RNA–Protein interactions for RNA: ENST00000342503.8

RTN1-202, Transcript of reticulon 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene RTN1, Length 1,703 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN1-202ENST00000342503 SCAF1Q9H7N4 1312 aaKnown RBP27.66■■■□□ 2.02
RTN1-202ENST00000342503 PREX1Q8TCU6 1659 aa27.66■■■□□ 2.02
RTN1-202ENST00000342503 ADGRF5Q8IZF2 1346 aa27.65■■■□□ 2.02
RTN1-202ENST00000342503 NRXN1Q9ULB1 1477 aa27.64■■■□□ 2.02
RTN1-202ENST00000342503 TESK2Q96S53 571 aa27.62■■■□□ 2.01
RTN1-202ENST00000342503 PRKRIP1Q9H875 184 aaPredicted RBP27.62■■■□□ 2.01
RTN1-202ENST00000342503 SCAF11Q99590 1463 aaKnown RBP27.61■■■□□ 2.01
RTN1-202ENST00000342503 CLTCQ00610 1675 aaKnown RBP27.6■■■□□ 2.01
RTN1-202ENST00000342503 CFAP70Q5T0N1 1121 aa27.57■■■□□ 2
RTN1-202ENST00000342503 PPP6R1Q9UPN7 881 aa27.57■■■□□ 2
RTN1-202ENST00000342503 RPGRIP1LQ68CZ1 1315 aa27.57■■■□□ 2
RTN1-202ENST00000342503 DISP3Q9P2K9 1392 aa27.57■■■□□ 2
RTN1-202ENST00000342503 MYO5BQ9ULV0 1848 aa27.54■■■□□ 2
RTN1-202ENST00000342503 IDI1Q13907 227 aa27.53■■■□□ 2
RTN1-202ENST00000342503 TMF1P82094 1093 aa27.53■■■□□ 2
RTN1-202ENST00000342503 SLC52A1Q9NWF4 448 aa27.53■■■□□ 2
RTN1-202ENST00000342503 ERVK-7P63135 1459 aa27.52■■■□□ 2
RTN1-202ENST00000342503 NEXMIFQ5QGS0 1516 aa27.52■■■□□ 2
RTN1-202ENST00000342503 PIK3C2GO75747 1445 aa27.51■■□□□ 1.99
RTN1-202ENST00000342503 SETBP1Q9Y6X0 1596 aa27.5■■□□□ 1.99
RTN1-202ENST00000342503 MLECQ14165 292 aa27.5■■□□□ 1.99
RTN1-202ENST00000342503 FBXO31Q5XUX0 539 aaPredicted RBP27.5■■□□□ 1.99
RTN1-202ENST00000342503 TMEM131LA2VDJ0 1609 aa27.49■■□□□ 1.99
RTN1-202ENST00000342503 EIF3AQ14152 1382 aaKnown RBP27.49■■□□□ 1.99
RTN1-202ENST00000342503 GTF3C3Q9Y5Q9 886 aa27.49■■□□□ 1.99
RTN1-202ENST00000342503 CCDC184Q52MB2 194 aa27.47■■□□□ 1.99
RTN1-202ENST00000342503 C14orf93Q9H972 538 aaKnown RBP27.44■■□□□ 1.98
RTN1-202ENST00000342503 SPATA31D1Q6ZQQ2 1576 aa27.43■■□□□ 1.98
RTN1-202ENST00000342503 MYO3AQ8NEV4 1616 aa27.43■■□□□ 1.98
RTN1-202ENST00000342503 CNGB1Q14028 1251 aaPredicted RBP27.42■■□□□ 1.98
RTN1-202ENST00000342503 VGFO15240 615 aaPredicted RBP27.41■■□□□ 1.98
RTN1-202ENST00000342503 ADGRB1O14514 1584 aa27.41■■□□□ 1.98
RTN1-202ENST00000342503 NUTM2DQ5VT03 806 aaPredicted RBP27.41■■□□□ 1.98
RTN1-202ENST00000342503 MRS2Q9HD23 443 aa27.39■■□□□ 1.98
RTN1-202ENST00000342503 ZFYVE9O95405 1425 aa27.38■■□□□ 1.97
RTN1-202ENST00000342503 CDCA8Q53HL2 280 aa27.36■■□□□ 1.97
RTN1-202ENST00000342503 KDM5AP29375 1690 aaKnown RBP27.35■■□□□ 1.97
RTN1-202ENST00000342503 PER1O15534 1290 aaPredicted RBP27.34■■□□□ 1.97
RTN1-202ENST00000342503 ESF1Q9H501 851 aaKnown RBP27.34■■□□□ 1.97
RTN1-202ENST00000342503 TRHP20396 242 aaPredicted RBP27.33■■□□□ 1.97
RTN1-202ENST00000342503 PHF23Q9BUL5 403 aaPredicted RBP27.33■■□□□ 1.97
RTN1-202ENST00000342503 PANK3Q9H999 370 aa27.33■■□□□ 1.97
RTN1-202ENST00000342503 KTN1Q86UP2 1357 aaKnown RBP27.33■■□□□ 1.96
RTN1-202ENST00000342503 MYOM1P52179 1685 aa27.32■■□□□ 1.96
RTN1-202ENST00000342503 ZMYM3Q14202 1370 aa27.32■■□□□ 1.96
RTN1-202ENST00000342503 TMEM132EQ6IEE7 984 aa27.32■■□□□ 1.96
RTN1-202ENST00000342503 SLC24A1O60721 1099 aa27.31■■□□□ 1.96
RTN1-202ENST00000342503 QRICH2Q9H0J4 1663 aa27.31■■□□□ 1.96
RTN1-202ENST00000342503 RALBP1Q15311 655 aa27.3■■□□□ 1.96
RTN1-202ENST00000342503 TRAK1Q9UPV9 953 aa27.3■■□□□ 1.96
RTN1-202ENST00000342503 STAG3Q9UJ98 1225 aa27.3■■□□□ 1.96
RTN1-202ENST00000342503 CENPJQ9HC77 1338 aaPredicted RBP27.28■■□□□ 1.96
RTN1-202ENST00000342503 FAM9BQ8IZU0 186 aa27.28■■□□□ 1.96
RTN1-202ENST00000342503 SBNO2Q9Y2G9 1366 aa27.28■■□□□ 1.96
RTN1-202ENST00000342503 A2ML1A8K2U0 1454 aa27.28■■□□□ 1.96
RTN1-202ENST00000342503 ARHGEF28Q8N1W1 1705 aaKnown RBP27.27■■□□□ 1.96
RTN1-202ENST00000342503 HNRNPUQ00839 825 aaKnown RBP eCLIP27.27■■□□□ 1.96
RTN1-202ENST00000342503 MYBBP1AQ9BQG0 1328 aaKnown RBP27.25■■□□□ 1.95
RTN1-202ENST00000342503 PARD3Q8TEW0 1356 aa27.25■■□□□ 1.95
RTN1-202ENST00000342503 ASXL1Q8IXJ9 1541 aa27.25■■□□□ 1.95
RTN1-202ENST00000342503 BRD4O60885 1362 aaPredicted RBP27.19■■□□□ 1.94
RTN1-202ENST00000342503 ALKQ9UM73 1620 aa27.19■■□□□ 1.94
RTN1-202ENST00000342503 RIMS2Q9UQ26 1411 aa27.19■■□□□ 1.94
RTN1-202ENST00000342503 CC2D1BQ5T0F9 858 aaKnown RBP27.19■■□□□ 1.94
RTN1-202ENST00000342503 TNRQ92752 1358 aa27.18■■□□□ 1.94
RTN1-202ENST00000342503 TMC1Q8TDI8 760 aa27.17■■□□□ 1.94
RTN1-202ENST00000342503 KNSTRNQ9Y448 316 aa27.14■■□□□ 1.94
RTN1-202ENST00000342503 PNISRQ8TF01 805 aaKnown RBP27.13■■□□□ 1.93
RTN1-202ENST00000342503 FER1L4A9Z1Z3 1794 aa27.12■■□□□ 1.93
RTN1-202ENST00000342503 NLRP13Q86W25 1043 aa27.12■■□□□ 1.93
RTN1-202ENST00000342503 UBR1Q8IWV7 1749 aa27.11■■□□□ 1.93
RTN1-202ENST00000342503 STK26Q9P289 416 aa27.11■■□□□ 1.93
RTN1-202ENST00000342503 SETD1AO15047 1707 aaKnown RBP27.11■■□□□ 1.93
RTN1-202ENST00000342503 YTHDC2Q9H6S0 1430 aaKnown RBP27.11■■□□□ 1.93
RTN1-202ENST00000342503 C3P01024 1663 aa27.1■■□□□ 1.93
RTN1-202ENST00000342503 PTPRMP28827 1452 aa27.09■■□□□ 1.93
RTN1-202ENST00000342503 AMER1Q5JTC6 1135 aaPredicted RBP27.09■■□□□ 1.93
RTN1-202ENST00000342503 TULP4Q9NRJ4 1543 aa27.09■■□□□ 1.93
RTN1-202ENST00000342503 DNAJC5Q9H3Z4 198 aa27.07■■□□□ 1.92
RTN1-202ENST00000342503 NRXN3Q9Y4C0 1643 aa27.07■■□□□ 1.92
RTN1-202ENST00000342503 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.06■■□□□ 1.92
RTN1-202ENST00000342503 ZBED9Q6R2W3 1325 aa27.05■■□□□ 1.92
RTN1-202ENST00000342503 EVC2Q86UK5 1308 aa27.05■■□□□ 1.92
RTN1-202ENST00000342503 LRPPRCP42704 1394 aaKnown RBP27.04■■□□□ 1.92
RTN1-202ENST00000342503 NPC1L1Q9UHC9 1359 aa27.04■■□□□ 1.92
RTN1-202ENST00000342503 CEBPAP49715 358 aaPredicted RBP27.04■■□□□ 1.92
RTN1-202ENST00000342503 SAFB2Q14151 953 aaKnown RBP eCLIP27.02■■□□□ 1.92
RTN1-202ENST00000342503 PUS7Q96PZ0 661 aaKnown RBP27.02■■□□□ 1.92
RTN1-202ENST00000342503 CARD14Q9BXL6 1004 aa27.02■■□□□ 1.92
RTN1-202ENST00000342503 NLRP1Q9C000 1473 aa27.01■■□□□ 1.91
RTN1-202ENST00000342503 PRAM1Q96QH2 718 aa27■■□□□ 1.91
RTN1-202ENST00000342503 HDGFP51858 240 aaKnown RBP26.99■■□□□ 1.91
RTN1-202ENST00000342503 TMEM2Q9UHN6 1383 aa26.99■■□□□ 1.91
RTN1-202ENST00000342503 DLC1Q96QB1 1528 aa26.99■■□□□ 1.91
RTN1-202ENST00000342503 POGKQ9P215 609 aa26.99■■□□□ 1.91
RTN1-202ENST00000342503 SLC12A5Q9H2X9 1139 aa26.98■■□□□ 1.91
RTN1-202ENST00000342503 PPP2R1AP30153 589 aa26.96■■□□□ 1.91
RTN1-202ENST00000342503 CABP2Q9NPB3 220 aa26.96■■□□□ 1.91
RTN1-202ENST00000342503 MINK1Q8N4C8 1332 aaPredicted RBP26.94■■□□□ 1.9
RTN1-202ENST00000342503 PLPPR3Q6T4P5 718 aa26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms