RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 ILDR1Q86SU0 546 aaPredicted RBP27.34■■□□□ 1.97
CHMP4A-201ENST00000347519 NBPF8Q3BBV2 869 aa27.33■■□□□ 1.97
CHMP4A-201ENST00000347519 NUTM2DQ5VT03 806 aaPredicted RBP27.3■■□□□ 1.96
CHMP4A-201ENST00000347519 RPGRIP1LQ68CZ1 1315 aa27.29■■□□□ 1.96
CHMP4A-201ENST00000347519 ZFYVE9O95405 1425 aa27.28■■□□□ 1.96
CHMP4A-201ENST00000347519 UHRF1BP1Q6BDS2 1440 aa27.28■■□□□ 1.96
CHMP4A-201ENST00000347519 RIMS2Q9UQ26 1411 aa27.28■■□□□ 1.96
CHMP4A-201ENST00000347519 ADGRF5Q8IZF2 1346 aa27.28■■□□□ 1.96
CHMP4A-201ENST00000347519 MYOM2P54296 1465 aa27.28■■□□□ 1.96
CHMP4A-201ENST00000347519 PRAG1Q86YV5 1406 aa27.26■■□□□ 1.95
CHMP4A-201ENST00000347519 TMEM2Q9UHN6 1383 aa27.25■■□□□ 1.95
CHMP4A-201ENST00000347519 ARHGAP23Q9P227 1491 aa27.24■■□□□ 1.95
CHMP4A-201ENST00000347519 NRXN1Q9ULB1 1477 aa27.24■■□□□ 1.95
CHMP4A-201ENST00000347519 SLIT1O75093 1534 aa27.23■■□□□ 1.95
CHMP4A-201ENST00000347519 THEMISQ8N1K5 641 aaPredicted RBP27.22■■□□□ 1.95
CHMP4A-201ENST00000347519 LMTK3Q96Q04 1460 aa27.2■■□□□ 1.95
CHMP4A-201ENST00000347519 TRPM1Q7Z4N2 1603 aa27.2■■□□□ 1.94
CHMP4A-201ENST00000347519 LTKP29376 864 aa27.19■■□□□ 1.94
CHMP4A-201ENST00000347519 STAC3Q96MF2 364 aa27.19■■□□□ 1.94
CHMP4A-201ENST00000347519 SENP3Q9H4L4 574 aaPredicted RBP27.18■■□□□ 1.94
CHMP4A-201ENST00000347519 VGFO15240 615 aaPredicted RBP27.17■■□□□ 1.94
CHMP4A-201ENST00000347519 PIK3C2GO75747 1445 aa27.16■■□□□ 1.94
CHMP4A-201ENST00000347519 TXNDC2Q86VQ3 553 aa27.14■■□□□ 1.94
CHMP4A-201ENST00000347519 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.14■■□□□ 1.94
CHMP4A-201ENST00000347519 RALGAPBQ86X10 1494 aa27.14■■□□□ 1.94
CHMP4A-201ENST00000347519 NRXN3Q9Y4C0 1643 aa27.13■■□□□ 1.93
CHMP4A-201ENST00000347519 KIAA1210Q9ULL0 1709 aa27.12■■□□□ 1.93
CHMP4A-201ENST00000347519 NBPF1Q3BBV0 1214 aa27.11■■□□□ 1.93
CHMP4A-201ENST00000347519 CFAP70Q5T0N1 1121 aa27.11■■□□□ 1.93
CHMP4A-201ENST00000347519 IQGAP1P46940 1657 aa27.11■■□□□ 1.93
CHMP4A-201ENST00000347519 SCAF11Q99590 1463 aaKnown RBP27.1■■□□□ 1.93
CHMP4A-201ENST00000347519 HDGFP51858 240 aaKnown RBP27.09■■□□□ 1.93
CHMP4A-201ENST00000347519 HSPA2P54652 639 aa27.09■■□□□ 1.93
CHMP4A-201ENST00000347519 EID1Q9Y6B2 187 aa27.09■■□□□ 1.93
CHMP4A-201ENST00000347519 C14orf93Q9H972 538 aaKnown RBP27.08■■□□□ 1.93
CHMP4A-201ENST00000347519 SETD1AO15047 1707 aaKnown RBP27.07■■□□□ 1.92
CHMP4A-201ENST00000347519 SETBP1Q9Y6X0 1596 aa27.07■■□□□ 1.92
CHMP4A-201ENST00000347519 PLEKHG1Q9ULL1 1385 aa27.07■■□□□ 1.92
CHMP4A-201ENST00000347519 POLR1AO95602 1720 aaPredicted RBP27.07■■□□□ 1.92
CHMP4A-201ENST00000347519 ALKQ9UM73 1620 aa27.07■■□□□ 1.92
CHMP4A-201ENST00000347519 ASXL1Q8IXJ9 1541 aa27.04■■□□□ 1.92
CHMP4A-201ENST00000347519 ANKLE2Q86XL3 938 aa27.04■■□□□ 1.92
CHMP4A-201ENST00000347519 NCKAP5LQ9HCH0 1330 aa27.04■■□□□ 1.92
CHMP4A-201ENST00000347519 LAMC1P11047 1609 aa27.04■■□□□ 1.92
CHMP4A-201ENST00000347519 ROCK2O75116 1388 aaKnown RBP27.03■■□□□ 1.92
CHMP4A-201ENST00000347519 GPRASP1Q5JY77 1395 aa27.02■■□□□ 1.92
CHMP4A-201ENST00000347519 ADAMTS13Q76LX8 1427 aa27.02■■□□□ 1.92
CHMP4A-201ENST00000347519 ADGRB1O14514 1584 aa27.02■■□□□ 1.92
CHMP4A-201ENST00000347519 TMEM132EQ6IEE7 984 aa26.99■■□□□ 1.91
CHMP4A-201ENST00000347519 MED14O60244 1454 aa26.99■■□□□ 1.91
CHMP4A-201ENST00000347519 BCANQ96GW7 911 aa26.98■■□□□ 1.91
CHMP4A-201ENST00000347519 CARD11Q9BXL7 1154 aa26.98■■□□□ 1.91
CHMP4A-201ENST00000347519 STRCQ7RTU9 1775 aa26.98■■□□□ 1.91
CHMP4A-201ENST00000347519 SLC26A8Q96RN1 970 aa26.97■■□□□ 1.91
CHMP4A-201ENST00000347519 NPHP4O75161 1426 aaPredicted RBP26.96■■□□□ 1.91
CHMP4A-201ENST00000347519 METP08581 1390 aa26.95■■□□□ 1.9
CHMP4A-201ENST00000347519 DIP2AQ14689 1571 aa26.91■■□□□ 1.9
CHMP4A-201ENST00000347519 USP47Q96K76 1375 aa26.9■■□□□ 1.9
CHMP4A-201ENST00000347519 HIRIP3Q9BW71 556 aaPredicted RBP26.9■■□□□ 1.9
CHMP4A-201ENST00000347519 TBX22Q9Y458 520 aa26.9■■□□□ 1.9
CHMP4A-201ENST00000347519 HSPA5P11021 654 aaKnown RBP26.89■■□□□ 1.9
CHMP4A-201ENST00000347519 YTHDC2Q9H6S0 1430 aaKnown RBP26.87■■□□□ 1.89
CHMP4A-201ENST00000347519 PTPRUQ92729 1446 aa26.86■■□□□ 1.89
CHMP4A-201ENST00000347519 EIF4G2P78344 907 aaKnown RBP eCLIP26.86■■□□□ 1.89
CHMP4A-201ENST00000347519 FBXO41Q8TF61 875 aa26.86■■□□□ 1.89
CHMP4A-201ENST00000347519 STK26Q9P289 416 aa26.86■■□□□ 1.89
CHMP4A-201ENST00000347519 TRAK1Q9UPV9 953 aa26.85■■□□□ 1.89
CHMP4A-201ENST00000347519 ARHGEF28Q8N1W1 1705 aaKnown RBP26.85■■□□□ 1.89
CHMP4A-201ENST00000347519 LRPPRCP42704 1394 aaKnown RBP26.84■■□□□ 1.89
CHMP4A-201ENST00000347519 KNDC1Q76NI1 1749 aa26.82■■□□□ 1.88
CHMP4A-201ENST00000347519 DMRT2Q9Y5R5 561 aa26.82■■□□□ 1.88
CHMP4A-201ENST00000347519 ST20-MTHFSA0A0A6YYL1 179 aa26.81■■□□□ 1.88
CHMP4A-201ENST00000347519 CHD2O14647 1828 aaKnown RBP26.81■■□□□ 1.88
CHMP4A-201ENST00000347519 XRN1Q8IZH2 1706 aaKnown RBP26.79■■□□□ 1.88
CHMP4A-201ENST00000347519 ABCC11Q96J66 1382 aa26.78■■□□□ 1.88
CHMP4A-201ENST00000347519 DLC1Q96QB1 1528 aa26.77■■□□□ 1.88
CHMP4A-201ENST00000347519 PIK3R4Q99570 1358 aa26.77■■□□□ 1.88
CHMP4A-201ENST00000347519 TECPR2O15040 1411 aa26.76■■□□□ 1.87
CHMP4A-201ENST00000347519 CPS1P31327 1500 aa26.75■■□□□ 1.87
CHMP4A-201ENST00000347519 AMOTL2Q9Y2J4 779 aa26.75■■□□□ 1.87
CHMP4A-201ENST00000347519 QRICH2Q9H0J4 1663 aa26.74■■□□□ 1.87
CHMP4A-201ENST00000347519 EIF3AQ14152 1382 aaKnown RBP26.73■■□□□ 1.87
CHMP4A-201ENST00000347519 ROBO2Q9HCK4 1378 aa26.73■■□□□ 1.87
CHMP4A-201ENST00000347519 PLEKHH1Q9ULM0 1364 aa26.73■■□□□ 1.87
CHMP4A-201ENST00000347519 ZNF316A6NFI3 1004 aaPredicted RBP26.72■■□□□ 1.87
CHMP4A-201ENST00000347519 TESK2Q96S53 571 aa26.72■■□□□ 1.87
CHMP4A-201ENST00000347519 STRCP1A6NGW2 1772 aa26.72■■□□□ 1.87
CHMP4A-201ENST00000347519 WAPLQ7Z5K2 1190 aa26.71■■□□□ 1.87
CHMP4A-201ENST00000347519 PRAM1Q96QH2 718 aa26.71■■□□□ 1.87
CHMP4A-201ENST00000347519 NWD1Q149M9 1564 aa26.71■■□□□ 1.87
CHMP4A-201ENST00000347519 CENPJQ9HC77 1338 aaPredicted RBP26.71■■□□□ 1.87
CHMP4A-201ENST00000347519 KCNA6P17658 529 aa26.71■■□□□ 1.87
CHMP4A-201ENST00000347519 C11orf95C9JLR9 678 aaPredicted RBP26.7■■□□□ 1.86
CHMP4A-201ENST00000347519 SAFB2Q14151 953 aaKnown RBP eCLIP26.69■■□□□ 1.86
CHMP4A-201ENST00000347519 FAM135BQ49AJ0 1406 aa26.67■■□□□ 1.86
CHMP4A-201ENST00000347519 CERKQ8TCT0 537 aa26.67■■□□□ 1.86
CHMP4A-201ENST00000347519 SIRT1Q96EB6 747 aa26.67■■□□□ 1.86
CHMP4A-201ENST00000347519 PTCH1Q13635 1447 aa26.67■■□□□ 1.86
CHMP4A-201ENST00000347519 POGKQ9P215 609 aa26.66■■□□□ 1.86
CHMP4A-201ENST00000347519 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms