RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 DPYSL4O14531 572 aa11.92□□□□□ -0.5
VPS13A-201ENST00000355766 ZBED2Q9BTP6 218 aa11.92□□□□□ -0.5
VPS13A-201ENST00000355766 EPRSP07814 1512 aaKnown RBP11.91□□□□□ -0.5
VPS13A-201ENST00000355766 SUPT5HO00267 1087 aaKnown RBP11.91□□□□□ -0.5
VPS13A-201ENST00000355766 CARMIL2Q6F5E8 1435 aa11.91□□□□□ -0.5
VPS13A-201ENST00000355766 KCTD12Q96CX2 325 aaKnown RBP11.9□□□□□ -0.5
VPS13A-201ENST00000355766 PAXIP1Q6ZW49 1069 aaPredicted RBP11.89□□□□□ -0.51
VPS13A-201ENST00000355766 IGF1RP08069 1367 aa11.89□□□□□ -0.51
VPS13A-201ENST00000355766 UACAQ9BZF9 1416 aa11.88□□□□□ -0.51
VPS13A-201ENST00000355766 BHMG1C9JSJ3 638 aaPredicted RBP11.88□□□□□ -0.51
VPS13A-201ENST00000355766 FBXO41Q8TF61 875 aa11.88□□□□□ -0.51
VPS13A-201ENST00000355766 CFAP44Q96MT7 982 aa11.88□□□□□ -0.51
VPS13A-201ENST00000355766 KDM5BQ9UGL1 1544 aa11.87□□□□□ -0.51
VPS13A-201ENST00000355766 PHF14O94880 888 aa11.87□□□□□ -0.51
VPS13A-201ENST00000355766 TTBK1Q5TCY1 1321 aaPredicted RBP11.86□□□□□ -0.51
VPS13A-201ENST00000355766 KIF27Q86VH2 1401 aa11.86□□□□□ -0.51
VPS13A-201ENST00000355766 TYW1BQ6NUM6 668 aa11.86□□□□□ -0.51
VPS13A-201ENST00000355766 IQGAP2Q13576 1575 aa11.86□□□□□ -0.51
VPS13A-201ENST00000355766 FBXW7Q969H0 707 aa11.85□□□□□ -0.51
VPS13A-201ENST00000355766 COL9A1P20849 921 aa11.84□□□□□ -0.51
VPS13A-201ENST00000355766 ZCCHC11Q5TAX3 1644 aaKnown RBP11.84□□□□□ -0.51
VPS13A-201ENST00000355766 DISP1Q96F81 1524 aa11.83□□□□□ -0.52
VPS13A-201ENST00000355766 PPP1R3GB7ZBB8 358 aa11.83□□□□□ -0.52
VPS13A-201ENST00000355766 WDR7Q9Y4E6 1490 aa11.82□□□□□ -0.52
VPS13A-201ENST00000355766 EPAS1Q99814 870 aa11.81□□□□□ -0.52
VPS13A-201ENST00000355766 PLA2G2EQ9NZK7 142 aa11.81□□□□□ -0.52
VPS13A-201ENST00000355766 CARMIL1Q5VZK9 1371 aa11.8□□□□□ -0.52
VPS13A-201ENST00000355766 PROX2Q3B8N5 592 aa11.8□□□□□ -0.52
VPS13A-201ENST00000355766 MRPL50Q8N5N7 158 aaKnown RBP11.8□□□□□ -0.52
VPS13A-201ENST00000355766 DDX12PQ92771 950 aa11.8□□□□□ -0.52
VPS13A-201ENST00000355766 MAGI3Q5TCQ9 1506 aa11.8□□□□□ -0.52
VPS13A-201ENST00000355766 PTPN5P54829 565 aa11.79□□□□□ -0.52
VPS13A-201ENST00000355766 KIF21BO75037 1637 aa11.78□□□□□ -0.52
VPS13A-201ENST00000355766 UGGT2Q9NYU1 1516 aa11.78□□□□□ -0.52
VPS13A-201ENST00000355766 C6orf132Q5T0Z8 1188 aa11.78□□□□□ -0.52
VPS13A-201ENST00000355766 KIAA0556O60303 1618 aa11.78□□□□□ -0.52
VPS13A-201ENST00000355766 GOLGA8CPA6NN73 597 aa11.77□□□□□ -0.53
VPS13A-201ENST00000355766 PDIA6Q15084 440 aa11.77□□□□□ -0.53
VPS13A-201ENST00000355766 E2F4Q16254 413 aa11.77□□□□□ -0.53
VPS13A-201ENST00000355766 RBM33Q96EV2 1170 aaKnown RBP11.77□□□□□ -0.53
VPS13A-201ENST00000355766 NBPF3Q9H094 633 aa11.77□□□□□ -0.53
VPS13A-201ENST00000355766 CFAP43Q8NDM7 1665 aa11.76□□□□□ -0.53
VPS13A-201ENST00000355766 THSD4Q6ZMP0 1018 aa11.76□□□□□ -0.53
VPS13A-201ENST00000355766 WNT2BQ93097 391 aa11.75□□□□□ -0.53
VPS13A-201ENST00000355766 RABGEF1Q9UJ41 708 aa11.75□□□□□ -0.53
VPS13A-201ENST00000355766 CD109Q6YHK3 1445 aa11.75□□□□□ -0.53
VPS13A-201ENST00000355766 WDR70Q9NW82 654 aa11.74□□□□□ -0.53
VPS13A-201ENST00000355766 SPDYE16A6NNV3 312 aaPredicted RBP11.73□□□□□ -0.53
VPS13A-201ENST00000355766 PTPRMP28827 1452 aa11.73□□□□□ -0.53
VPS13A-201ENST00000355766 KIAA1468Q9P260 1216 aa11.72□□□□□ -0.53
VPS13A-201ENST00000355766 PCF11O94913 1555 aaKnown RBP11.71□□□□□ -0.53
VPS13A-201ENST00000355766 NBR1Q14596 966 aa11.71□□□□□ -0.53
VPS13A-201ENST00000355766 ARIH1Q9Y4X5 557 aaPredicted RBP11.71□□□□□ -0.53
VPS13A-201ENST00000355766 ADAMTSL3P82987 1691 aa11.71□□□□□ -0.54
VPS13A-201ENST00000355766 ARAP3Q8WWN8 1544 aa11.7□□□□□ -0.54
VPS13A-201ENST00000355766 LMTK3Q96Q04 1460 aa11.7□□□□□ -0.54
VPS13A-201ENST00000355766 EN1Q05925 392 aaPredicted RBP11.7□□□□□ -0.54
VPS13A-201ENST00000355766 ABCA8O94911 1581 aa11.68□□□□□ -0.54
VPS13A-201ENST00000355766 ONECUT3O60422 494 aaPredicted RBP11.68□□□□□ -0.54
VPS13A-201ENST00000355766 TSR1Q2NL82 804 aaKnown RBP11.68□□□□□ -0.54
VPS13A-201ENST00000355766 RAPGEF2Q9Y4G8 1499 aa11.68□□□□□ -0.54
VPS13A-201ENST00000355766 MAP3K7O43318 606 aa11.67□□□□□ -0.54
VPS13A-201ENST00000355766 TRIM6-TRIM34B2RNG4 842 aa11.66□□□□□ -0.54
VPS13A-201ENST00000355766 LAPTM4BQ86VI4 370 aa11.66□□□□□ -0.54
VPS13A-201ENST00000355766 MADDQ8WXG6 1647 aa11.65□□□□□ -0.54
VPS13A-201ENST00000355766 PRIM1P49642 420 aaKnown RBP11.65□□□□□ -0.54
VPS13A-201ENST00000355766 ANKK1Q8NFD2 765 aa11.65□□□□□ -0.54
VPS13A-201ENST00000355766 BCORL1Q5H9F3 1711 aa11.64□□□□□ -0.55
VPS13A-201ENST00000355766 GRXCR2A6NFK2 248 aa11.64□□□□□ -0.55
VPS13A-201ENST00000355766 TSHZ2Q9NRE2 1034 aa11.64□□□□□ -0.55
VPS13A-201ENST00000355766 SEPT9Q9UHD8 586 aaPredicted RBP11.64□□□□□ -0.55
VPS13A-201ENST00000355766 GOLGA3Q08378 1498 aa11.63□□□□□ -0.55
VPS13A-201ENST00000355766 BCAMP50895 628 aa11.62□□□□□ -0.55
VPS13A-201ENST00000355766 ZFRQ96KR1 1074 aaKnown RBP11.62□□□□□ -0.55
VPS13A-201ENST00000355766 PHLDB1Q86UU1 1377 aa11.62□□□□□ -0.55
VPS13A-201ENST00000355766 FRMPD1Q5SYB0 1578 aa11.62□□□□□ -0.55
VPS13A-201ENST00000355766 ABCA9Q8IUA7 1624 aa11.61□□□□□ -0.55
VPS13A-201ENST00000355766 CTTNBP2Q8WZ74 1663 aa11.61□□□□□ -0.55
VPS13A-201ENST00000355766 SOWAHBA6NEL2 793 aa11.6□□□□□ -0.55
VPS13A-201ENST00000355766 TSKSQ9UJT2 592 aa11.6□□□□□ -0.55
VPS13A-201ENST00000355766 ARHGEF40Q8TER5 1519 aa11.6□□□□□ -0.55
VPS13A-201ENST00000355766 NEO1Q92859 1461 aa11.59□□□□□ -0.55
VPS13A-201ENST00000355766 OSBPP22059 807 aa11.59□□□□□ -0.55
VPS13A-201ENST00000355766 FAM98CQ17RN3 349 aaKnown RBP11.58□□□□□ -0.56
VPS13A-201ENST00000355766 RIMS1Q86UR5 1692 aaKnown RBP11.57□□□□□ -0.56
VPS13A-201ENST00000355766 PACS2Q86VP3 889 aa11.57□□□□□ -0.56
VPS13A-201ENST00000355766 CDCA7LQ96GN5 454 aa11.57□□□□□ -0.56
VPS13A-201ENST00000355766 SOCS7O14512 581 aa11.55□□□□□ -0.56
VPS13A-201ENST00000355766 RAPGEF3O95398 923 aa11.55□□□□□ -0.56
VPS13A-201ENST00000355766 PRSS12P56730 875 aa11.55□□□□□ -0.56
VPS13A-201ENST00000355766 IFFO2Q5TF58 517 aa11.55□□□□□ -0.56
VPS13A-201ENST00000355766 CERKQ8TCT0 537 aa11.55□□□□□ -0.56
VPS13A-201ENST00000355766 FAM198AQ9UFP1 575 aa11.55□□□□□ -0.56
VPS13A-201ENST00000355766 ATP10BO94823 1461 aa11.55□□□□□ -0.56
VPS13A-201ENST00000355766 ARID4BQ4LE39 1312 aaPredicted RBP11.55□□□□□ -0.56
VPS13A-201ENST00000355766 DISP3Q9P2K9 1392 aa11.54□□□□□ -0.56
VPS13A-201ENST00000355766 HSPA2P54652 639 aa11.54□□□□□ -0.56
VPS13A-201ENST00000355766 ILDR2Q71H61 639 aa11.54□□□□□ -0.56
VPS13A-201ENST00000355766 CDHR5Q9HBB8 845 aa11.54□□□□□ -0.56
VPS13A-201ENST00000355766 WBP1LQ9NX94 342 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms