357604 NPHP4O75161 1426 aaPredicted RBP12.58□□□□□ -0.4
UPF2-202ENST00000357604 LMOD2Q6P5Q4 547 aa12.57□□□□□ -0.4
UPF2-202ENST00000357604 L3MBTL2Q969R5 705 aa12.57□□□□□ -0.4
UPF2-202ENST00000357604 MROH2AA6NES4 1674 aa12.57□□□□□ -0.4
UPF2-202ENST00000357604 TMEM2Q9UHN6 1383 aa12.57□□□□□ -0.4
UPF2-202ENST00000357604 LRPPRCP42704 1394 aaKnown RBP12.56□□□□□ -0.4
UPF2-202ENST00000357604 TERF2IPQ9NYB0 399 aa12.56□□□□□ -0.4
UPF2-202ENST00000357604 NGDNQ8NEJ9 315 aaKnown RBP12.56□□□□□ -0.4
UPF2-202ENST00000357604 TRPM2O94759 1503 aa12.56□□□□□ -0.4
UPF2-202ENST00000357604 HSPA2P54652 639 aa12.56□□□□□ -0.4
UPF2-202ENST00000357604 SCAF11Q99590 1463 aaKnown RBP12.55□□□□□ -0.4
UPF2-202ENST00000357604 SAFB2Q14151 953 aaKnown RBP eCLIP12.55□□□□□ -0.4
UPF2-202ENST00000357604 TRAK1Q9UPV9 953 aa12.55□□□□□ -0.4
UPF2-202ENST00000357604 NOS1P29475 1434 aa12.54□□□□□ -0.4
UPF2-202ENST00000357604 PLEKHG1Q9ULL1 1385 aa12.54□□□□□ -0.4
UPF2-202ENST00000357604 ADGRB3O60242 1522 aa12.53□□□□□ -0.4
UPF2-202ENST00000357604 GPRASP1Q5JY77 1395 aa12.53□□□□□ -0.4
UPF2-202ENST00000357604 CEP152O94986 1710 aa12.53□□□□□ -0.4
UPF2-202ENST00000357604 ZBTB7CA1YPR0 619 aa12.53□□□□□ -0.4
UPF2-202ENST00000357604 CENPJQ9HC77 1338 aaPredicted RBP12.53□□□□□ -0.4
UPF2-202ENST00000357604 SLC26A8Q96RN1 970 aa12.52□□□□□ -0.4
UPF2-202ENST00000357604 LMTK3Q96Q04 1460 aa12.52□□□□□ -0.41
UPF2-202ENST00000357604 TBX22Q9Y458 520 aa12.52□□□□□ -0.41
UPF2-202ENST00000357604 KNSTRNQ9Y448 316 aa12.51□□□□□ -0.41
UPF2-202ENST00000357604 PAK3O75914 559 aaPredicted RBP12.51□□□□□ -0.41
UPF2-202ENST00000357604 CEP170BQ9Y4F5 1589 aaPredicted RBP12.5□□□□□ -0.41
UPF2-202ENST00000357604 KCNA6P17658 529 aa12.5□□□□□ -0.41
UPF2-202ENST00000357604 CADPS2Q86UW7 1296 aa12.5□□□□□ -0.41
UPF2-202ENST00000357604 AMOTL2Q9Y2J4 779 aa12.5□□□□□ -0.41
UPF2-202ENST00000357604 KIF1BO60333 1816 aa12.5□□□□□ -0.41
UPF2-202ENST00000357604 ANP32CO43423 234 aa12.5□□□□□ -0.41
UPF2-202ENST00000357604 KDM4FA0A1W2PPD8 638 aa12.49□□□□□ -0.41
UPF2-202ENST00000357604 PIK3R4Q99570 1358 aa12.48□□□□□ -0.41
UPF2-202ENST00000357604 PIP4K2BP78356 416 aa12.48□□□□□ -0.41
UPF2-202ENST00000357604 PTPRTO14522 1441 aa12.48□□□□□ -0.41
UPF2-202ENST00000357604 MINK1Q8N4C8 1332 aaPredicted RBP12.48□□□□□ -0.41
UPF2-202ENST00000357604 PREX1Q8TCU6 1659 aa12.48□□□□□ -0.41
UPF2-202ENST00000357604 CFAP53Q96M91 514 aa12.48□□□□□ -0.41
UPF2-202ENST00000357604 SPHKAPQ2M3C7 1700 aa12.47□□□□□ -0.41
UPF2-202ENST00000357604 UBAP1LF5GYI3 381 aa12.47□□□□□ -0.41
UPF2-202ENST00000357604 DEPDC5O75140 1603 aa12.47□□□□□ -0.41
UPF2-202ENST00000357604 C14orf93Q9H972 538 aaKnown RBP12.46□□□□□ -0.41
UPF2-202ENST00000357604 SPATA31D1Q6ZQQ2 1576 aa12.46□□□□□ -0.41
UPF2-202ENST00000357604 PHF23Q9BUL5 403 aaPredicted RBP12.46□□□□□ -0.41
UPF2-202ENST00000357604 PLA2R1Q13018 1463 aa12.46□□□□□ -0.42
UPF2-202ENST00000357604 ZNF316A6NFI3 1004 aaPredicted RBP12.45□□□□□ -0.42
UPF2-202ENST00000357604 ESCO1Q5FWF5 840 aa12.45□□□□□ -0.42
UPF2-202ENST00000357604 CFAP70Q5T0N1 1121 aa12.45□□□□□ -0.42
UPF2-202ENST00000357604 PRAM1Q96QH2 718 aa12.45□□□□□ -0.42
UPF2-202ENST00000357604 CNGB1Q14028 1251 aaPredicted RBP12.43□□□□□ -0.42
UPF2-202ENST00000357604 TMEM132EQ6IEE7 984 aa12.43□□□□□ -0.42
UPF2-202ENST00000357604 DIP2AQ14689 1571 aa12.43□□□□□ -0.42
UPF2-202ENST00000357604 ADAMTSL3P82987 1691 aa12.42□□□□□ -0.42
UPF2-202ENST00000357604 ATAD2Q6PL18 1390 aa12.42□□□□□ -0.42
UPF2-202ENST00000357604 USP47Q96K76 1375 aa12.42□□□□□ -0.42
UPF2-202ENST00000357604 MYO3AQ8NEV4 1616 aa12.42□□□□□ -0.42
UPF2-202ENST00000357604 C19orf44Q9H6X5 657 aa12.41□□□□□ -0.42
UPF2-202ENST00000357604 MYOM2P54296 1465 aa12.41□□□□□ -0.42
UPF2-202ENST00000357604 A0A0G2JS52 829 aa12.41□□□□□ -0.42
UPF2-202ENST00000357604 MYT1Q01538 1121 aa12.41□□□□□ -0.42
UPF2-202ENST00000357604 PLEKHG5O94827 1062 aa12.41□□□□□ -0.42
UPF2-202ENST00000357604 ZNF692Q9BU19 519 aaPredicted RBP12.41□□□□□ -0.42
UPF2-202ENST00000357604 PNNQ9H307 717 aaKnown RBP12.41□□□□□ -0.42
UPF2-202ENST00000357604 HSPA5P11021 654 aaKnown RBP12.41□□□□□ -0.42
UPF2-202ENST00000357604 ADGRF5Q8IZF2 1346 aa12.4□□□□□ -0.42
UPF2-202ENST00000357604 E9PCH4 1651 aa12.4□□□□□ -0.42
UPF2-202ENST00000357604 SIRT1Q96EB6 747 aa12.4□□□□□ -0.42
UPF2-202ENST00000357604 CCDC9Q9Y3X0 531 aaKnown RBP12.4□□□□□ -0.42
UPF2-202ENST00000357604 C3P01024 1663 aa12.4□□□□□ -0.42
UPF2-202ENST00000357604 VWDEQ8N2E2 1590 aa12.4□□□□□ -0.43
UPF2-202ENST00000357604 SYNMO15061 1565 aa12.39□□□□□ -0.43
UPF2-202ENST00000357604 ZFYVE9O95405 1425 aa12.39□□□□□ -0.43
UPF2-202ENST00000357604 NUDCQ9Y266 331 aa12.39□□□□□ -0.43
UPF2-202ENST00000357604 CSB-PGBD3P0DP91 1061 aa12.39□□□□□ -0.43
UPF2-202ENST00000357604 CGNL1Q0VF96 1302 aa12.39□□□□□ -0.43
UPF2-202ENST00000357604 NINLQ9Y2I6 1382 aa12.38□□□□□ -0.43
UPF2-202ENST00000357604 CDK19Q9BWU1 502 aa12.38□□□□□ -0.43
UPF2-202ENST00000357604 PIK3C2BO00750 1634 aa12.38□□□□□ -0.43
UPF2-202ENST00000357604 COG3Q96JB2 828 aa12.37□□□□□ -0.43
UPF2-202ENST00000357604 NUTM2FA1L443 756 aa12.37□□□□□ -0.43
UPF2-202ENST00000357604 EVA1CP58658 441 aa12.37□□□□□ -0.43
UPF2-202ENST00000357604 MORC1Q86VD1 984 aa12.37□□□□□ -0.43
UPF2-202ENST00000357604 YTHDC2Q9H6S0 1430 aaKnown RBP12.36□□□□□ -0.43
UPF2-202ENST00000357604 CPS1P31327 1500 aa12.36□□□□□ -0.43
UPF2-202ENST00000357604 HIRIP3Q9BW71 556 aaPredicted RBP12.36□□□□□ -0.43
UPF2-202ENST00000357604 CLTCL1P53675 1640 aa12.36□□□□□ -0.43
UPF2-202ENST00000357604 WDR43Q15061 677 aaKnown RBP eCLIP12.36□□□□□ -0.43
UPF2-202ENST00000357604 LAMC1P11047 1609 aa12.35□□□□□ -0.43
UPF2-202ENST00000357604 CERKQ8TCT0 537 aa12.35□□□□□ -0.43
UPF2-202ENST00000357604 NPHP3Q7Z494 1330 aa12.34□□□□□ -0.43
UPF2-202ENST00000357604 LTKP29376 864 aa12.34□□□□□ -0.43
UPF2-202ENST00000357604 WASLO00401 505 aaPredicted RBP12.34□□□□□ -0.43
UPF2-202ENST00000357604 PRAG1Q86YV5 1406 aa12.34□□□□□ -0.43
UPF2-202ENST00000357604 PHF8Q9UPP1 1060 aa12.33□□□□□ -0.44
UPF2-202ENST00000357604 RALGAPBQ86X10 1494 aa12.33□□□□□ -0.44
UPF2-202ENST00000357604 ST20-MTHFSA0A0A6YYL1 179 aa12.33□□□□□ -0.44
UPF2-202ENST00000357604 NLRP13Q86W25 1043 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms