RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 THEMISQ8N1K5 641 aaPredicted RBP13.74□□□□□ -0.21
RFX3-201ENST00000302303 IFT172Q9UG01 1749 aa13.74□□□□□ -0.21
RFX3-201ENST00000302303 RPGRIP1LQ68CZ1 1315 aa13.74□□□□□ -0.21
RFX3-201ENST00000302303 PPP1R15AO75807 674 aaPredicted RBP13.74□□□□□ -0.21
RFX3-201ENST00000302303 DCAF11Q8TEB1 546 aa13.74□□□□□ -0.21
RFX3-201ENST00000302303 ADGRF5Q8IZF2 1346 aa13.73□□□□□ -0.21
RFX3-201ENST00000302303 NBPF8Q3BBV2 869 aa13.73□□□□□ -0.21
RFX3-201ENST00000302303 STAG3Q9UJ98 1225 aa13.73□□□□□ -0.21
RFX3-201ENST00000302303 RIMS2Q9UQ26 1411 aa13.73□□□□□ -0.21
RFX3-201ENST00000302303 NRXN1Q9ULB1 1477 aa13.72□□□□□ -0.21
RFX3-201ENST00000302303 PPLO60437 1756 aa13.72□□□□□ -0.21
RFX3-201ENST00000302303 TONSLQ96HA7 1378 aa13.72□□□□□ -0.21
RFX3-201ENST00000302303 ZNF326Q5BKZ1 582 aaKnown RBP13.72□□□□□ -0.21
RFX3-201ENST00000302303 NUTM2DQ5VT03 806 aaPredicted RBP13.72□□□□□ -0.21
RFX3-201ENST00000302303 HSPA2P54652 639 aa13.71□□□□□ -0.21
RFX3-201ENST00000302303 KDM2AQ9Y2K7 1162 aa13.7□□□□□ -0.22
RFX3-201ENST00000302303 MYOM2P54296 1465 aa13.7□□□□□ -0.22
RFX3-201ENST00000302303 TXNDC2Q86VQ3 553 aa13.69□□□□□ -0.22
RFX3-201ENST00000302303 STAC3Q96MF2 364 aa13.69□□□□□ -0.22
RFX3-201ENST00000302303 PRAG1Q86YV5 1406 aa13.68□□□□□ -0.22
RFX3-201ENST00000302303 VGFO15240 615 aaPredicted RBP13.68□□□□□ -0.22
RFX3-201ENST00000302303 PIK3C2GO75747 1445 aa13.67□□□□□ -0.22
RFX3-201ENST00000302303 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.66□□□□□ -0.22
RFX3-201ENST00000302303 NCKAP5LQ9HCH0 1330 aa13.66□□□□□ -0.22
RFX3-201ENST00000302303 SCAF11Q99590 1463 aaKnown RBP13.66□□□□□ -0.22
RFX3-201ENST00000302303 NRXN3Q9Y4C0 1643 aa13.66□□□□□ -0.22
RFX3-201ENST00000302303 ANKLE2Q86XL3 938 aa13.65□□□□□ -0.22
RFX3-201ENST00000302303 PLEKHG1Q9ULL1 1385 aa13.65□□□□□ -0.22
RFX3-201ENST00000302303 MED14O60244 1454 aa13.65□□□□□ -0.22
RFX3-201ENST00000302303 ADAMTS13Q76LX8 1427 aa13.64□□□□□ -0.23
RFX3-201ENST00000302303 STRCQ7RTU9 1775 aa13.64□□□□□ -0.23
RFX3-201ENST00000302303 C14orf93Q9H972 538 aaKnown RBP13.64□□□□□ -0.23
RFX3-201ENST00000302303 HDGFP51858 240 aaKnown RBP13.64□□□□□ -0.23
RFX3-201ENST00000302303 NBPF1Q3BBV0 1214 aa13.64□□□□□ -0.23
RFX3-201ENST00000302303 CFAP70Q5T0N1 1121 aa13.64□□□□□ -0.23
RFX3-201ENST00000302303 SETBP1Q9Y6X0 1596 aa13.63□□□□□ -0.23
RFX3-201ENST00000302303 EID1Q9Y6B2 187 aa13.63□□□□□ -0.23
RFX3-201ENST00000302303 ZEB1P37275 1124 aaPredicted RBP13.62□□□□□ -0.23
RFX3-201ENST00000302303 SETD1AO15047 1707 aaKnown RBP13.61□□□□□ -0.23
RFX3-201ENST00000302303 ALKQ9UM73 1620 aa13.61□□□□□ -0.23
RFX3-201ENST00000302303 ASXL1Q8IXJ9 1541 aa13.61□□□□□ -0.23
RFX3-201ENST00000302303 TRPM1Q7Z4N2 1603 aa13.61□□□□□ -0.23
RFX3-201ENST00000302303 IQGAP1P46940 1657 aa13.6□□□□□ -0.23
RFX3-201ENST00000302303 NPHP4O75161 1426 aaPredicted RBP13.6□□□□□ -0.23
RFX3-201ENST00000302303 METP08581 1390 aa13.6□□□□□ -0.23
RFX3-201ENST00000302303 ADGRB1O14514 1584 aa13.6□□□□□ -0.23
RFX3-201ENST00000302303 POLR1AO95602 1720 aaPredicted RBP13.6□□□□□ -0.23
RFX3-201ENST00000302303 SLC26A8Q96RN1 970 aa13.59□□□□□ -0.23
RFX3-201ENST00000302303 RALGAPBQ86X10 1494 aa13.59□□□□□ -0.23
RFX3-201ENST00000302303 GPRASP1Q5JY77 1395 aa13.59□□□□□ -0.23
RFX3-201ENST00000302303 TBX22Q9Y458 520 aa13.59□□□□□ -0.23
RFX3-201ENST00000302303 KIAA1210Q9ULL0 1709 aa13.58□□□□□ -0.24
RFX3-201ENST00000302303 TMEM132EQ6IEE7 984 aa13.58□□□□□ -0.24
RFX3-201ENST00000302303 PTPRUQ92729 1446 aa13.57□□□□□ -0.24
RFX3-201ENST00000302303 LAMC1P11047 1609 aa13.54□□□□□ -0.24
RFX3-201ENST00000302303 DIP2AQ14689 1571 aa13.54□□□□□ -0.24
RFX3-201ENST00000302303 ROCK2O75116 1388 aaKnown RBP13.53□□□□□ -0.24
RFX3-201ENST00000302303 BCANQ96GW7 911 aa13.52□□□□□ -0.25
RFX3-201ENST00000302303 YTHDC2Q9H6S0 1430 aaKnown RBP13.52□□□□□ -0.25
RFX3-201ENST00000302303 LRPPRCP42704 1394 aaKnown RBP13.51□□□□□ -0.25
RFX3-201ENST00000302303 ABCC11Q96J66 1382 aa13.51□□□□□ -0.25
RFX3-201ENST00000302303 PIK3R4Q99570 1358 aa13.51□□□□□ -0.25
RFX3-201ENST00000302303 CARD11Q9BXL7 1154 aa13.51□□□□□ -0.25
RFX3-201ENST00000302303 TECPR2O15040 1411 aa13.5□□□□□ -0.25
RFX3-201ENST00000302303 AMOTL2Q9Y2J4 779 aa13.49□□□□□ -0.25
RFX3-201ENST00000302303 CHD2O14647 1828 aaKnown RBP13.49□□□□□ -0.25
RFX3-201ENST00000302303 STRCP1A6NGW2 1772 aa13.49□□□□□ -0.25
RFX3-201ENST00000302303 STK26Q9P289 416 aa13.49□□□□□ -0.25
RFX3-201ENST00000302303 TRAK1Q9UPV9 953 aa13.49□□□□□ -0.25
RFX3-201ENST00000302303 XRN1Q8IZH2 1706 aaKnown RBP13.48□□□□□ -0.25
RFX3-201ENST00000302303 ROBO2Q9HCK4 1378 aa13.48□□□□□ -0.25
RFX3-201ENST00000302303 KCNA6P17658 529 aa13.48□□□□□ -0.25
RFX3-201ENST00000302303 SIRT1Q96EB6 747 aa13.47□□□□□ -0.25
RFX3-201ENST00000302303 DMRT2Q9Y5R5 561 aa13.47□□□□□ -0.25
RFX3-201ENST00000302303 NWD1Q149M9 1564 aa13.47□□□□□ -0.25
RFX3-201ENST00000302303 PLEKHH1Q9ULM0 1364 aa13.47□□□□□ -0.25
RFX3-201ENST00000302303 DLC1Q96QB1 1528 aa13.46□□□□□ -0.25
RFX3-201ENST00000302303 WAPLQ7Z5K2 1190 aa13.46□□□□□ -0.25
RFX3-201ENST00000302303 ZNF335Q9H4Z2 1342 aaPredicted RBP13.46□□□□□ -0.25
RFX3-201ENST00000302303 USP47Q96K76 1375 aa13.46□□□□□ -0.25
RFX3-201ENST00000302303 CPS1P31327 1500 aa13.46□□□□□ -0.26
RFX3-201ENST00000302303 KNDC1Q76NI1 1749 aa13.45□□□□□ -0.26
RFX3-201ENST00000302303 HSPA5P11021 654 aaKnown RBP13.45□□□□□ -0.26
RFX3-201ENST00000302303 TESK2Q96S53 571 aa13.45□□□□□ -0.26
RFX3-201ENST00000302303 ARHGEF28Q8N1W1 1705 aaKnown RBP13.45□□□□□ -0.26
RFX3-201ENST00000302303 ST20-MTHFSA0A0A6YYL1 179 aa13.44□□□□□ -0.26
RFX3-201ENST00000302303 HIRIP3Q9BW71 556 aaPredicted RBP13.44□□□□□ -0.26
RFX3-201ENST00000302303 FAM135BQ49AJ0 1406 aa13.44□□□□□ -0.26
RFX3-201ENST00000302303 PRAM1Q96QH2 718 aa13.44□□□□□ -0.26
RFX3-201ENST00000302303 PTCH1Q13635 1447 aa13.44□□□□□ -0.26
RFX3-201ENST00000302303 EIF4G2P78344 907 aaKnown RBP eCLIP13.43□□□□□ -0.26
RFX3-201ENST00000302303 RBM33Q96EV2 1170 aaKnown RBP13.42□□□□□ -0.26
RFX3-201ENST00000302303 LTBP4Q8N2S1 1624 aa13.42□□□□□ -0.26
RFX3-201ENST00000302303 C11orf95C9JLR9 678 aaPredicted RBP13.41□□□□□ -0.26
RFX3-201ENST00000302303 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.41□□□□□ -0.26
RFX3-201ENST00000302303 NKTRP30414 1462 aaKnown RBP13.4□□□□□ -0.26
RFX3-201ENST00000302303 CENPJQ9HC77 1338 aaPredicted RBP13.4□□□□□ -0.27
RFX3-201ENST00000302303 SBNO2Q9Y2G9 1366 aa13.39□□□□□ -0.27
RFX3-201ENST00000302303 LRRC7Q96NW7 1537 aa13.39□□□□□ -0.27
RFX3-201ENST00000302303 SAFB2Q14151 953 aaKnown RBP eCLIP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms