RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 SAFBQ15424 915 aaKnown RBP eCLIP18.79■□□□□ 0.6
HCFC1-201ENST00000310441 KIF7Q2M1P5 1343 aa18.78■□□□□ 0.6
HCFC1-201ENST00000310441 NOL8Q76FK4 1167 aaKnown RBP18.78■□□□□ 0.6
HCFC1-201ENST00000310441 NUCB2P80303 420 aa18.78■□□□□ 0.6
HCFC1-201ENST00000310441 CARMIL1Q5VZK9 1371 aa18.78■□□□□ 0.6
HCFC1-201ENST00000310441 CUX2O14529 1486 aa18.78■□□□□ 0.6
HCFC1-201ENST00000310441 MNS1Q8NEH6 495 aa18.78■□□□□ 0.6
HCFC1-201ENST00000310441 E9PSI1 815 aa18.78■□□□□ 0.6
HCFC1-201ENST00000310441 BRMS1Q9HCU9 246 aa18.78■□□□□ 0.6
HCFC1-201ENST00000310441 CAGE1Q8TC20 777 aa18.77■□□□□ 0.6
HCFC1-201ENST00000310441 MYBBP1AQ9BQG0 1328 aaKnown RBP18.77■□□□□ 0.6
HCFC1-201ENST00000310441 LETM1O95202 739 aaPredicted RBP18.77■□□□□ 0.6
HCFC1-201ENST00000310441 APPP05067 770 aa18.77■□□□□ 0.59
HCFC1-201ENST00000310441 RILPL2Q969X0 211 aa18.77■□□□□ 0.59
HCFC1-201ENST00000310441 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.76■□□□□ 0.596e-7■■■■■ 113.5
HCFC1-201ENST00000310441 H0YHG0 523 aa18.76■□□□□ 0.59
HCFC1-201ENST00000310441 C1orf141Q5JVX7 400 aa18.75■□□□□ 0.59
HCFC1-201ENST00000310441 TXLNBQ8N3L3 684 aa18.75■□□□□ 0.59
HCFC1-201ENST00000310441 OLFM4Q6UX06 510 aa18.75■□□□□ 0.59
HCFC1-201ENST00000310441 ZKSCAN2Q63HK3 967 aa18.74■□□□□ 0.59
HCFC1-201ENST00000310441 DDX19BQ9UMR2 479 aa18.74■□□□□ 0.59
HCFC1-201ENST00000310441 FAM43AQ8N2R8 423 aa18.74■□□□□ 0.59
HCFC1-201ENST00000310441 XBP1P17861 261 aa18.74■□□□□ 0.59
HCFC1-201ENST00000310441 NAP1L1P55209 391 aaKnown RBP18.74■□□□□ 0.59
HCFC1-201ENST00000310441 CCDC73Q6ZRK6 1079 aa18.73■□□□□ 0.59
HCFC1-201ENST00000310441 BICD2Q8TD16 824 aa18.73■□□□□ 0.59
HCFC1-201ENST00000310441 R3HCC1Q9Y3T6 440 aaKnown RBP18.73■□□□□ 0.59
HCFC1-201ENST00000310441 GOLGA6L7A0A1B0GV03 622 aa18.73■□□□□ 0.59
HCFC1-201ENST00000310441 CCDC39Q9UFE4 941 aa18.72■□□□□ 0.59
HCFC1-201ENST00000310441 NINLQ9Y2I6 1382 aa18.72■□□□□ 0.59
HCFC1-201ENST00000310441 ANKRD45Q5TZF3 282 aa18.72■□□□□ 0.59
HCFC1-201ENST00000310441 VPS37DQ86XT2 251 aa18.72■□□□□ 0.59
HCFC1-201ENST00000310441 VSIG10Q8N0Z9 540 aa18.72■□□□□ 0.59
HCFC1-201ENST00000310441 ZBED9Q6R2W3 1325 aa18.72■□□□□ 0.59
HCFC1-201ENST00000310441 ANKRD18AQ8IVF6 992 aa18.72■□□□□ 0.59
HCFC1-201ENST00000310441 NGDNQ8NEJ9 315 aaKnown RBP18.71■□□□□ 0.59
HCFC1-201ENST00000310441 C9orf78Q9NZ63 289 aaPredicted RBP18.71■□□□□ 0.59
HCFC1-201ENST00000310441 FOXD4L1Q9NU39 408 aa18.71■□□□□ 0.59
HCFC1-201ENST00000310441 RAB3GAP2Q9H2M9 1393 aa18.71■□□□□ 0.59
HCFC1-201ENST00000310441 ERLIN2O94905 339 aa18.71■□□□□ 0.59
HCFC1-201ENST00000310441 IFT57Q9NWB7 429 aa18.7■□□□□ 0.58
HCFC1-201ENST00000310441 CCDC144AA2RUR9 1427 aa18.7■□□□□ 0.58
HCFC1-201ENST00000310441 HSP90AB2PQ58FF8 381 aa18.7■□□□□ 0.58
HCFC1-201ENST00000310441 DDX58O95786 925 aaKnown RBP18.7■□□□□ 0.58
HCFC1-201ENST00000310441 ERC2O15083 957 aa18.69■□□□□ 0.58
HCFC1-201ENST00000310441 LUC7LQ9NQ29 371 aaKnown RBP18.69■□□□□ 0.58
HCFC1-201ENST00000310441 HSP90AB4PQ58FF6 505 aa18.69■□□□□ 0.58
HCFC1-201ENST00000310441 INTS3Q68E01 1043 aaKnown RBP18.69■□□□□ 0.58
HCFC1-201ENST00000310441 MPHOSPH9Q99550 1183 aa18.69■□□□□ 0.58
HCFC1-201ENST00000310441 WASHC2AQ641Q2 1341 aa18.69■□□□□ 0.58
HCFC1-201ENST00000310441 PIP4K2AP48426 406 aaPredicted RBP18.68■□□□□ 0.58
HCFC1-201ENST00000310441 OFD1O75665 1012 aa18.68■□□□□ 0.58
HCFC1-201ENST00000310441 SMARCE1Q969G3 411 aa18.68■□□□□ 0.58
HCFC1-201ENST00000310441 GOLGA6L10A6NI86 522 aa18.68■□□□□ 0.58
HCFC1-201ENST00000310441 INCENPQ9NQS7 918 aa18.68■□□□□ 0.58
HCFC1-201ENST00000310441 CCDC9Q9Y3X0 531 aaKnown RBP18.68■□□□□ 0.58
HCFC1-201ENST00000310441 HMGN5P82970 282 aaKnown RBP18.67■□□□□ 0.58
HCFC1-201ENST00000310441 FOXD4L5Q5VV16 416 aaPredicted RBP18.67■□□□□ 0.58
HCFC1-201ENST00000310441 LEKR1Q6ZMV7 388 aa18.67■□□□□ 0.58
HCFC1-201ENST00000310441 TTC5Q8N0Z6 440 aa18.67■□□□□ 0.58
HCFC1-201ENST00000310441 FOXD4L4Q8WXT5 416 aaPredicted RBP18.67■□□□□ 0.58
HCFC1-201ENST00000310441 FAM13BQ9NYF5 915 aa18.67■□□□□ 0.58
HCFC1-201ENST00000310441 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.67■□□□□ 0.58
HCFC1-201ENST00000310441 ANO2Q9NQ90 1003 aa18.67■□□□□ 0.58
HCFC1-201ENST00000310441 CHMP5Q9NZZ3 219 aa18.67■□□□□ 0.58
HCFC1-201ENST00000310441 IFIT2P09913 472 aaKnown RBP18.67■□□□□ 0.58
HCFC1-201ENST00000310441 MLECQ14165 292 aa18.67■□□□□ 0.58
HCFC1-201ENST00000310441 GGT6Q6P531 493 aa18.67■□□□□ 0.58
HCFC1-201ENST00000310441 EFCAB2Q5VUJ9 269 aa18.66■□□□□ 0.58
HCFC1-201ENST00000310441 NFXL1Q6ZNB6 911 aa18.66■□□□□ 0.58
HCFC1-201ENST00000310441 SMC3Q9UQE7 1217 aa18.65■□□□□ 0.58
HCFC1-201ENST00000310441 EVC2Q86UK5 1308 aa18.65■□□□□ 0.58
HCFC1-201ENST00000310441 FANCIQ9NVI1 1328 aa18.64■□□□□ 0.58
HCFC1-201ENST00000310441 PDCP20941 246 aa18.64■□□□□ 0.57
HCFC1-201ENST00000310441 PSMA5P28066 241 aa18.64■□□□□ 0.57
HCFC1-201ENST00000310441 CLUAP1Q96AJ1 413 aa18.64■□□□□ 0.57
HCFC1-201ENST00000310441 PDE4AP27815 886 aa18.64■□□□□ 0.57
HCFC1-201ENST00000310441 WWC2Q6AWC2 1192 aa18.63■□□□□ 0.57
HCFC1-201ENST00000310441 IQCEQ6IPM2 695 aa18.63■□□□□ 0.57
HCFC1-201ENST00000310441 TEFQ10587 303 aa18.62■□□□□ 0.57
HCFC1-201ENST00000310441 RALYLQ86SE5 291 aaKnown RBP18.62■□□□□ 0.57
HCFC1-201ENST00000310441 COG3Q96JB2 828 aa18.62■□□□□ 0.57
HCFC1-201ENST00000310441 DHX16O60231 1041 aaKnown RBP18.62■□□□□ 0.57
HCFC1-201ENST00000310441 RABEP1Q15276 862 aa18.62■□□□□ 0.57
HCFC1-201ENST00000310441 TXLNAP40222 546 aa18.62■□□□□ 0.57
HCFC1-201ENST00000310441 CAVIN1Q6NZI2 390 aaKnown RBP18.61■□□□□ 0.57
HCFC1-201ENST00000310441 NASPP49321 788 aaPredicted RBP18.61■□□□□ 0.57
HCFC1-201ENST00000310441 CUX1P39880 1505 aa18.61■□□□□ 0.57
HCFC1-201ENST00000310441 USP8P40818 1118 aa18.61■□□□□ 0.57
HCFC1-201ENST00000310441 RRP1P56182 461 aaKnown RBP18.61■□□□□ 0.57
HCFC1-201ENST00000310441 CWC22Q9HCG8 908 aaKnown RBP18.6■□□□□ 0.57
HCFC1-201ENST00000310441 SART3Q15020 963 aaKnown RBP18.6■□□□□ 0.57
HCFC1-201ENST00000310441 TRHP20396 242 aaPredicted RBP18.6■□□□□ 0.57
HCFC1-201ENST00000310441 API5Q9BZZ5 524 aaKnown RBP18.6■□□□□ 0.57
HCFC1-201ENST00000310441 TSHZ2Q9NRE2 1034 aa18.6■□□□□ 0.57
HCFC1-201ENST00000310441 MCM2P49736 904 aa18.6■□□□□ 0.57
HCFC1-201ENST00000310441 MBD3O95983 291 aa18.6■□□□□ 0.57
HCFC1-201ENST00000310441 EZRP15311 586 aaKnown RBP18.59■□□□□ 0.57
HCFC1-201ENST00000310441 G3BP1Q13283 466 aaKnown RBP eCLIP18.59■□□□□ 0.572e-6■■□□□ 12.5
HCFC1-201ENST00000310441 MIA2Q96PC5 1412 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms