RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 PPRC1Q5VV67 1664 aaKnown RBP25.96■■□□□ 1.75
COL9A3-201ENST00000343916 KNSTRNQ9Y448 316 aa25.94■■□□□ 1.74
COL9A3-201ENST00000343916 GGT6Q6P531 493 aa25.93■■□□□ 1.74
COL9A3-201ENST00000343916 POGZQ7Z3K3 1410 aa25.92■■□□□ 1.74
COL9A3-201ENST00000343916 KIF1BO60333 1816 aa25.9■■□□□ 1.74
COL9A3-201ENST00000343916 CHGAP10645 457 aaKnown RBP25.9■■□□□ 1.74
COL9A3-201ENST00000343916 CDCA8Q53HL2 280 aa25.9■■□□□ 1.74
COL9A3-201ENST00000343916 MAP3K4Q9Y6R4 1608 aa25.9■■□□□ 1.74
COL9A3-201ENST00000343916 EIF3AQ14152 1382 aaKnown RBP25.9■■□□□ 1.74
COL9A3-201ENST00000343916 CFAP65Q6ZU64 1925 aaKnown RBP25.89■■□□□ 1.74
COL9A3-201ENST00000343916 MROH2AA6NES4 1674 aa25.89■■□□□ 1.74
COL9A3-201ENST00000343916 NEURL4Q96JN8 1562 aa25.88■■□□□ 1.73
COL9A3-201ENST00000343916 ABCA6Q8N139 1617 aa25.88■■□□□ 1.73
COL9A3-201ENST00000343916 AMER1Q5JTC6 1135 aaPredicted RBP25.88■■□□□ 1.73
COL9A3-201ENST00000343916 CDCA7LQ96GN5 454 aa25.88■■□□□ 1.73
COL9A3-201ENST00000343916 FRMPD1Q5SYB0 1578 aa25.87■■□□□ 1.73
COL9A3-201ENST00000343916 MYOM2P54296 1465 aa25.87■■□□□ 1.73
COL9A3-201ENST00000343916 KIAA1210Q9ULL0 1709 aa25.87■■□□□ 1.73
COL9A3-201ENST00000343916 RAPGEF3O95398 923 aa25.86■■□□□ 1.73
COL9A3-201ENST00000343916 LMTK2Q8IWU2 1503 aa25.86■■□□□ 1.73
COL9A3-201ENST00000343916 SYNMO15061 1565 aa25.86■■□□□ 1.73
COL9A3-201ENST00000343916 NPATQ14207 1427 aa25.85■■□□□ 1.73
COL9A3-201ENST00000343916 MLH3Q9UHC1 1453 aa25.85■■□□□ 1.73
COL9A3-201ENST00000343916 PPP2R1AP30153 589 aa25.85■■□□□ 1.73
COL9A3-201ENST00000343916 BLMP54132 1417 aaPredicted RBP25.83■■□□□ 1.73
COL9A3-201ENST00000343916 CFAP74Q9C0B2 1584 aa25.83■■□□□ 1.73
COL9A3-201ENST00000343916 HECW2Q9P2P5 1572 aa25.83■■□□□ 1.73
COL9A3-201ENST00000343916 NOS1P29475 1434 aa25.83■■□□□ 1.73
COL9A3-201ENST00000343916 MYOM1P52179 1685 aa25.83■■□□□ 1.73
COL9A3-201ENST00000343916 CCDC136Q96JN2 1154 aa25.82■■□□□ 1.72
COL9A3-201ENST00000343916 ADAMTS8Q9UP79 889 aa25.82■■□□□ 1.72
COL9A3-201ENST00000343916 IFT172Q9UG01 1749 aa25.82■■□□□ 1.72
COL9A3-201ENST00000343916 RCAN3Q9UKA8 241 aa25.82■■□□□ 1.72
COL9A3-201ENST00000343916 PDE3BQ13370 1112 aa25.8■■□□□ 1.72
COL9A3-201ENST00000343916 RRP1P56182 461 aaKnown RBP25.8■■□□□ 1.72
COL9A3-201ENST00000343916 MSH5O43196 834 aa25.79■■□□□ 1.72
COL9A3-201ENST00000343916 ERVK-7P63135 1459 aa25.79■■□□□ 1.72
COL9A3-201ENST00000343916 ADGRB3O60242 1522 aa25.79■■□□□ 1.72
COL9A3-201ENST00000343916 ASXL1Q8IXJ9 1541 aa25.79■■□□□ 1.72
COL9A3-201ENST00000343916 KDM5AP29375 1690 aaKnown RBP25.78■■□□□ 1.72
COL9A3-201ENST00000343916 NRXN1Q9ULB1 1477 aa25.77■■□□□ 1.72
COL9A3-201ENST00000343916 INSRP06213 1382 aa25.75■■□□□ 1.71
COL9A3-201ENST00000343916 NEO1Q92859 1461 aa25.75■■□□□ 1.71
COL9A3-201ENST00000343916 ZMYM4Q5VZL5 1548 aa25.74■■□□□ 1.71
COL9A3-201ENST00000343916 GLI2P10070 1586 aa25.74■■□□□ 1.71
COL9A3-201ENST00000343916 TRAK1Q9UPV9 953 aa25.74■■□□□ 1.71
COL9A3-201ENST00000343916 WDR43Q15061 677 aaKnown RBP eCLIP25.73■■□□□ 1.712e-6■□□□□ 9.2
COL9A3-201ENST00000343916 ABCC3O15438 1527 aa25.73■■□□□ 1.71
COL9A3-201ENST00000343916 NUTM2DQ5VT03 806 aaPredicted RBP25.72■■□□□ 1.71
COL9A3-201ENST00000343916 TMEM132EQ6IEE7 984 aa25.72■■□□□ 1.71
COL9A3-201ENST00000343916 EXOC6Q8TAG9 804 aa25.72■■□□□ 1.71
COL9A3-201ENST00000343916 FAM69CQ0P6D2 419 aa25.71■■□□□ 1.71
COL9A3-201ENST00000343916 CARD14Q9BXL6 1004 aa25.71■■□□□ 1.71
COL9A3-201ENST00000343916 DIP2BQ9P265 1576 aa25.7■■□□□ 1.7
COL9A3-201ENST00000343916 PIK3C2GO75747 1445 aa25.7■■□□□ 1.7
COL9A3-201ENST00000343916 CENPJQ9HC77 1338 aaPredicted RBP25.69■■□□□ 1.7
COL9A3-201ENST00000343916 NPC1L1Q9UHC9 1359 aa25.68■■□□□ 1.7
COL9A3-201ENST00000343916 C14orf93Q9H972 538 aaKnown RBP25.68■■□□□ 1.7
COL9A3-201ENST00000343916 PPLO60437 1756 aa25.68■■□□□ 1.7
COL9A3-201ENST00000343916 SLC24A1O60721 1099 aa25.68■■□□□ 1.7
COL9A3-201ENST00000343916 FANCIQ9NVI1 1328 aa25.67■■□□□ 1.7
COL9A3-201ENST00000343916 PLIN1O60240 522 aa25.66■■□□□ 1.7
COL9A3-201ENST00000343916 PLEKHH1Q9ULM0 1364 aa25.66■■□□□ 1.7
COL9A3-201ENST00000343916 SIGLEC1Q9BZZ2 1709 aa25.66■■□□□ 1.7
COL9A3-201ENST00000343916 CAMSAP1Q5T5Y3 1602 aa25.65■■□□□ 1.7
COL9A3-201ENST00000343916 DIP2CQ9Y2E4 1556 aa25.65■■□□□ 1.7
COL9A3-201ENST00000343916 BCL11AQ9H165 835 aa25.65■■□□□ 1.7
COL9A3-201ENST00000343916 MYO3AQ8NEV4 1616 aa25.65■■□□□ 1.7
COL9A3-201ENST00000343916 SETBP1Q9Y6X0 1596 aa25.64■■□□□ 1.7
COL9A3-201ENST00000343916 SBNO2Q9Y2G9 1366 aa25.64■■□□□ 1.69
COL9A3-201ENST00000343916 CCDC146Q8IYE0 955 aa25.63■■□□□ 1.69
COL9A3-201ENST00000343916 SENP3Q9H4L4 574 aaPredicted RBP25.62■■□□□ 1.69
COL9A3-201ENST00000343916 YEATS2Q9ULM3 1422 aa25.62■■□□□ 1.69
COL9A3-201ENST00000343916 ADGRB1O14514 1584 aa25.62■■□□□ 1.69
COL9A3-201ENST00000343916 RPGRIP1LQ68CZ1 1315 aa25.6■■□□□ 1.69
COL9A3-201ENST00000343916 SLC12A5Q9H2X9 1139 aa25.59■■□□□ 1.69
COL9A3-201ENST00000343916 RICTORQ6R327 1708 aa25.59■■□□□ 1.69
COL9A3-201ENST00000343916 IDI1Q13907 227 aa25.57■■□□□ 1.68
COL9A3-201ENST00000343916 QRICH2Q9H0J4 1663 aa25.57■■□□□ 1.68
COL9A3-201ENST00000343916 ZNF521Q96K83 1311 aa25.56■■□□□ 1.68
COL9A3-201ENST00000343916 DUSP27Q5VZP5 1158 aa25.56■■□□□ 1.68
COL9A3-201ENST00000343916 TSPOAP1O95153 1857 aa25.55■■□□□ 1.68
COL9A3-201ENST00000343916 PIK3C2BO00750 1634 aa25.55■■□□□ 1.68
COL9A3-201ENST00000343916 NSD3Q9BZ95 1437 aa25.54■■□□□ 1.68
COL9A3-201ENST00000343916 VGFO15240 615 aaPredicted RBP25.54■■□□□ 1.68
COL9A3-201ENST00000343916 APAF1O14727 1248 aa25.53■■□□□ 1.68
COL9A3-201ENST00000343916 TNNT2P45379 298 aaPredicted RBP25.53■■□□□ 1.68
COL9A3-201ENST00000343916 GOLGA2Q08379 1002 aa25.53■■□□□ 1.68
COL9A3-201ENST00000343916 ERICH6Q7L0X2 663 aa25.53■■□□□ 1.68
COL9A3-201ENST00000343916 ZC3H13Q5T200 1668 aaKnown RBP25.53■■□□□ 1.68
COL9A3-201ENST00000343916 NEXMIFQ5QGS0 1516 aa25.52■■□□□ 1.68
COL9A3-201ENST00000343916 CRBNQ96SW2 442 aa25.51■■□□□ 1.67
COL9A3-201ENST00000343916 C20orf194Q5TEA3 1177 aa25.51■■□□□ 1.67
COL9A3-201ENST00000343916 SAFB2Q14151 953 aaKnown RBP eCLIP25.5■■□□□ 1.67
COL9A3-201ENST00000343916 ARHGAP31Q2M1Z3 1444 aa25.49■■□□□ 1.67
COL9A3-201ENST00000343916 SPINK5Q9NQ38 1064 aaPredicted RBP25.48■■□□□ 1.67
COL9A3-201ENST00000343916 MORC1Q86VD1 984 aa25.47■■□□□ 1.67
COL9A3-201ENST00000343916 KIF13AQ9H1H9 1805 aa25.46■■□□□ 1.67
COL9A3-201ENST00000343916 SLFN5Q08AF3 891 aa25.46■■□□□ 1.67
COL9A3-201ENST00000343916 SLC52A1Q9NWF4 448 aa25.45■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms