RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 KIAA1210Q9ULL0 1709 aa19.81■□□□□ 0.76
C9orf3-202ENST00000297979 PPP6R1Q9UPN7 881 aa19.79■□□□□ 0.76
C9orf3-202ENST00000297979 PREX1Q8TCU6 1659 aa19.78■□□□□ 0.76
C9orf3-202ENST00000297979 CCER2I3L3R5 266 aa19.78■□□□□ 0.76
C9orf3-202ENST00000297979 IQGAP1P46940 1657 aa19.77■□□□□ 0.76
C9orf3-202ENST00000297979 CHGAP10645 457 aaKnown RBP19.76■□□□□ 0.75
C9orf3-202ENST00000297979 PPLO60437 1756 aa19.76■□□□□ 0.75
C9orf3-202ENST00000297979 NRXN1Q9ULB1 1477 aa19.76■□□□□ 0.75
C9orf3-202ENST00000297979 CLTCQ00610 1675 aaKnown RBP19.74■□□□□ 0.75
C9orf3-202ENST00000297979 POLR3GLQ9BT43 218 aa19.74■□□□□ 0.75
C9orf3-202ENST00000297979 ADGRF5Q8IZF2 1346 aa19.73■□□□□ 0.75
C9orf3-202ENST00000297979 RPGRIP1LQ68CZ1 1315 aa19.73■□□□□ 0.75
C9orf3-202ENST00000297979 SCAF11Q99590 1463 aaKnown RBP19.72■□□□□ 0.75
C9orf3-202ENST00000297979 SLC52A1Q9NWF4 448 aa19.72■□□□□ 0.75
C9orf3-202ENST00000297979 ERVK-7P63135 1459 aa19.71■□□□□ 0.75
C9orf3-202ENST00000297979 TESK2Q96S53 571 aa19.7■□□□□ 0.74
C9orf3-202ENST00000297979 IDI1Q13907 227 aa19.68■□□□□ 0.74
C9orf3-202ENST00000297979 PIK3C2GO75747 1445 aa19.68■□□□□ 0.74
C9orf3-202ENST00000297979 NEXMIFQ5QGS0 1516 aa19.67■□□□□ 0.74
C9orf3-202ENST00000297979 PLEKHG5O94827 1062 aa19.67■□□□□ 0.74
C9orf3-202ENST00000297979 MLECQ14165 292 aa19.67■□□□□ 0.74
C9orf3-202ENST00000297979 CFAP70Q5T0N1 1121 aa19.67■□□□□ 0.74
C9orf3-202ENST00000297979 EIF3AQ14152 1382 aaKnown RBP19.67■□□□□ 0.74
C9orf3-202ENST00000297979 TMEM131LA2VDJ0 1609 aa19.66■□□□□ 0.74
C9orf3-202ENST00000297979 SETBP1Q9Y6X0 1596 aa19.66■□□□□ 0.74
C9orf3-202ENST00000297979 SPATA31D1Q6ZQQ2 1576 aa19.65■□□□□ 0.74
C9orf3-202ENST00000297979 FBXO31Q5XUX0 539 aaPredicted RBP19.65■□□□□ 0.74
C9orf3-202ENST00000297979 PRKRIP1Q9H875 184 aaPredicted RBP19.65■□□□□ 0.74
C9orf3-202ENST00000297979 DISP3Q9P2K9 1392 aa19.65■□□□□ 0.74
C9orf3-202ENST00000297979 MYO5BQ9ULV0 1848 aa19.65■□□□□ 0.74
C9orf3-202ENST00000297979 TMF1P82094 1093 aa19.64■□□□□ 0.73
C9orf3-202ENST00000297979 TRHP20396 242 aaPredicted RBP19.64■□□□□ 0.73
C9orf3-202ENST00000297979 VGFO15240 615 aaPredicted RBP19.61■□□□□ 0.73
C9orf3-202ENST00000297979 ESF1Q9H501 851 aaKnown RBP19.61■□□□□ 0.73
C9orf3-202ENST00000297979 C14orf93Q9H972 538 aaKnown RBP19.61■□□□□ 0.73
C9orf3-202ENST00000297979 ZFYVE9O95405 1425 aa19.6■□□□□ 0.73
C9orf3-202ENST00000297979 ADGRB1O14514 1584 aa19.59■□□□□ 0.73
C9orf3-202ENST00000297979 MYO3AQ8NEV4 1616 aa19.59■□□□□ 0.73
C9orf3-202ENST00000297979 ZMYM3Q14202 1370 aa19.57■□□□□ 0.72
C9orf3-202ENST00000297979 SCAF1Q9H7N4 1312 aaKnown RBP19.56■□□□□ 0.72
C9orf3-202ENST00000297979 NUTM2DQ5VT03 806 aaPredicted RBP19.56■□□□□ 0.72
C9orf3-202ENST00000297979 CDCA8Q53HL2 280 aa19.55■□□□□ 0.72
C9orf3-202ENST00000297979 STAG3Q9UJ98 1225 aa19.54■□□□□ 0.72
C9orf3-202ENST00000297979 DNAJC5Q9H3Z4 198 aa19.52■□□□□ 0.72
C9orf3-202ENST00000297979 A2ML1A8K2U0 1454 aa19.52■□□□□ 0.72
C9orf3-202ENST00000297979 SBNO2Q9Y2G9 1366 aa19.52■□□□□ 0.72
C9orf3-202ENST00000297979 KDM5AP29375 1690 aaKnown RBP19.52■□□□□ 0.71
C9orf3-202ENST00000297979 NCBP3Q53F19 620 aaKnown RBP19.51■□□□□ 0.71
C9orf3-202ENST00000297979 KTN1Q86UP2 1357 aaKnown RBP19.5■□□□□ 0.71
C9orf3-202ENST00000297979 CCDC184Q52MB2 194 aa19.49■□□□□ 0.71
C9orf3-202ENST00000297979 TMEM132EQ6IEE7 984 aa19.49■□□□□ 0.71
C9orf3-202ENST00000297979 CENPJQ9HC77 1338 aaPredicted RBP19.49■□□□□ 0.71
C9orf3-202ENST00000297979 QRICH2Q9H0J4 1663 aa19.49■□□□□ 0.71
C9orf3-202ENST00000297979 MRS2Q9HD23 443 aa19.49■□□□□ 0.71
C9orf3-202ENST00000297979 TRAK1Q9UPV9 953 aa19.49■□□□□ 0.71
C9orf3-202ENST00000297979 TNRQ92752 1358 aa19.48■□□□□ 0.71
C9orf3-202ENST00000297979 CNGB1Q14028 1251 aaPredicted RBP19.47■□□□□ 0.71
C9orf3-202ENST00000297979 MYOM1P52179 1685 aa19.47■□□□□ 0.71
C9orf3-202ENST00000297979 ARHGEF28Q8N1W1 1705 aaKnown RBP19.47■□□□□ 0.71
C9orf3-202ENST00000297979 PER1O15534 1290 aaPredicted RBP19.47■□□□□ 0.71
C9orf3-202ENST00000297979 PANK3Q9H999 370 aa19.47■□□□□ 0.71
C9orf3-202ENST00000297979 ASXL1Q8IXJ9 1541 aa19.47■□□□□ 0.71
C9orf3-202ENST00000297979 RALBP1Q15311 655 aa19.46■□□□□ 0.71
C9orf3-202ENST00000297979 RIMS2Q9UQ26 1411 aa19.46■□□□□ 0.71
C9orf3-202ENST00000297979 FER1L4A9Z1Z3 1794 aa19.44■□□□□ 0.7
C9orf3-202ENST00000297979 ALKQ9UM73 1620 aa19.44■□□□□ 0.7
C9orf3-202ENST00000297979 PARD3Q8TEW0 1356 aa19.42■□□□□ 0.7
C9orf3-202ENST00000297979 GTF3C3Q9Y5Q9 886 aa19.42■□□□□ 0.7
C9orf3-202ENST00000297979 MYBBP1AQ9BQG0 1328 aaKnown RBP19.41■□□□□ 0.7
C9orf3-202ENST00000297979 C3P01024 1663 aa19.41■□□□□ 0.7
C9orf3-202ENST00000297979 UBR1Q8IWV7 1749 aa19.4■□□□□ 0.7
C9orf3-202ENST00000297979 PLPPR3Q6T4P5 718 aa19.39■□□□□ 0.7
C9orf3-202ENST00000297979 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.39■□□□□ 0.69
C9orf3-202ENST00000297979 SENP3Q9H4L4 574 aaPredicted RBP19.39■□□□□ 0.69
C9orf3-202ENST00000297979 NLRP1Q9C000 1473 aa19.39■□□□□ 0.69
C9orf3-202ENST00000297979 YTHDC2Q9H6S0 1430 aaKnown RBP19.38■□□□□ 0.69
C9orf3-202ENST00000297979 FAM9BQ8IZU0 186 aa19.38■□□□□ 0.69
C9orf3-202ENST00000297979 SETD1AO15047 1707 aaKnown RBP19.37■□□□□ 0.69
C9orf3-202ENST00000297979 BRD4O60885 1362 aaPredicted RBP19.37■□□□□ 0.69
C9orf3-202ENST00000297979 HNRNPUQ00839 825 aaKnown RBP eCLIP19.37■□□□□ 0.69
C9orf3-202ENST00000297979 PTPRMP28827 1452 aa19.36■□□□□ 0.69
C9orf3-202ENST00000297979 KNSTRNQ9Y448 316 aa19.36■□□□□ 0.69
C9orf3-202ENST00000297979 CC2D1BQ5T0F9 858 aaKnown RBP19.35■□□□□ 0.69
C9orf3-202ENST00000297979 STK26Q9P289 416 aa19.35■□□□□ 0.69
C9orf3-202ENST00000297979 NRXN3Q9Y4C0 1643 aa19.35■□□□□ 0.69
C9orf3-202ENST00000297979 CEBPAP49715 358 aaPredicted RBP19.35■□□□□ 0.69
C9orf3-202ENST00000297979 HDGFP51858 240 aaKnown RBP19.35■□□□□ 0.69
C9orf3-202ENST00000297979 TMC1Q8TDI8 760 aa19.34■□□□□ 0.69
C9orf3-202ENST00000297979 TULP4Q9NRJ4 1543 aa19.34■□□□□ 0.69
C9orf3-202ENST00000297979 NLRP13Q86W25 1043 aa19.33■□□□□ 0.69
C9orf3-202ENST00000297979 TMEM2Q9UHN6 1383 aa19.33■□□□□ 0.69
C9orf3-202ENST00000297979 EVC2Q86UK5 1308 aa19.33■□□□□ 0.69
C9orf3-202ENST00000297979 PUS7Q96PZ0 661 aaKnown RBP19.32■□□□□ 0.68
C9orf3-202ENST00000297979 AMER1Q5JTC6 1135 aaPredicted RBP19.31■□□□□ 0.68
C9orf3-202ENST00000297979 DLC1Q96QB1 1528 aa19.31■□□□□ 0.68
C9orf3-202ENST00000297979 NPC1L1Q9UHC9 1359 aa19.31■□□□□ 0.68
C9orf3-202ENST00000297979 LRPPRCP42704 1394 aaKnown RBP19.3■□□□□ 0.68
C9orf3-202ENST00000297979 PNISRQ8TF01 805 aaKnown RBP19.29■□□□□ 0.68
C9orf3-202ENST00000297979 PRAM1Q96QH2 718 aa19.29■□□□□ 0.68
C9orf3-202ENST00000297979 SAFB2Q14151 953 aaKnown RBP eCLIP19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms