RNA–Protein interactions for RNA: ENST00000297265.4

CHMP4C-201, Transcript of charged multivesicular body protein 4C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4C, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4C-201ENST00000297265 SYNMO15061 1565 aa18.82■□□□□ 0.6
CHMP4C-201ENST00000297265 PIK3C2BO00750 1634 aa18.81■□□□□ 0.6
CHMP4C-201ENST00000297265 POLR3GLQ9BT43 218 aa18.8■□□□□ 0.6
CHMP4C-201ENST00000297265 AGLP35573 1532 aa18.78■□□□□ 0.6
CHMP4C-201ENST00000297265 DISP3Q9P2K9 1392 aa18.78■□□□□ 0.6
CHMP4C-201ENST00000297265 PPLO60437 1756 aa18.77■□□□□ 0.59
CHMP4C-201ENST00000297265 CFAP70Q5T0N1 1121 aa18.76■□□□□ 0.59
CHMP4C-201ENST00000297265 SCAF11Q99590 1463 aaKnown RBP18.76■□□□□ 0.59
CHMP4C-201ENST00000297265 IDI1Q13907 227 aa18.73■□□□□ 0.59
CHMP4C-201ENST00000297265 PREX1Q8TCU6 1659 aa18.73■□□□□ 0.59
CHMP4C-201ENST00000297265 PER1O15534 1290 aaPredicted RBP18.72■□□□□ 0.59
CHMP4C-201ENST00000297265 CHGAP10645 457 aaKnown RBP18.72■□□□□ 0.59
CHMP4C-201ENST00000297265 PIK3C2GO75747 1445 aa18.72■□□□□ 0.59
CHMP4C-201ENST00000297265 RPGRIP1LQ68CZ1 1315 aa18.71■□□□□ 0.59
CHMP4C-201ENST00000297265 FBXO31Q5XUX0 539 aaPredicted RBP18.7■□□□□ 0.58
CHMP4C-201ENST00000297265 PPP6R1Q9UPN7 881 aa18.7■□□□□ 0.58
CHMP4C-201ENST00000297265 ARHGEF40Q8TER5 1519 aa18.7■□□□□ 0.58
CHMP4C-201ENST00000297265 TMF1P82094 1093 aa18.69■□□□□ 0.58
CHMP4C-201ENST00000297265 SLC52A1Q9NWF4 448 aa18.69■□□□□ 0.58
CHMP4C-201ENST00000297265 NEXMIFQ5QGS0 1516 aa18.69■□□□□ 0.58
CHMP4C-201ENST00000297265 C14orf93Q9H972 538 aaKnown RBP18.68■□□□□ 0.58
CHMP4C-201ENST00000297265 SETBP1Q9Y6X0 1596 aa18.67■□□□□ 0.58
CHMP4C-201ENST00000297265 TMEM131LA2VDJ0 1609 aa18.66■□□□□ 0.58
CHMP4C-201ENST00000297265 ADGRB1O14514 1584 aa18.66■□□□□ 0.58
CHMP4C-201ENST00000297265 MYO5BQ9ULV0 1848 aa18.66■□□□□ 0.58
CHMP4C-201ENST00000297265 CLTCQ00610 1675 aaKnown RBP18.65■□□□□ 0.58
CHMP4C-201ENST00000297265 MRS2Q9HD23 443 aa18.65■□□□□ 0.58
CHMP4C-201ENST00000297265 ERVK-7P63135 1459 aa18.65■□□□□ 0.58
CHMP4C-201ENST00000297265 MYO3AQ8NEV4 1616 aa18.63■□□□□ 0.57
CHMP4C-201ENST00000297265 ZFYVE9O95405 1425 aa18.62■□□□□ 0.57
CHMP4C-201ENST00000297265 EIF3AQ14152 1382 aaKnown RBP18.62■□□□□ 0.57
CHMP4C-201ENST00000297265 CNGB1Q14028 1251 aaPredicted RBP18.62■□□□□ 0.57
CHMP4C-201ENST00000297265 PANK3Q9H999 370 aa18.62■□□□□ 0.57
CHMP4C-201ENST00000297265 NUTM2DQ5VT03 806 aaPredicted RBP18.61■□□□□ 0.57
CHMP4C-201ENST00000297265 VGFO15240 615 aaPredicted RBP18.6■□□□□ 0.57
CHMP4C-201ENST00000297265 SPATA31D1Q6ZQQ2 1576 aa18.6■□□□□ 0.57
CHMP4C-201ENST00000297265 MLECQ14165 292 aa18.6■□□□□ 0.57
CHMP4C-201ENST00000297265 KTN1Q86UP2 1357 aaKnown RBP18.59■□□□□ 0.57
CHMP4C-201ENST00000297265 TMEM132EQ6IEE7 984 aa18.59■□□□□ 0.57
CHMP4C-201ENST00000297265 PARD3Q8TEW0 1356 aa18.59■□□□□ 0.57
CHMP4C-201ENST00000297265 RALBP1Q15311 655 aa18.58■□□□□ 0.57
CHMP4C-201ENST00000297265 FAM9BQ8IZU0 186 aa18.58■□□□□ 0.57
CHMP4C-201ENST00000297265 SBNO2Q9Y2G9 1366 aa18.58■□□□□ 0.57
CHMP4C-201ENST00000297265 HNRNPUQ00839 825 aaKnown RBP eCLIP18.58■□□□□ 0.56
CHMP4C-201ENST00000297265 MYOM1P52179 1685 aa18.58■□□□□ 0.56
CHMP4C-201ENST00000297265 MYBBP1AQ9BQG0 1328 aaKnown RBP18.55■□□□□ 0.56
CHMP4C-201ENST00000297265 CDCA8Q53HL2 280 aa18.55■□□□□ 0.56
CHMP4C-201ENST00000297265 PNISRQ8TF01 805 aaKnown RBP18.55■□□□□ 0.56
CHMP4C-201ENST00000297265 TRAK1Q9UPV9 953 aa18.55■□□□□ 0.56
CHMP4C-201ENST00000297265 ZMYM3Q14202 1370 aa18.54■□□□□ 0.56
CHMP4C-201ENST00000297265 CENPJQ9HC77 1338 aaPredicted RBP18.53■□□□□ 0.56
CHMP4C-201ENST00000297265 KDM5AP29375 1690 aaKnown RBP18.53■□□□□ 0.56
CHMP4C-201ENST00000297265 SLC24A1O60721 1099 aa18.53■□□□□ 0.56
CHMP4C-201ENST00000297265 ASXL1Q8IXJ9 1541 aa18.53■□□□□ 0.56
CHMP4C-201ENST00000297265 A2ML1A8K2U0 1454 aa18.52■□□□□ 0.56
CHMP4C-201ENST00000297265 BRD4O60885 1362 aaPredicted RBP18.52■□□□□ 0.56
CHMP4C-201ENST00000297265 QRICH2Q9H0J4 1663 aa18.5■□□□□ 0.55
CHMP4C-201ENST00000297265 ARHGEF28Q8N1W1 1705 aaKnown RBP18.5■□□□□ 0.55
CHMP4C-201ENST00000297265 AMER1Q5JTC6 1135 aaPredicted RBP18.5■□□□□ 0.55
CHMP4C-201ENST00000297265 CC2D1BQ5T0F9 858 aaKnown RBP18.5■□□□□ 0.55
CHMP4C-201ENST00000297265 TMC1Q8TDI8 760 aa18.49■□□□□ 0.55
CHMP4C-201ENST00000297265 LRPPRCP42704 1394 aaKnown RBP18.48■□□□□ 0.55
CHMP4C-201ENST00000297265 NLRP13Q86W25 1043 aa18.47■□□□□ 0.55
CHMP4C-201ENST00000297265 ZBED9Q6R2W3 1325 aa18.46■□□□□ 0.55
CHMP4C-201ENST00000297265 ALKQ9UM73 1620 aa18.46■□□□□ 0.54
CHMP4C-201ENST00000297265 CARD14Q9BXL6 1004 aa18.45■□□□□ 0.54
CHMP4C-201ENST00000297265 SENP3Q9H4L4 574 aaPredicted RBP18.45■□□□□ 0.54
CHMP4C-201ENST00000297265 STAG3Q9UJ98 1225 aa18.44■□□□□ 0.54
CHMP4C-201ENST00000297265 KNSTRNQ9Y448 316 aa18.44■□□□□ 0.54
CHMP4C-201ENST00000297265 NPC1L1Q9UHC9 1359 aa18.43■□□□□ 0.54
CHMP4C-201ENST00000297265 ESF1Q9H501 851 aaKnown RBP18.43■□□□□ 0.54
CHMP4C-201ENST00000297265 SUPT16HQ9Y5B9 1047 aaKnown RBP18.43■□□□□ 0.54
CHMP4C-201ENST00000297265 RIMS2Q9UQ26 1411 aa18.42■□□□□ 0.54
CHMP4C-201ENST00000297265 PTPRMP28827 1452 aa18.42■□□□□ 0.54
CHMP4C-201ENST00000297265 TRHP20396 242 aaPredicted RBP18.42■□□□□ 0.54
CHMP4C-201ENST00000297265 TULP4Q9NRJ4 1543 aa18.41■□□□□ 0.54
CHMP4C-201ENST00000297265 SETD1AO15047 1707 aaKnown RBP18.41■□□□□ 0.54
CHMP4C-201ENST00000297265 YTHDC2Q9H6S0 1430 aaKnown RBP18.4■□□□□ 0.54
CHMP4C-201ENST00000297265 PUS7Q96PZ0 661 aaKnown RBP18.39■□□□□ 0.54
CHMP4C-201ENST00000297265 TNRQ92752 1358 aa18.39■□□□□ 0.53
CHMP4C-201ENST00000297265 STK26Q9P289 416 aa18.39■□□□□ 0.53
CHMP4C-201ENST00000297265 NRXN3Q9Y4C0 1643 aa18.39■□□□□ 0.53
CHMP4C-201ENST00000297265 SLC12A5Q9H2X9 1139 aa18.38■□□□□ 0.53
CHMP4C-201ENST00000297265 PPP2R1AP30153 589 aa18.37■□□□□ 0.53
CHMP4C-201ENST00000297265 UBR1Q8IWV7 1749 aa18.37■□□□□ 0.53
CHMP4C-201ENST00000297265 EVC2Q86UK5 1308 aa18.35■□□□□ 0.53
CHMP4C-201ENST00000297265 CEBPAP49715 358 aaPredicted RBP18.35■□□□□ 0.53
CHMP4C-201ENST00000297265 SAFB2Q14151 953 aaKnown RBP eCLIP18.35■□□□□ 0.53
CHMP4C-201ENST00000297265 PRAM1Q96QH2 718 aa18.34■□□□□ 0.53
CHMP4C-201ENST00000297265 C3P01024 1663 aa18.33■□□□□ 0.52
CHMP4C-201ENST00000297265 SENP3-EIF4A1A0A087X0R7 540 aa18.32■□□□□ 0.52
CHMP4C-201ENST00000297265 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.32■□□□□ 0.52
CHMP4C-201ENST00000297265 CABP2Q9NPB3 220 aa18.32■□□□□ 0.52
CHMP4C-201ENST00000297265 DLC1Q96QB1 1528 aa18.31■□□□□ 0.52
CHMP4C-201ENST00000297265 TMEM2Q9UHN6 1383 aa18.31■□□□□ 0.52
CHMP4C-201ENST00000297265 FKBP8Q14318 412 aa18.31■□□□□ 0.52
CHMP4C-201ENST00000297265 INSRP06213 1382 aa18.3■□□□□ 0.52
CHMP4C-201ENST00000297265 METP08581 1390 aa18.3■□□□□ 0.52
CHMP4C-201ENST00000297265 ABCC11Q96J66 1382 aa18.3■□□□□ 0.52
CHMP4C-201ENST00000297265 NSD3Q9BZ95 1437 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms