RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 TCP11L2Q8N4U5 519 aa10.53□□□□□ -0.72
HPS4-201ENST00000336873 GPATCH8Q9UKJ3 1502 aaKnown RBP10.53□□□□□ -0.72
HPS4-201ENST00000336873 SCAPERQ9BY12 1400 aa10.53□□□□□ -0.72
HPS4-201ENST00000336873 SPINK5Q9NQ38 1064 aaPredicted RBP10.53□□□□□ -0.72
HPS4-201ENST00000336873 NCLP19338 710 aaKnown RBP10.52□□□□□ -0.72
HPS4-201ENST00000336873 BACH2Q9BYV9 841 aa10.52□□□□□ -0.72
HPS4-201ENST00000336873 TNNQ9UQP3 1299 aa10.52□□□□□ -0.72
HPS4-201ENST00000336873 SMG6Q86US8 1419 aaKnown RBP10.52□□□□□ -0.72
HPS4-201ENST00000336873 LMOD2Q6P5Q4 547 aa10.52□□□□□ -0.73
HPS4-201ENST00000336873 ZNF428Q96B54 188 aa10.52□□□□□ -0.73
HPS4-201ENST00000336873 DHX29Q7Z478 1369 aaKnown RBP10.52□□□□□ -0.73
HPS4-201ENST00000336873 PLEKHH2Q8IVE3 1493 aa10.52□□□□□ -0.73
HPS4-201ENST00000336873 FRAT2O75474 233 aaPredicted RBP10.51□□□□□ -0.73
HPS4-201ENST00000336873 GLIPR1L2Q4G1C9 344 aa10.51□□□□□ -0.73
HPS4-201ENST00000336873 ADGRF5Q8IZF2 1346 aa10.51□□□□□ -0.73
HPS4-201ENST00000336873 BRPF3Q9ULD4 1205 aa10.51□□□□□ -0.73
HPS4-201ENST00000336873 BECN1Q14457 450 aa10.51□□□□□ -0.73
HPS4-201ENST00000336873 FAM161AQ3B820 660 aa10.5□□□□□ -0.73
HPS4-201ENST00000336873 ROCK1Q13464 1354 aa10.5□□□□□ -0.73
HPS4-201ENST00000336873 NFKBIBQ15653 356 aa10.49□□□□□ -0.73
HPS4-201ENST00000336873 DMRT2Q9Y5R5 561 aa10.49□□□□□ -0.73
HPS4-201ENST00000336873 CENPQQ7L2Z9 268 aaPredicted RBP10.49□□□□□ -0.73
HPS4-201ENST00000336873 C1orf115Q9H7X2 142 aa10.49□□□□□ -0.73
HPS4-201ENST00000336873 PBRM1Q86U86 1689 aa10.49□□□□□ -0.73
HPS4-201ENST00000336873 THUMPD2Q9BTF0 503 aaKnown RBP10.49□□□□□ -0.73
HPS4-201ENST00000336873 TCOF1Q13428 1488 aaKnown RBP10.48□□□□□ -0.73
HPS4-201ENST00000336873 NECTIN2Q92692 538 aa10.48□□□□□ -0.73
HPS4-201ENST00000336873 PKNOX2Q96KN3 472 aa10.48□□□□□ -0.73
HPS4-201ENST00000336873 PODXL2Q9NZ53 605 aa10.48□□□□□ -0.73
HPS4-201ENST00000336873 TESK2Q96S53 571 aa10.48□□□□□ -0.73
HPS4-201ENST00000336873 NUP160Q12769 1436 aa10.48□□□□□ -0.73
HPS4-201ENST00000336873 DISP1Q96F81 1524 aa10.48□□□□□ -0.73
HPS4-201ENST00000336873 RNF123Q5XPI4 1314 aa10.48□□□□□ -0.73
HPS4-201ENST00000336873 PER1O15534 1290 aaPredicted RBP10.48□□□□□ -0.73
HPS4-201ENST00000336873 TRHP20396 242 aaPredicted RBP10.48□□□□□ -0.73
HPS4-201ENST00000336873 LNPKQ9C0E8 428 aa10.48□□□□□ -0.73
HPS4-201ENST00000336873 MBD5Q9P267 1494 aa10.48□□□□□ -0.73
HPS4-201ENST00000336873 E9PSI1 815 aa10.47□□□□□ -0.73
HPS4-201ENST00000336873 ERBINQ96RT1 1412 aa10.47□□□□□ -0.73
HPS4-201ENST00000336873 KIAA0556O60303 1618 aa10.47□□□□□ -0.73
HPS4-201ENST00000336873 FOXD4L5Q5VV16 416 aaPredicted RBP10.47□□□□□ -0.73
HPS4-201ENST00000336873 FOXD4L4Q8WXT5 416 aaPredicted RBP10.47□□□□□ -0.73
HPS4-201ENST00000336873 RIPK4P57078 832 aa10.47□□□□□ -0.73
HPS4-201ENST00000336873 NOL8Q76FK4 1167 aaKnown RBP10.47□□□□□ -0.73
HPS4-201ENST00000336873 LTV1Q96GA3 475 aaPredicted RBP10.47□□□□□ -0.73
HPS4-201ENST00000336873 ATP10BO94823 1461 aa10.47□□□□□ -0.73
HPS4-201ENST00000336873 E9PCH4 1651 aa10.46□□□□□ -0.73
HPS4-201ENST00000336873 DUSP27Q5VZP5 1158 aa10.46□□□□□ -0.73
HPS4-201ENST00000336873 TAOK2Q9UL54 1235 aa10.46□□□□□ -0.73
HPS4-201ENST00000336873 SLC4A10Q6U841 1118 aa10.46□□□□□ -0.73
HPS4-201ENST00000336873 IGHDP01880 384 aa10.46□□□□□ -0.74
HPS4-201ENST00000336873 FOXD4L6Q3SYB3 417 aaPredicted RBP10.46□□□□□ -0.74
HPS4-201ENST00000336873 FOXD4L3Q6VB84 417 aaPredicted RBP10.46□□□□□ -0.74
HPS4-201ENST00000336873 MYH16Q9H6N6 1097 aa10.46□□□□□ -0.74
HPS4-201ENST00000336873 PZPP20742 1482 aa10.45□□□□□ -0.74
HPS4-201ENST00000336873 EXOSC9Q06265 439 aaKnown RBP10.45□□□□□ -0.74
HPS4-201ENST00000336873 FAM69CQ0P6D2 419 aa10.45□□□□□ -0.74
HPS4-201ENST00000336873 RAPGEF6Q8TEU7 1601 aa10.45□□□□□ -0.74
HPS4-201ENST00000336873 KDM5CP41229 1560 aa10.44□□□□□ -0.74
HPS4-201ENST00000336873 HSP90AB1P08238 724 aaKnown RBP10.44□□□□□ -0.74
HPS4-201ENST00000336873 ANKRD45Q5TZF3 282 aa10.44□□□□□ -0.74
HPS4-201ENST00000336873 RWDD1Q9H446 243 aaPredicted RBP10.44□□□□□ -0.74
HPS4-201ENST00000336873 NUTM2GQ5VZR2 741 aa10.44□□□□□ -0.74
HPS4-201ENST00000336873 WWC1Q8IX03 1113 aa10.44□□□□□ -0.74
HPS4-201ENST00000336873 SLFN5Q08AF3 891 aa10.43□□□□□ -0.74
HPS4-201ENST00000336873 GSE1Q14687 1217 aa10.43□□□□□ -0.74
HPS4-201ENST00000336873 CGNL1Q0VF96 1302 aa10.43□□□□□ -0.74
HPS4-201ENST00000336873 UBE2Q2Q8WVN8 375 aa10.43□□□□□ -0.74
HPS4-201ENST00000336873 HDGFL2Q7Z4V5 671 aaPredicted RBP10.42□□□□□ -0.74
HPS4-201ENST00000336873 PRAM1Q96QH2 718 aa10.42□□□□□ -0.74
HPS4-201ENST00000336873 EIF3AQ14152 1382 aaKnown RBP10.42□□□□□ -0.74
HPS4-201ENST00000336873 PLEKHH1Q9ULM0 1364 aa10.42□□□□□ -0.74
HPS4-201ENST00000336873 CARD14Q9BXL6 1004 aa10.42□□□□□ -0.74
HPS4-201ENST00000336873 AMER1Q5JTC6 1135 aaPredicted RBP10.42□□□□□ -0.74
HPS4-201ENST00000336873 RUNDC1Q96C34 613 aa10.42□□□□□ -0.74
HPS4-201ENST00000336873 PDZRN3Q9UPQ7 1066 aa10.42□□□□□ -0.74
HPS4-201ENST00000336873 WAPLQ7Z5K2 1190 aa10.41□□□□□ -0.74
HPS4-201ENST00000336873 CABP1Q9NZU7 370 aa10.41□□□□□ -0.74
HPS4-201ENST00000336873 CEP170Q5SW79 1584 aa10.41□□□□□ -0.74
HPS4-201ENST00000336873 SEC24BO95487 1268 aa10.41□□□□□ -0.74
HPS4-201ENST00000336873 DCTN1Q14203 1278 aa10.41□□□□□ -0.74
HPS4-201ENST00000336873 FBXO31Q5XUX0 539 aaPredicted RBP10.41□□□□□ -0.74
HPS4-201ENST00000336873 MS4A1P11836 297 aa10.41□□□□□ -0.74
HPS4-201ENST00000336873 ZKSCAN2Q63HK3 967 aa10.41□□□□□ -0.74
HPS4-201ENST00000336873 DZIP1LQ8IYY4 767 aaKnown RBP10.4□□□□□ -0.74
HPS4-201ENST00000336873 ARID3AQ99856 593 aa10.4□□□□□ -0.74
HPS4-201ENST00000336873 KIF14Q15058 1648 aa10.4□□□□□ -0.74
HPS4-201ENST00000336873 EVC2Q86UK5 1308 aa10.39□□□□□ -0.75
HPS4-201ENST00000336873 VGFO15240 615 aaPredicted RBP10.39□□□□□ -0.75
HPS4-201ENST00000336873 RRS1Q15050 365 aaKnown RBP10.39□□□□□ -0.75
HPS4-201ENST00000336873 HSCBQ8IWL3 235 aa10.39□□□□□ -0.75
HPS4-201ENST00000336873 TERF2IPQ9NYB0 399 aa10.39□□□□□ -0.75
HPS4-201ENST00000336873 PMFBP1Q8TBY8 1022 aa10.39□□□□□ -0.75
HPS4-201ENST00000336873 CCDC141Q6ZP82 1450 aa10.38□□□□□ -0.75
HPS4-201ENST00000336873 A0A0G2JS52 829 aa10.38□□□□□ -0.75
HPS4-201ENST00000336873 RLBP1P12271 317 aa10.38□□□□□ -0.75
HPS4-201ENST00000336873 PRKAR2BP31323 418 aa10.38□□□□□ -0.75
HPS4-201ENST00000336873 TXNDC2Q86VQ3 553 aa10.38□□□□□ -0.75
HPS4-201ENST00000336873 NOB1Q9ULX3 412 aaKnown RBP10.38□□□□□ -0.75
HPS4-201ENST00000336873 CFAP65Q6ZU64 1925 aaKnown RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms