RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 ZNF521Q96K83 1311 aa13.12□□□□□ -0.31
PTPRA-203ENST00000356147 PLEKHH2Q8IVE3 1493 aa13.11□□□□□ -0.31
PTPRA-203ENST00000356147 GPRASP1Q5JY77 1395 aa13.11□□□□□ -0.31
PTPRA-203ENST00000356147 SHANK2Q9UPX8 1470 aa13.1□□□□□ -0.31
PTPRA-203ENST00000356147 USP19O94966 1318 aa13.1□□□□□ -0.31
PTPRA-203ENST00000356147 EIF4G3O43432 1585 aaKnown RBP13.09□□□□□ -0.31
PTPRA-203ENST00000356147 ADCY10Q96PN6 1610 aa13.09□□□□□ -0.31
PTPRA-203ENST00000356147 CLUAP1Q96AJ1 413 aa13.09□□□□□ -0.31
PTPRA-203ENST00000356147 CCDC141Q6ZP82 1450 aa13.08□□□□□ -0.32
PTPRA-203ENST00000356147 WDR7Q9Y4E6 1490 aa13.08□□□□□ -0.32
PTPRA-203ENST00000356147 PRDM15P57071 1507 aaPredicted RBP13.07□□□□□ -0.32
PTPRA-203ENST00000356147 GZF1Q9H116 711 aaPredicted RBP13.06□□□□□ -0.32
PTPRA-203ENST00000356147 SYCP2Q9BX26 1530 aa13.06□□□□□ -0.32
PTPRA-203ENST00000356147 SAMD9LQ8IVG5 1584 aa13.05□□□□□ -0.32
PTPRA-203ENST00000356147 ABCA8O94911 1581 aa13.04□□□□□ -0.32
PTPRA-203ENST00000356147 CENPJQ9HC77 1338 aaPredicted RBP13.04□□□□□ -0.32
PTPRA-203ENST00000356147 TRMT2AQ8IZ69 625 aaKnown RBP13.04□□□□□ -0.32
PTPRA-203ENST00000356147 E9PSI1 815 aa13.03□□□□□ -0.32
PTPRA-203ENST00000356147 NKTRP30414 1462 aaKnown RBP13.03□□□□□ -0.32
PTPRA-203ENST00000356147 RLBP1P12271 317 aa13.03□□□□□ -0.32
PTPRA-203ENST00000356147 SENP3Q9H4L4 574 aaPredicted RBP13.03□□□□□ -0.32
PTPRA-203ENST00000356147 PCDHB15Q9Y5E8 787 aa13.03□□□□□ -0.32
PTPRA-203ENST00000356147 SYNJ2O15056 1496 aa13.02□□□□□ -0.32
PTPRA-203ENST00000356147 CARD14Q9BXL6 1004 aa13.02□□□□□ -0.32
PTPRA-203ENST00000356147 CFAP70Q5T0N1 1121 aa13.02□□□□□ -0.33
PTPRA-203ENST00000356147 RRAGDQ9NQL2 400 aaPredicted RBP13.02□□□□□ -0.33
PTPRA-203ENST00000356147 ARHGAP5Q13017 1502 aa13.02□□□□□ -0.33
PTPRA-203ENST00000356147 WWC1Q8IX03 1113 aa13.01□□□□□ -0.33
PTPRA-203ENST00000356147 INSRP06213 1382 aa13.01□□□□□ -0.33
PTPRA-203ENST00000356147 EIF3AQ14152 1382 aaKnown RBP13.01□□□□□ -0.33
PTPRA-203ENST00000356147 MYO5CQ9NQX4 1742 aa13.01□□□□□ -0.33
PTPRA-203ENST00000356147 BECN1Q14457 450 aa13□□□□□ -0.33
PTPRA-203ENST00000356147 PDZRN3Q9UPQ7 1066 aa12.99□□□□□ -0.33
PTPRA-203ENST00000356147 TBC1D2Q9BYX2 928 aa12.99□□□□□ -0.33
PTPRA-203ENST00000356147 CDC42BPBQ9Y5S2 1711 aa12.99□□□□□ -0.33
PTPRA-203ENST00000356147 CGNL1Q0VF96 1302 aa12.99□□□□□ -0.33
PTPRA-203ENST00000356147 RSPH4AQ5TD94 716 aa12.99□□□□□ -0.33
PTPRA-203ENST00000356147 ERCC6Q03468 1493 aa12.99□□□□□ -0.33
PTPRA-203ENST00000356147 ARHGEF5Q12774 1597 aa12.98□□□□□ -0.33
PTPRA-203ENST00000356147 ASXL1Q8IXJ9 1541 aa12.98□□□□□ -0.33
PTPRA-203ENST00000356147 CDCA8Q53HL2 280 aa12.98□□□□□ -0.33
PTPRA-203ENST00000356147 PANK2Q9BZ23 570 aa12.98□□□□□ -0.33
PTPRA-203ENST00000356147 FAM43AQ8N2R8 423 aa12.98□□□□□ -0.33
PTPRA-203ENST00000356147 AFAP1Q8N556 730 aa12.97□□□□□ -0.33
PTPRA-203ENST00000356147 PDE3AQ14432 1141 aa12.96□□□□□ -0.33
PTPRA-203ENST00000356147 MAPK8IP3Q9UPT6 1336 aa12.96□□□□□ -0.33
PTPRA-203ENST00000356147 NUP160Q12769 1436 aa12.96□□□□□ -0.33
PTPRA-203ENST00000356147 RARSP54136 660 aaKnown RBP12.96□□□□□ -0.34
PTPRA-203ENST00000356147 MFAP1P55081 439 aaKnown RBP12.96□□□□□ -0.34
PTPRA-203ENST00000356147 TCP11L2Q8N4U5 519 aa12.96□□□□□ -0.34
PTPRA-203ENST00000356147 UPF2Q9HAU5 1272 aaKnown RBP12.96□□□□□ -0.34
PTPRA-203ENST00000356147 CHGAP10645 457 aaKnown RBP12.95□□□□□ -0.34
PTPRA-203ENST00000356147 ANTXR1Q9H6X2 564 aa12.95□□□□□ -0.34
PTPRA-203ENST00000356147 PIK3C2GO75747 1445 aa12.95□□□□□ -0.34
PTPRA-203ENST00000356147 MORC1Q86VD1 984 aa12.94□□□□□ -0.34
PTPRA-203ENST00000356147 SLC12A5Q9H2X9 1139 aa12.94□□□□□ -0.34
PTPRA-203ENST00000356147 TTC37Q6PGP7 1564 aa12.94□□□□□ -0.34
PTPRA-203ENST00000356147 EIF2AK4Q9P2K8 1649 aaKnown RBP12.94□□□□□ -0.34
PTPRA-203ENST00000356147 ADGRF5Q8IZF2 1346 aa12.94□□□□□ -0.34
PTPRA-203ENST00000356147 TBC1D32Q96NH3 1257 aa12.93□□□□□ -0.34
PTPRA-203ENST00000356147 SCAF11Q99590 1463 aaKnown RBP12.93□□□□□ -0.34
PTPRA-203ENST00000356147 XRCC6P12956 609 aaKnown RBP eCLIP12.93□□□□□ -0.34
PTPRA-203ENST00000356147 TRAK1Q9UPV9 953 aa12.93□□□□□ -0.34
PTPRA-203ENST00000356147 NLRP1Q9C000 1473 aa12.92□□□□□ -0.34
PTPRA-203ENST00000356147 TSR2Q969E8 191 aaKnown RBP12.92□□□□□ -0.34
PTPRA-203ENST00000356147 UNC13BO14795 1591 aa12.92□□□□□ -0.34
PTPRA-203ENST00000356147 PREX2Q70Z35 1606 aa12.92□□□□□ -0.34
PTPRA-203ENST00000356147 LAMC1P11047 1609 aa12.91□□□□□ -0.34
PTPRA-203ENST00000356147 UBE2Q2Q8WVN8 375 aa12.91□□□□□ -0.34
PTPRA-203ENST00000356147 RSPH6AQ9H0K4 717 aa12.91□□□□□ -0.34
PTPRA-203ENST00000356147 PMFBP1Q8TBY8 1022 aa12.91□□□□□ -0.34
PTPRA-203ENST00000356147 TRAPPC8Q9Y2L5 1435 aa12.9□□□□□ -0.34
PTPRA-203ENST00000356147 MTHFSP49914 203 aa12.9□□□□□ -0.34
PTPRA-203ENST00000356147 IQGAP3Q86VI3 1631 aa12.9□□□□□ -0.34
PTPRA-203ENST00000356147 NAP1L5Q96NT1 182 aaPredicted RBP12.9□□□□□ -0.34
PTPRA-203ENST00000356147 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.9□□□□□ -0.34
PTPRA-203ENST00000356147 KIF3BO15066 747 aa12.9□□□□□ -0.34
PTPRA-203ENST00000356147 TMEM132EQ6IEE7 984 aa12.9□□□□□ -0.34
PTPRA-203ENST00000356147 GOLGA6L3A6NEY3 463 aa12.89□□□□□ -0.35
PTPRA-203ENST00000356147 NUTM2DQ5VT03 806 aaPredicted RBP12.89□□□□□ -0.35
PTPRA-203ENST00000356147 MADDQ8WXG6 1647 aa12.89□□□□□ -0.35
PTPRA-203ENST00000356147 SPAG9O60271 1321 aaKnown RBP12.89□□□□□ -0.35
PTPRA-203ENST00000356147 MCM4P33991 863 aa12.89□□□□□ -0.35
PTPRA-203ENST00000356147 FTSJ3Q8IY81 847 aaKnown RBP12.89□□□□□ -0.35
PTPRA-203ENST00000356147 FOXD4L1Q9NU39 408 aa12.89□□□□□ -0.35
PTPRA-203ENST00000356147 RNF17Q9BXT8 1623 aaKnown RBP12.89□□□□□ -0.35
PTPRA-203ENST00000356147 RUNDC1Q96C34 613 aa12.88□□□□□ -0.35
PTPRA-203ENST00000356147 SYNMO15061 1565 aa12.88□□□□□ -0.35
PTPRA-203ENST00000356147 U2AF1L5P0DN76 240 aaPredicted RBP12.88□□□□□ -0.35
PTPRA-203ENST00000356147 U2AF1Q01081 240 aaKnown RBP eCLIP12.88□□□□□ -0.357e-6■■■■□ 20
PTPRA-203ENST00000356147 L1TD1Q5T7N2 865 aaKnown RBP12.88□□□□□ -0.35
PTPRA-203ENST00000356147 MAST1Q9Y2H9 1570 aa12.88□□□□□ -0.35
PTPRA-203ENST00000356147 ABCC2Q92887 1545 aa12.88□□□□□ -0.35
PTPRA-203ENST00000356147 SAFB2Q14151 953 aaKnown RBP eCLIP12.88□□□□□ -0.35
PTPRA-203ENST00000356147 EFCAB2Q5VUJ9 269 aa12.88□□□□□ -0.35
PTPRA-203ENST00000356147 C22orf23Q9BZE7 217 aa12.88□□□□□ -0.35
PTPRA-203ENST00000356147 RWDD1Q9H446 243 aaPredicted RBP12.88□□□□□ -0.35
PTPRA-203ENST00000356147 CLASP1Q7Z460 1538 aa12.87□□□□□ -0.35
PTPRA-203ENST00000356147 UGGT1Q9NYU2 1555 aa12.87□□□□□ -0.35
PTPRA-203ENST00000356147 ATP10AO60312 1499 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms