RNA–Protein interactions for RNA: ENST00000320578.2

RAB39A-201, Transcript of RAB39A, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB39A, Length 1,830 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB39A-201ENST00000320578 IDI1Q13907 227 aa24.74■■□□□ 1.55
RAB39A-201ENST00000320578 DNAJC5Q9H3Z4 198 aa24.74■■□□□ 1.55
RAB39A-201ENST00000320578 PPLO60437 1756 aa24.74■■□□□ 1.55
RAB39A-201ENST00000320578 CFAP65Q6ZU64 1925 aaKnown RBP24.73■■□□□ 1.55
RAB39A-201ENST00000320578 IQGAP1P46940 1657 aa24.73■■□□□ 1.55
RAB39A-201ENST00000320578 ZFYVE9O95405 1425 aa24.72■■□□□ 1.55
RAB39A-201ENST00000320578 CHGAP10645 457 aaKnown RBP24.72■■□□□ 1.55
RAB39A-201ENST00000320578 TESK2Q96S53 571 aa24.72■■□□□ 1.55
RAB39A-201ENST00000320578 SPATA31D1Q6ZQQ2 1576 aa24.71■■□□□ 1.55
RAB39A-201ENST00000320578 PIK3C2GO75747 1445 aa24.7■■□□□ 1.55
RAB39A-201ENST00000320578 CLTCQ00610 1675 aaKnown RBP24.7■■□□□ 1.54
RAB39A-201ENST00000320578 SETBP1Q9Y6X0 1596 aa24.7■■□□□ 1.54
RAB39A-201ENST00000320578 SLC24A1O60721 1099 aa24.69■■□□□ 1.54
RAB39A-201ENST00000320578 EIF3AQ14152 1382 aaKnown RBP24.69■■□□□ 1.54
RAB39A-201ENST00000320578 VGFO15240 615 aaPredicted RBP24.68■■□□□ 1.54
RAB39A-201ENST00000320578 NEXMIFQ5QGS0 1516 aa24.67■■□□□ 1.54
RAB39A-201ENST00000320578 C14orf93Q9H972 538 aaKnown RBP24.67■■□□□ 1.54
RAB39A-201ENST00000320578 TMEM131LA2VDJ0 1609 aa24.66■■□□□ 1.54
RAB39A-201ENST00000320578 TRHP20396 242 aaPredicted RBP24.65■■□□□ 1.54
RAB39A-201ENST00000320578 CFAP70Q5T0N1 1121 aa24.65■■□□□ 1.54
RAB39A-201ENST00000320578 TMF1P82094 1093 aa24.65■■□□□ 1.54
RAB39A-201ENST00000320578 FBXO31Q5XUX0 539 aaPredicted RBP24.65■■□□□ 1.54
RAB39A-201ENST00000320578 ESF1Q9H501 851 aaKnown RBP24.64■■□□□ 1.54
RAB39A-201ENST00000320578 ZMYM3Q14202 1370 aa24.63■■□□□ 1.53
RAB39A-201ENST00000320578 MLECQ14165 292 aa24.62■■□□□ 1.53
RAB39A-201ENST00000320578 PRKRIP1Q9H875 184 aaPredicted RBP24.61■■□□□ 1.53
RAB39A-201ENST00000320578 YTHDC1Q96MU7 727 aaKnown RBP24.61■■□□□ 1.53
RAB39A-201ENST00000320578 CDCA8Q53HL2 280 aa24.59■■□□□ 1.53
RAB39A-201ENST00000320578 ADGRB1O14514 1584 aa24.58■■□□□ 1.53
RAB39A-201ENST00000320578 DISP3Q9P2K9 1392 aa24.58■■□□□ 1.53
RAB39A-201ENST00000320578 SBNO2Q9Y2G9 1366 aa24.57■■□□□ 1.52
RAB39A-201ENST00000320578 MYO3AQ8NEV4 1616 aa24.55■■□□□ 1.52
RAB39A-201ENST00000320578 POLR3GLQ9BT43 218 aa24.55■■□□□ 1.52
RAB39A-201ENST00000320578 KTN1Q86UP2 1357 aaKnown RBP24.54■■□□□ 1.52
RAB39A-201ENST00000320578 A2ML1A8K2U0 1454 aa24.53■■□□□ 1.52
RAB39A-201ENST00000320578 STAG3Q9UJ98 1225 aa24.5■■□□□ 1.51
RAB39A-201ENST00000320578 MYO5BQ9ULV0 1848 aa24.5■■□□□ 1.51
RAB39A-201ENST00000320578 KDM5AP29375 1690 aaKnown RBP24.49■■□□□ 1.51
RAB39A-201ENST00000320578 TNRQ92752 1358 aa24.49■■□□□ 1.51
RAB39A-201ENST00000320578 CENPJQ9HC77 1338 aaPredicted RBP24.46■■□□□ 1.51
RAB39A-201ENST00000320578 PER1O15534 1290 aaPredicted RBP24.45■■□□□ 1.5
RAB39A-201ENST00000320578 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.45■■□□□ 1.5
RAB39A-201ENST00000320578 RIMS2Q9UQ26 1411 aa24.44■■□□□ 1.5
RAB39A-201ENST00000320578 RALBP1Q15311 655 aa24.43■■□□□ 1.5
RAB39A-201ENST00000320578 NLRP1Q9C000 1473 aa24.42■■□□□ 1.5
RAB39A-201ENST00000320578 HDGFP51858 240 aaKnown RBP24.42■■□□□ 1.5
RAB39A-201ENST00000320578 NUTM2DQ5VT03 806 aaPredicted RBP24.41■■□□□ 1.5
RAB39A-201ENST00000320578 PUS7Q96PZ0 661 aaKnown RBP24.41■■□□□ 1.5
RAB39A-201ENST00000320578 TMEM132EQ6IEE7 984 aa24.4■■□□□ 1.5
RAB39A-201ENST00000320578 TRAK1Q9UPV9 953 aa24.4■■□□□ 1.5
RAB39A-201ENST00000320578 PANK3Q9H999 370 aa24.38■■□□□ 1.49
RAB39A-201ENST00000320578 ASXL1Q8IXJ9 1541 aa24.38■■□□□ 1.49
RAB39A-201ENST00000320578 ALKQ9UM73 1620 aa24.38■■□□□ 1.49
RAB39A-201ENST00000320578 PARD3Q8TEW0 1356 aa24.35■■□□□ 1.49
RAB39A-201ENST00000320578 ARHGEF28Q8N1W1 1705 aaKnown RBP24.34■■□□□ 1.49
RAB39A-201ENST00000320578 MRS2Q9HD23 443 aa24.34■■□□□ 1.49
RAB39A-201ENST00000320578 FER1L4A9Z1Z3 1794 aa24.34■■□□□ 1.49
RAB39A-201ENST00000320578 QRICH2Q9H0J4 1663 aa24.33■■□□□ 1.49
RAB39A-201ENST00000320578 YTHDC2Q9H6S0 1430 aaKnown RBP24.33■■□□□ 1.49
RAB39A-201ENST00000320578 TMEM2Q9UHN6 1383 aa24.33■■□□□ 1.48
RAB39A-201ENST00000320578 C3P01024 1663 aa24.32■■□□□ 1.48
RAB39A-201ENST00000320578 MYBBP1AQ9BQG0 1328 aaKnown RBP24.32■■□□□ 1.48
RAB39A-201ENST00000320578 UBR1Q8IWV7 1749 aa24.32■■□□□ 1.48
RAB39A-201ENST00000320578 NPC1L1Q9UHC9 1359 aa24.31■■□□□ 1.48
RAB39A-201ENST00000320578 CCDC184Q52MB2 194 aa24.31■■□□□ 1.48
RAB39A-201ENST00000320578 MYOM1P52179 1685 aa24.31■■□□□ 1.48
RAB39A-201ENST00000320578 BRD4O60885 1362 aaPredicted RBP24.3■■□□□ 1.48
RAB39A-201ENST00000320578 DLC1Q96QB1 1528 aa24.3■■□□□ 1.48
RAB39A-201ENST00000320578 PTPRMP28827 1452 aa24.28■■□□□ 1.48
RAB39A-201ENST00000320578 LRPPRCP42704 1394 aaKnown RBP24.28■■□□□ 1.48
RAB39A-201ENST00000320578 EVC2Q86UK5 1308 aa24.28■■□□□ 1.48
RAB39A-201ENST00000320578 KNSTRNQ9Y448 316 aa24.27■■□□□ 1.48
RAB39A-201ENST00000320578 SETD1AO15047 1707 aaKnown RBP24.26■■□□□ 1.47
RAB39A-201ENST00000320578 ABCC11Q96J66 1382 aa24.26■■□□□ 1.47
RAB39A-201ENST00000320578 NRXN3Q9Y4C0 1643 aa24.25■■□□□ 1.47
RAB39A-201ENST00000320578 CEBPAP49715 358 aaPredicted RBP24.25■■□□□ 1.47
RAB39A-201ENST00000320578 NLRP13Q86W25 1043 aa24.24■■□□□ 1.47
RAB39A-201ENST00000320578 SIRT1Q96EB6 747 aa24.24■■□□□ 1.47
RAB39A-201ENST00000320578 SLIT1O75093 1534 aa24.23■■□□□ 1.47
RAB39A-201ENST00000320578 AMER1Q5JTC6 1135 aaPredicted RBP24.23■■□□□ 1.47
RAB39A-201ENST00000320578 ARHGAP23Q9P227 1491 aa24.23■■□□□ 1.47
RAB39A-201ENST00000320578 TULP4Q9NRJ4 1543 aa24.22■■□□□ 1.47
RAB39A-201ENST00000320578 PLEKHG1Q9ULL1 1385 aa24.22■■□□□ 1.47
RAB39A-201ENST00000320578 TMC1Q8TDI8 760 aa24.21■■□□□ 1.47
RAB39A-201ENST00000320578 STK26Q9P289 416 aa24.21■■□□□ 1.47
RAB39A-201ENST00000320578 NINLQ9Y2I6 1382 aa24.2■■□□□ 1.46
RAB39A-201ENST00000320578 PNISRQ8TF01 805 aaKnown RBP24.19■■□□□ 1.46
RAB39A-201ENST00000320578 PRAM1Q96QH2 718 aa24.19■■□□□ 1.46
RAB39A-201ENST00000320578 TECPR2O15040 1411 aa24.18■■□□□ 1.46
RAB39A-201ENST00000320578 SCAF1Q9H7N4 1312 aaKnown RBP24.18■■□□□ 1.46
RAB39A-201ENST00000320578 ADAMTSL3P82987 1691 aa24.18■■□□□ 1.46
RAB39A-201ENST00000320578 THEMISQ8N1K5 641 aaPredicted RBP24.18■■□□□ 1.46
RAB39A-201ENST00000320578 POGKQ9P215 609 aa24.18■■□□□ 1.46
RAB39A-201ENST00000320578 CC2D1BQ5T0F9 858 aaKnown RBP24.16■■□□□ 1.46
RAB39A-201ENST00000320578 FAM9BQ8IZU0 186 aa24.16■■□□□ 1.46
RAB39A-201ENST00000320578 EID1Q9Y6B2 187 aa24.16■■□□□ 1.46
RAB39A-201ENST00000320578 FAM135BQ49AJ0 1406 aa24.15■■□□□ 1.46
RAB39A-201ENST00000320578 HNRNPUQ00839 825 aaKnown RBP eCLIP24.15■■□□□ 1.46
RAB39A-201ENST00000320578 ADAMTS13Q76LX8 1427 aa24.15■■□□□ 1.46
RAB39A-201ENST00000320578 METP08581 1390 aa24.14■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms