RNA–Protein interactions for RNA: ENST00000298396.6

SSX3-201, Transcript of SSX family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSX3, Length 1,232 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3-201ENST00000298396 PCDHB13Q9Y5F0 798 aa9□□□□□ -0.97
SSX3-201ENST00000298396 DHX29Q7Z478 1369 aaKnown RBP8.99□□□□□ -0.97
SSX3-201ENST00000298396 UNC13BO14795 1591 aa8.99□□□□□ -0.97
SSX3-201ENST00000298396 NAIPQ13075 1403 aa8.99□□□□□ -0.97
SSX3-201ENST00000298396 HAX1O00165 279 aa8.99□□□□□ -0.97
SSX3-201ENST00000298396 TSPY4P0CV99 314 aa8.99□□□□□ -0.97
SSX3-201ENST00000298396 TSPY10P0CW01 314 aa8.99□□□□□ -0.97
SSX3-201ENST00000298396 PDAP1Q13442 181 aaKnown RBP8.99□□□□□ -0.97
SSX3-201ENST00000298396 BBXQ8WY36 941 aaPredicted RBP8.99□□□□□ -0.97
SSX3-201ENST00000298396 PCDHB8Q9UN66 801 aa8.99□□□□□ -0.97
SSX3-201ENST00000298396 CLTCQ00610 1675 aaKnown RBP8.99□□□□□ -0.97
SSX3-201ENST00000298396 RIMS1Q86UR5 1692 aaKnown RBP8.99□□□□□ -0.97
SSX3-201ENST00000298396 ANKRD30AQ9BXX3 1397 aa8.99□□□□□ -0.97
SSX3-201ENST00000298396 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.98□□□□□ -0.97
SSX3-201ENST00000298396 ZFP91Q96JP5 570 aaPredicted RBP8.98□□□□□ -0.97
SSX3-201ENST00000298396 RRP7BPQ9NSQ0 103 aa8.98□□□□□ -0.97
SSX3-201ENST00000298396 PRDM15P57071 1507 aaPredicted RBP8.98□□□□□ -0.97
SSX3-201ENST00000298396 VWDEQ8N2E2 1590 aa8.98□□□□□ -0.97
SSX3-201ENST00000298396 HFM1A2PYH4 1435 aa8.97□□□□□ -0.97
SSX3-201ENST00000298396 ERBINQ96RT1 1412 aa8.97□□□□□ -0.97
SSX3-201ENST00000298396 MYT1LQ9UL68 1186 aa8.97□□□□□ -0.97
SSX3-201ENST00000298396 MROH2AA6NES4 1674 aa8.97□□□□□ -0.97
SSX3-201ENST00000298396 CHGAP10645 457 aaKnown RBP8.96□□□□□ -0.98
SSX3-201ENST00000298396 MS4A3Q96HJ5 214 aa8.96□□□□□ -0.98
SSX3-201ENST00000298396 C3P01024 1663 aa8.96□□□□□ -0.98
SSX3-201ENST00000298396 ZC3H13Q5T200 1668 aaKnown RBP8.96□□□□□ -0.98
SSX3-201ENST00000298396 ANKRD50Q9ULJ7 1429 aa8.96□□□□□ -0.98
SSX3-201ENST00000298396 CAMSAP1Q5T5Y3 1602 aa8.95□□□□□ -0.98
SSX3-201ENST00000298396 IQGAP3Q86VI3 1631 aa8.95□□□□□ -0.98
SSX3-201ENST00000298396 ABCC3O15438 1527 aa8.95□□□□□ -0.98
SSX3-201ENST00000298396 KDM5DQ9BY66 1539 aa8.95□□□□□ -0.98
SSX3-201ENST00000298396 PSEN1P49768 467 aa8.94□□□□□ -0.98
SSX3-201ENST00000298396 KDM4FA0A1W2PPD8 638 aa8.93□□□□□ -0.98
SSX3-201ENST00000298396 BCL11BQ9C0K0 894 aaPredicted RBP8.93□□□□□ -0.98
SSX3-201ENST00000298396 E9PCH4 1651 aa8.93□□□□□ -0.98
SSX3-201ENST00000298396 TET3O43151 1660 aa8.93□□□□□ -0.98
SSX3-201ENST00000298396 FAM135AQ9P2D6 1515 aa8.92□□□□□ -0.98
SSX3-201ENST00000298396 STK25O00506 426 aa8.92□□□□□ -0.98
SSX3-201ENST00000298396 KIF3BO15066 747 aa8.92□□□□□ -0.98
SSX3-201ENST00000298396 PLCB2Q00722 1185 aa8.92□□□□□ -0.98
SSX3-201ENST00000298396 PREX1Q8TCU6 1659 aa8.91□□□□□ -0.98
SSX3-201ENST00000298396 LMTK2Q8IWU2 1503 aa8.91□□□□□ -0.98
SSX3-201ENST00000298396 ARID4BQ4LE39 1312 aaPredicted RBP8.91□□□□□ -0.98
SSX3-201ENST00000298396 MLECQ14165 292 aa8.91□□□□□ -0.98
SSX3-201ENST00000298396 NKX1-1Q15270 411 aaPredicted RBP8.91□□□□□ -0.98
SSX3-201ENST00000298396 EFCAB6Q5THR3 1501 aa8.9□□□□□ -0.98
SSX3-201ENST00000298396 PZPP20742 1482 aa8.9□□□□□ -0.98
SSX3-201ENST00000298396 SETD5Q9C0A6 1442 aa8.9□□□□□ -0.98
SSX3-201ENST00000298396 TIE1P35590 1138 aa8.9□□□□□ -0.98
SSX3-201ENST00000298396 TRIM26Q12899 539 aaPredicted RBP8.9□□□□□ -0.98
SSX3-201ENST00000298396 TRPC6Q9Y210 931 aa8.9□□□□□ -0.98
SSX3-201ENST00000298396 SETD1BQ9UPS6 1966 aaKnown RBP8.9□□□□□ -0.99
SSX3-201ENST00000298396 RAB3GAP2Q9H2M9 1393 aa8.89□□□□□ -0.99
SSX3-201ENST00000298396 GALR2O43603 387 aaPredicted RBP8.89□□□□□ -0.99
SSX3-201ENST00000298396 GGT6Q6P531 493 aa8.89□□□□□ -0.99
SSX3-201ENST00000298396 MYO5BQ9ULV0 1848 aa8.89□□□□□ -0.99
SSX3-201ENST00000298396 PTPRMP28827 1452 aa8.89□□□□□ -0.99
SSX3-201ENST00000298396 STK24Q9Y6E0 443 aa8.88□□□□□ -0.99
SSX3-201ENST00000298396 SPHKAPQ2M3C7 1700 aa8.88□□□□□ -0.99
SSX3-201ENST00000298396 SYNMO15061 1565 aa8.87□□□□□ -0.99
SSX3-201ENST00000298396 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.87□□□□□ -0.99
SSX3-201ENST00000298396 CNTLNQ9NXG0 1405 aa8.87□□□□□ -0.99
SSX3-201ENST00000298396 NPATQ14207 1427 aa8.86□□□□□ -0.99
SSX3-201ENST00000298396 SPATA31D1Q6ZQQ2 1576 aa8.86□□□□□ -0.99
SSX3-201ENST00000298396 ZNF142P52746 1687 aaPredicted RBP8.85□□□□□ -0.99
SSX3-201ENST00000298396 PIK3C2BO00750 1634 aa8.85□□□□□ -0.99
SSX3-201ENST00000298396 MYO3AQ8NEV4 1616 aa8.85□□□□□ -0.99
SSX3-201ENST00000298396 GABBR2O75899 941 aa8.85□□□□□ -0.99
SSX3-201ENST00000298396 BMP2KQ9NSY1 1161 aaPredicted RBP8.85□□□□□ -0.99
SSX3-201ENST00000298396 ARHGAP31Q2M1Z3 1444 aa8.85□□□□□ -0.99
SSX3-201ENST00000298396 NUP155O75694 1391 aa8.85□□□□□ -0.99
SSX3-201ENST00000298396 ZMYM3Q14202 1370 aa8.85□□□□□ -0.99
SSX3-201ENST00000298396 ERVK-7P63135 1459 aa8.84□□□□□ -0.99
SSX3-201ENST00000298396 CEBPAP49715 358 aaPredicted RBP8.84□□□□□ -0.99
SSX3-201ENST00000298396 WASHC2CQ9Y4E1 1318 aa8.83□□□□□ -1
SSX3-201ENST00000298396 UGGT1Q9NYU2 1555 aa8.83□□□□□ -1
SSX3-201ENST00000298396 TTLL13PA6NNM8 815 aa8.83□□□□□ -1
SSX3-201ENST00000298396 GTPBP6O43824 516 aaPredicted RBP8.83□□□□□ -1
SSX3-201ENST00000298396 CLTCL1P53675 1640 aa8.83□□□□□ -1
SSX3-201ENST00000298396 PLA2R1Q13018 1463 aa8.83□□□□□ -1
SSX3-201ENST00000298396 SLC24A1O60721 1099 aa8.82□□□□□ -1
SSX3-201ENST00000298396 ASTLQ6HA08 431 aaPredicted RBP8.82□□□□□ -1
SSX3-201ENST00000298396 ILDR1Q86SU0 546 aaPredicted RBP8.82□□□□□ -1
SSX3-201ENST00000298396 TMEM106CQ9BVX2 250 aa8.82□□□□□ -1
SSX3-201ENST00000298396 PCGF6Q9BYE7 350 aa8.82□□□□□ -1
SSX3-201ENST00000298396 KANK1Q14678 1352 aa8.82□□□□□ -1
SSX3-201ENST00000298396 UBR1Q8IWV7 1749 aa8.82□□□□□ -1
SSX3-201ENST00000298396 RPRD2Q5VT52 1461 aaKnown RBP8.82□□□□□ -1
SSX3-201ENST00000298396 NOS1P29475 1434 aa8.81□□□□□ -1
SSX3-201ENST00000298396 FBXO31Q5XUX0 539 aaPredicted RBP8.81□□□□□ -1
SSX3-201ENST00000298396 SPRYD3Q8NCJ5 442 aa8.81□□□□□ -1
SSX3-201ENST00000298396 KIF1BO60333 1816 aa8.81□□□□□ -1
SSX3-201ENST00000298396 PTPRTO14522 1441 aa8.8□□□□□ -1
SSX3-201ENST00000298396 TRPM2O94759 1503 aa8.8□□□□□ -1
SSX3-201ENST00000298396 HRCP23327 699 aa8.8□□□□□ -1
SSX3-201ENST00000298396 FBXO22Q8NEZ5 403 aa8.8□□□□□ -1
SSX3-201ENST00000298396 MFRPQ9BY79 579 aa8.8□□□□□ -1
SSX3-201ENST00000298396 KDM5AP29375 1690 aaKnown RBP8.79□□□□□ -1
SSX3-201ENST00000298396 CEP170BQ9Y4F5 1589 aaPredicted RBP8.79□□□□□ -1
SSX3-201ENST00000298396 SOX12O15370 315 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms