RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 MYOM2P54296 1465 aa29.13■■■□□ 2.25
SHMT1-202ENST00000352886 KNSTRNQ9Y448 316 aa29.13■■■□□ 2.25
SHMT1-202ENST00000352886 ABCA6Q8N139 1617 aa29.12■■■□□ 2.25
SHMT1-202ENST00000352886 BLMP54132 1417 aaPredicted RBP29.12■■■□□ 2.25
SHMT1-202ENST00000352886 IFT172Q9UG01 1749 aa29.12■■■□□ 2.25
SHMT1-202ENST00000352886 ZMYM4Q5VZL5 1548 aa29.12■■■□□ 2.25
SHMT1-202ENST00000352886 MROH2AA6NES4 1674 aa29.12■■■□□ 2.25
SHMT1-202ENST00000352886 CFAP74Q9C0B2 1584 aa29.11■■■□□ 2.25
SHMT1-202ENST00000352886 PDE3BQ13370 1112 aa29.11■■■□□ 2.25
SHMT1-202ENST00000352886 INSRP06213 1382 aa29.11■■■□□ 2.25
SHMT1-202ENST00000352886 CD109Q6YHK3 1445 aa29.11■■■□□ 2.25
SHMT1-202ENST00000352886 LMTK2Q8IWU2 1503 aa29.11■■■□□ 2.25
SHMT1-202ENST00000352886 MYOM1P52179 1685 aa29.11■■■□□ 2.25
SHMT1-202ENST00000352886 ANP32EQ9BTT0 268 aa29.11■■■□□ 2.25
SHMT1-202ENST00000352886 ADGRF5Q8IZF2 1346 aa29.09■■■□□ 2.25
SHMT1-202ENST00000352886 CFAP70Q5T0N1 1121 aa29.09■■■□□ 2.25
SHMT1-202ENST00000352886 CCDC136Q96JN2 1154 aa29.08■■■□□ 2.25
SHMT1-202ENST00000352886 POGZQ7Z3K3 1410 aa29.08■■■□□ 2.25
SHMT1-202ENST00000352886 KDM5AP29375 1690 aaKnown RBP29.07■■■□□ 2.24
SHMT1-202ENST00000352886 AMER1Q5JTC6 1135 aaPredicted RBP29.06■■■□□ 2.24
SHMT1-202ENST00000352886 RCAN3Q9UKA8 241 aa29.06■■■□□ 2.24
SHMT1-202ENST00000352886 RRP1P56182 461 aaKnown RBP29.04■■■□□ 2.24
SHMT1-202ENST00000352886 CFAP65Q6ZU64 1925 aaKnown RBP29.04■■■□□ 2.24
SHMT1-202ENST00000352886 ASXL1Q8IXJ9 1541 aa29.04■■■□□ 2.24
SHMT1-202ENST00000352886 FRMPD1Q5SYB0 1578 aa29.04■■■□□ 2.24
SHMT1-202ENST00000352886 FANCIQ9NVI1 1328 aa29.04■■■□□ 2.24
SHMT1-202ENST00000352886 PPP2R1AP30153 589 aa29.03■■■□□ 2.24
SHMT1-202ENST00000352886 HECW2Q9P2P5 1572 aa29.03■■■□□ 2.24
SHMT1-202ENST00000352886 CDCA7LQ96GN5 454 aa29.03■■■□□ 2.24
SHMT1-202ENST00000352886 MLH3Q9UHC1 1453 aa29.03■■■□□ 2.24
SHMT1-202ENST00000352886 ADGRB3O60242 1522 aa29■■■□□ 2.23
SHMT1-202ENST00000352886 NRXN1Q9ULB1 1477 aa29■■■□□ 2.23
SHMT1-202ENST00000352886 NPATQ14207 1427 aa28.99■■■□□ 2.23
SHMT1-202ENST00000352886 GGT6Q6P531 493 aa28.99■■■□□ 2.23
SHMT1-202ENST00000352886 ADAMTS8Q9UP79 889 aa28.99■■■□□ 2.23
SHMT1-202ENST00000352886 ERVK-7P63135 1459 aa28.98■■■□□ 2.23
SHMT1-202ENST00000352886 NOS1P29475 1434 aa28.97■■■□□ 2.23
SHMT1-202ENST00000352886 CHGAP10645 457 aaKnown RBP28.96■■■□□ 2.23
SHMT1-202ENST00000352886 SLC24A1O60721 1099 aa28.96■■■□□ 2.23
SHMT1-202ENST00000352886 MSH5O43196 834 aa28.95■■■□□ 2.23
SHMT1-202ENST00000352886 NPC1L1Q9UHC9 1359 aa28.95■■■□□ 2.22
SHMT1-202ENST00000352886 WDR43Q15061 677 aaKnown RBP eCLIP28.93■■■□□ 2.22
SHMT1-202ENST00000352886 MYO3AQ8NEV4 1616 aa28.93■■■□□ 2.22
SHMT1-202ENST00000352886 PPLO60437 1756 aa28.93■■■□□ 2.22
SHMT1-202ENST00000352886 PIK3C2GO75747 1445 aa28.92■■■□□ 2.22
SHMT1-202ENST00000352886 EXOC6Q8TAG9 804 aa28.9■■■□□ 2.22
SHMT1-202ENST00000352886 SETBP1Q9Y6X0 1596 aa28.9■■■□□ 2.22
SHMT1-202ENST00000352886 BCL11AQ9H165 835 aa28.9■■■□□ 2.22
SHMT1-202ENST00000352886 ABCC3O15438 1527 aa28.89■■■□□ 2.22
SHMT1-202ENST00000352886 NEO1Q92859 1461 aa28.87■■■□□ 2.21
SHMT1-202ENST00000352886 SBNO2Q9Y2G9 1366 aa28.87■■■□□ 2.21
SHMT1-202ENST00000352886 RAPGEF3O95398 923 aa28.86■■■□□ 2.21
SHMT1-202ENST00000352886 CAMSAP1Q5T5Y3 1602 aa28.86■■■□□ 2.21
SHMT1-202ENST00000352886 CENPJQ9HC77 1338 aaPredicted RBP28.84■■■□□ 2.21
SHMT1-202ENST00000352886 CARD14Q9BXL6 1004 aa28.83■■■□□ 2.21
SHMT1-202ENST00000352886 PLEKHH1Q9ULM0 1364 aa28.83■■■□□ 2.21
SHMT1-202ENST00000352886 SIGLEC1Q9BZZ2 1709 aa28.82■■■□□ 2.2
SHMT1-202ENST00000352886 C14orf93Q9H972 538 aaKnown RBP28.82■■■□□ 2.2
SHMT1-202ENST00000352886 TRAK1Q9UPV9 953 aa28.81■■■□□ 2.2
SHMT1-202ENST00000352886 DIP2CQ9Y2E4 1556 aa28.8■■■□□ 2.2
SHMT1-202ENST00000352886 ZC3H13Q5T200 1668 aaKnown RBP28.8■■■□□ 2.2
SHMT1-202ENST00000352886 QRICH2Q9H0J4 1663 aa28.8■■■□□ 2.2
SHMT1-202ENST00000352886 ADGRB1O14514 1584 aa28.79■■■□□ 2.2
SHMT1-202ENST00000352886 PLIN1O60240 522 aa28.79■■■□□ 2.2
SHMT1-202ENST00000352886 RPGRIP1LQ68CZ1 1315 aa28.78■■■□□ 2.2
SHMT1-202ENST00000352886 TMEM132EQ6IEE7 984 aa28.76■■■□□ 2.19
SHMT1-202ENST00000352886 RICTORQ6R327 1708 aa28.76■■■□□ 2.19
SHMT1-202ENST00000352886 ZNF521Q96K83 1311 aa28.76■■■□□ 2.19
SHMT1-202ENST00000352886 PIK3C2BO00750 1634 aa28.75■■■□□ 2.19
SHMT1-202ENST00000352886 DUSP27Q5VZP5 1158 aa28.73■■■□□ 2.19
SHMT1-202ENST00000352886 CCDC146Q8IYE0 955 aa28.73■■■□□ 2.19
SHMT1-202ENST00000352886 GOLGA2Q08379 1002 aa28.72■■■□□ 2.19
SHMT1-202ENST00000352886 ERICH6Q7L0X2 663 aa28.69■■■□□ 2.18
SHMT1-202ENST00000352886 GLI2P10070 1586 aa28.69■■■□□ 2.18
SHMT1-202ENST00000352886 NEXMIFQ5QGS0 1516 aa28.69■■■□□ 2.18
SHMT1-202ENST00000352886 NUTM2DQ5VT03 806 aaPredicted RBP28.69■■■□□ 2.18
SHMT1-202ENST00000352886 CRBNQ96SW2 442 aa28.68■■■□□ 2.18
SHMT1-202ENST00000352886 NSD3Q9BZ95 1437 aa28.68■■■□□ 2.18
SHMT1-202ENST00000352886 SLC12A5Q9H2X9 1139 aa28.67■■■□□ 2.18
SHMT1-202ENST00000352886 ARHGAP31Q2M1Z3 1444 aa28.66■■■□□ 2.18
SHMT1-202ENST00000352886 VGFO15240 615 aaPredicted RBP28.65■■■□□ 2.18
SHMT1-202ENST00000352886 YEATS2Q9ULM3 1422 aa28.65■■■□□ 2.18
SHMT1-202ENST00000352886 APAF1O14727 1248 aa28.65■■■□□ 2.18
SHMT1-202ENST00000352886 ARHGEF28Q8N1W1 1705 aaKnown RBP28.64■■■□□ 2.18
SHMT1-202ENST00000352886 SLFN5Q08AF3 891 aa28.64■■■□□ 2.18
SHMT1-202ENST00000352886 C20orf194Q5TEA3 1177 aa28.62■■■□□ 2.17
SHMT1-202ENST00000352886 POLR3AO14802 1390 aaPredicted RBP28.61■■■□□ 2.17
SHMT1-202ENST00000352886 IDI1Q13907 227 aa28.61■■■□□ 2.17
SHMT1-202ENST00000352886 MORC1Q86VD1 984 aa28.6■■■□□ 2.17
SHMT1-202ENST00000352886 TCERG1O14776 1098 aaKnown RBP28.59■■■□□ 2.17
SHMT1-202ENST00000352886 MYO5BQ9ULV0 1848 aa28.58■■■□□ 2.17
SHMT1-202ENST00000352886 TRMT2AQ8IZ69 625 aaKnown RBP28.58■■■□□ 2.17
SHMT1-202ENST00000352886 USP32Q8NFA0 1604 aa28.57■■■□□ 2.16
SHMT1-202ENST00000352886 SPINK5Q9NQ38 1064 aaPredicted RBP28.57■■■□□ 2.16
SHMT1-202ENST00000352886 TNNT2P45379 298 aaPredicted RBP28.56■■■□□ 2.16
SHMT1-202ENST00000352886 TULP4Q9NRJ4 1543 aa28.56■■■□□ 2.16
SHMT1-202ENST00000352886 SHPRHQ149N8 1683 aa28.56■■■□□ 2.16
SHMT1-202ENST00000352886 PREX1Q8TCU6 1659 aa28.56■■■□□ 2.16
SHMT1-202ENST00000352886 EVC2Q86UK5 1308 aa28.55■■■□□ 2.16
SHMT1-202ENST00000352886 SLC52A1Q9NWF4 448 aa28.55■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms