RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 PLEKHH1Q9ULM0 1364 aa6.06□□□□□ -1.44
PTPN13-201ENST00000316707 TPM2P07951 284 aa6.06□□□□□ -1.44
PTPN13-201ENST00000316707 AMER1Q5JTC6 1135 aaPredicted RBP6.06□□□□□ -1.44
PTPN13-201ENST00000316707 XRCC6P12956 609 aaKnown RBP eCLIP6.06□□□□□ -1.44
PTPN13-201ENST00000316707 PKNOX2Q96KN3 472 aa6.06□□□□□ -1.44
PTPN13-201ENST00000316707 GBP4Q96PP9 640 aa6.06□□□□□ -1.44
PTPN13-201ENST00000316707 NBPF1Q3BBV0 1214 aa6.05□□□□□ -1.44
PTPN13-201ENST00000316707 GOLGA6L22H0YM25 854 aa6.05□□□□□ -1.44
PTPN13-201ENST00000316707 RGL3Q3MIN7 710 aa6.05□□□□□ -1.44
PTPN13-201ENST00000316707 ANTXR1Q9H6X2 564 aa6.05□□□□□ -1.44
PTPN13-201ENST00000316707 ESPNB1AK53 854 aa6.05□□□□□ -1.44
PTPN13-201ENST00000316707 CHMP4BQ9H444 224 aaKnown RBP6.05□□□□□ -1.44
PTPN13-201ENST00000316707 USP19O94966 1318 aa6.05□□□□□ -1.44
PTPN13-201ENST00000316707 HSCBQ8IWL3 235 aa6.05□□□□□ -1.44
PTPN13-201ENST00000316707 APAF1O14727 1248 aa6.05□□□□□ -1.44
PTPN13-201ENST00000316707 MAP7D2Q96T17 732 aa6.05□□□□□ -1.44
PTPN13-201ENST00000316707 CFAP44Q96MT7 982 aa6.04□□□□□ -1.44
PTPN13-201ENST00000316707 TERF1P54274 439 aa6.04□□□□□ -1.44
PTPN13-201ENST00000316707 ATP10AO60312 1499 aa6.04□□□□□ -1.44
PTPN13-201ENST00000316707 TRAK2O60296 914 aa6.04□□□□□ -1.44
PTPN13-201ENST00000316707 TBC1D2Q9BYX2 928 aa6.04□□□□□ -1.44
PTPN13-201ENST00000316707 RRAGDQ9NQL2 400 aaPredicted RBP6.04□□□□□ -1.44
PTPN13-201ENST00000316707 DISP3Q9P2K9 1392 aa6.03□□□□□ -1.44
PTPN13-201ENST00000316707 WDR63Q8IWG1 891 aa6.03□□□□□ -1.44
PTPN13-201ENST00000316707 CFAP53Q96M91 514 aa6.03□□□□□ -1.44
PTPN13-201ENST00000316707 DISP1Q96F81 1524 aa6.03□□□□□ -1.44
PTPN13-201ENST00000316707 CCDC141Q6ZP82 1450 aa6.03□□□□□ -1.44
PTPN13-201ENST00000316707 CLASP1Q7Z460 1538 aa6.03□□□□□ -1.44
PTPN13-201ENST00000316707 IFT140Q96RY7 1462 aa6.03□□□□□ -1.44
PTPN13-201ENST00000316707 SKAP1Q86WV1 359 aa6.03□□□□□ -1.44
PTPN13-201ENST00000316707 COG6Q9Y2V7 657 aa6.03□□□□□ -1.44
PTPN13-201ENST00000316707 CHMP7Q8WUX9 453 aaPredicted RBP6.02□□□□□ -1.45
PTPN13-201ENST00000316707 C22orf23Q9BZE7 217 aa6.02□□□□□ -1.45
PTPN13-201ENST00000316707 POLR3AO14802 1390 aaPredicted RBP6.02□□□□□ -1.45
PTPN13-201ENST00000316707 ZNF608Q9ULD9 1512 aaPredicted RBP6.02□□□□□ -1.45
PTPN13-201ENST00000316707 VSIG10Q8N0Z9 540 aa6.02□□□□□ -1.45
PTPN13-201ENST00000316707 POLR1AO95602 1720 aaPredicted RBP6.02□□□□□ -1.45
PTPN13-201ENST00000316707 BCORL1Q5H9F3 1711 aa6.02□□□□□ -1.45
PTPN13-201ENST00000316707 MTERF4Q7Z6M4 381 aaKnown RBP6.02□□□□□ -1.45
PTPN13-201ENST00000316707 GRPEL1Q9HAV7 217 aa6.02□□□□□ -1.45
PTPN13-201ENST00000316707 ABCC2Q92887 1545 aa6.02□□□□□ -1.45
PTPN13-201ENST00000316707 CCDC27Q2M243 656 aa6.02□□□□□ -1.45
PTPN13-201ENST00000316707 IGHDP01880 384 aa6.01□□□□□ -1.45
PTPN13-201ENST00000316707 PDCL3Q9H2J4 239 aa6.01□□□□□ -1.45
PTPN13-201ENST00000316707 HS1BP3Q53T59 392 aa6.01□□□□□ -1.45
PTPN13-201ENST00000316707 ZKSCAN2Q63HK3 967 aa6.01□□□□□ -1.45
PTPN13-201ENST00000316707 KANK1Q14678 1352 aa6.01□□□□□ -1.45
PTPN13-201ENST00000316707 MAGI1Q96QZ7 1491 aaPredicted RBP6.01□□□□□ -1.45
PTPN13-201ENST00000316707 CEP170Q5SW79 1584 aa6.01□□□□□ -1.45
PTPN13-201ENST00000316707 BCAR3O75815 825 aa6.01□□□□□ -1.45
PTPN13-201ENST00000316707 SNX21Q969T3 373 aa6.01□□□□□ -1.45
PTPN13-201ENST00000316707 PDZRN3Q9UPQ7 1066 aa6.01□□□□□ -1.45
PTPN13-201ENST00000316707 KIF16BQ96L93 1317 aa6.01□□□□□ -1.45
PTPN13-201ENST00000316707 JPH4Q96JJ6 628 aa6.01□□□□□ -1.45
PTPN13-201ENST00000316707 ADAMTS12P58397 1594 aa6.01□□□□□ -1.45
PTPN13-201ENST00000316707 RUNDC1Q96C34 613 aa6□□□□□ -1.45
PTPN13-201ENST00000316707 KIAA0556O60303 1618 aa6□□□□□ -1.45
PTPN13-201ENST00000316707 RARSP54136 660 aaKnown RBP6□□□□□ -1.45
PTPN13-201ENST00000316707 PDZRN4Q6ZMN7 1036 aaPredicted RBP6□□□□□ -1.45
PTPN13-201ENST00000316707 WWC1Q8IX03 1113 aa6□□□□□ -1.45
PTPN13-201ENST00000316707 DDX19BQ9UMR2 479 aa6□□□□□ -1.45
PTPN13-201ENST00000316707 ABCC10Q5T3U5 1492 aa6□□□□□ -1.45
PTPN13-201ENST00000316707 SYNJ2O15056 1496 aa6□□□□□ -1.45
PTPN13-201ENST00000316707 SCAF11Q99590 1463 aaKnown RBP6□□□□□ -1.45
PTPN13-201ENST00000316707 IPO8O15397 1037 aaKnown RBP6□□□□□ -1.45
PTPN13-201ENST00000316707 CCDC173Q0VFZ6 552 aa6□□□□□ -1.45
PTPN13-201ENST00000316707 WDR7Q9Y4E6 1490 aa6□□□□□ -1.45
PTPN13-201ENST00000316707 HNRNPMP52272 730 aaKnown RBP eCLIP6□□□□□ -1.45
PTPN13-201ENST00000316707 A2MP01023 1474 aa6□□□□□ -1.45
PTPN13-201ENST00000316707 EIF2AK4Q9P2K8 1649 aaKnown RBP6□□□□□ -1.45
PTPN13-201ENST00000316707 FAM135AQ9P2D6 1515 aa6□□□□□ -1.45
PTPN13-201ENST00000316707 HDAC1Q13547 482 aaPredicted RBP6□□□□□ -1.45
PTPN13-201ENST00000316707 ZSCAN30Q86W11 494 aa6□□□□□ -1.45
PTPN13-201ENST00000316707 SMC5Q8IY18 1101 aa6□□□□□ -1.45
PTPN13-201ENST00000316707 EIF4G3O43432 1585 aaKnown RBP6□□□□□ -1.45
PTPN13-201ENST00000316707 FTSJ3Q8IY81 847 aaKnown RBP5.99□□□□□ -1.45
PTPN13-201ENST00000316707 PHF23Q9BUL5 403 aaPredicted RBP5.99□□□□□ -1.45
PTPN13-201ENST00000316707 IBTKQ9P2D0 1353 aaPredicted RBP5.99□□□□□ -1.45
PTPN13-201ENST00000316707 PRDM15P57071 1507 aaPredicted RBP5.99□□□□□ -1.45
PTPN13-201ENST00000316707 ASXL1Q8IXJ9 1541 aa5.99□□□□□ -1.45
PTPN13-201ENST00000316707 ITSN2Q9NZM3 1697 aa5.99□□□□□ -1.45
PTPN13-201ENST00000316707 RAPGEF6Q8TEU7 1601 aa5.99□□□□□ -1.45
PTPN13-201ENST00000316707 DZIP1LQ8IYY4 767 aaKnown RBP5.99□□□□□ -1.45
PTPN13-201ENST00000316707 PANK1Q8TE04 598 aa5.99□□□□□ -1.45
PTPN13-201ENST00000316707 GRIN2AQ12879 1464 aa5.99□□□□□ -1.45
PTPN13-201ENST00000316707 SBNO2Q9Y2G9 1366 aa5.99□□□□□ -1.45
PTPN13-201ENST00000316707 MVPQ14764 893 aaKnown RBP5.99□□□□□ -1.45
PTPN13-201ENST00000316707 ZNF428Q96B54 188 aa5.99□□□□□ -1.45
PTPN13-201ENST00000316707 ZMYND15Q9H091 742 aa5.99□□□□□ -1.45
PTPN13-201ENST00000316707 PLA2R1Q13018 1463 aa5.99□□□□□ -1.45
PTPN13-201ENST00000316707 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.99□□□□□ -1.45
PTPN13-201ENST00000316707 RBM25P49756 843 aaKnown RBP5.98□□□□□ -1.45
PTPN13-201ENST00000316707 LAMC1P11047 1609 aa5.98□□□□□ -1.45
PTPN13-201ENST00000316707 ARHGEF5Q12774 1597 aa5.98□□□□□ -1.45
PTPN13-201ENST00000316707 MCM5P33992 734 aa5.98□□□□□ -1.45
PTPN13-201ENST00000316707 MRC2Q9UBG0 1479 aa5.98□□□□□ -1.45
PTPN13-201ENST00000316707 PUS7Q96PZ0 661 aaKnown RBP5.98□□□□□ -1.45
PTPN13-201ENST00000316707 MSNP26038 577 aaKnown RBP5.98□□□□□ -1.45
PTPN13-201ENST00000316707 MORC1Q86VD1 984 aa5.98□□□□□ -1.45
PTPN13-201ENST00000316707 GZF1Q9H116 711 aaPredicted RBP5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms