RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 SHANK2Q9UPX8 1470 aa19.53■□□□□ 0.72
SHH-201ENST00000297261 TMEM132EQ6IEE7 984 aa19.53■□□□□ 0.72
SHH-201ENST00000297261 HSP90AA2PQ14568 343 aaPredicted RBP19.52■□□□□ 0.72
SHH-201ENST00000297261 ZBTB7CA1YPR0 619 aa19.52■□□□□ 0.71
SHH-201ENST00000297261 BRPF3Q9ULD4 1205 aa19.52■□□□□ 0.71
SHH-201ENST00000297261 U2SURPO15042 1029 aaKnown RBP19.51■□□□□ 0.71
SHH-201ENST00000297261 C14orf37Q86TY3 774 aa19.51■□□□□ 0.71
SHH-201ENST00000297261 PZPP20742 1482 aa19.5■□□□□ 0.71
SHH-201ENST00000297261 ABCC10Q5T3U5 1492 aa19.5■□□□□ 0.71
SHH-201ENST00000297261 PLEKHG5O94827 1062 aa19.49■□□□□ 0.71
SHH-201ENST00000297261 PDE3BQ13370 1112 aa19.49■□□□□ 0.71
SHH-201ENST00000297261 ADGRL2O95490 1459 aa19.49■□□□□ 0.71
SHH-201ENST00000297261 CENPJQ9HC77 1338 aaPredicted RBP19.48■□□□□ 0.71
SHH-201ENST00000297261 CRBNQ96SW2 442 aa19.48■□□□□ 0.71
SHH-201ENST00000297261 NFKBIBQ15653 356 aa19.48■□□□□ 0.71
SHH-201ENST00000297261 HDGFL2Q7Z4V5 671 aaPredicted RBP19.48■□□□□ 0.71
SHH-201ENST00000297261 ERBINQ96RT1 1412 aa19.47■□□□□ 0.71
SHH-201ENST00000297261 FAM161AQ3B820 660 aa19.47■□□□□ 0.71
SHH-201ENST00000297261 CCDC184Q52MB2 194 aa19.47■□□□□ 0.71
SHH-201ENST00000297261 DUOX2Q9NRD8 1548 aa19.46■□□□□ 0.71
SHH-201ENST00000297261 DHX29Q7Z478 1369 aaKnown RBP19.46■□□□□ 0.71
SHH-201ENST00000297261 FAM135AQ9P2D6 1515 aa19.46■□□□□ 0.71
SHH-201ENST00000297261 MINK1Q8N4C8 1332 aaPredicted RBP19.45■□□□□ 0.7
SHH-201ENST00000297261 MAPK8IP3Q9UPT6 1336 aa19.45■□□□□ 0.7
SHH-201ENST00000297261 MS4A1P11836 297 aa19.45■□□□□ 0.7
SHH-201ENST00000297261 MFAP1P55081 439 aaKnown RBP19.45■□□□□ 0.7
SHH-201ENST00000297261 KDM6BO15054 1643 aa19.44■□□□□ 0.7
SHH-201ENST00000297261 ERCC6L2Q5T890 1561 aa19.44■□□□□ 0.7
SHH-201ENST00000297261 GOLGA2Q08379 1002 aa19.44■□□□□ 0.7
SHH-201ENST00000297261 GCC2Q8IWJ2 1684 aa19.44■□□□□ 0.7
SHH-201ENST00000297261 CLUAP1Q96AJ1 413 aa19.44■□□□□ 0.7
SHH-201ENST00000297261 EVC2Q86UK5 1308 aa19.44■□□□□ 0.7
SHH-201ENST00000297261 CCDC146Q8IYE0 955 aa19.42■□□□□ 0.7
SHH-201ENST00000297261 TERF2IPQ9NYB0 399 aa19.42■□□□□ 0.7
SHH-201ENST00000297261 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.42■□□□□ 0.7
SHH-201ENST00000297261 GBP4Q96PP9 640 aa19.41■□□□□ 0.7
SHH-201ENST00000297261 DENND4BO75064 1496 aaPredicted RBP19.41■□□□□ 0.7
SHH-201ENST00000297261 CENPQQ7L2Z9 268 aaPredicted RBP19.4■□□□□ 0.7
SHH-201ENST00000297261 SOX12O15370 315 aa19.4■□□□□ 0.7
SHH-201ENST00000297261 MBD5Q9P267 1494 aa19.39■□□□□ 0.69
SHH-201ENST00000297261 U2AF1L5P0DN76 240 aaPredicted RBP19.39■□□□□ 0.69
SHH-201ENST00000297261 U2AF1Q01081 240 aaKnown RBP eCLIP19.39■□□□□ 0.69
SHH-201ENST00000297261 EID1Q9Y6B2 187 aa19.39■□□□□ 0.69
SHH-201ENST00000297261 KDM5BQ9UGL1 1544 aa19.39■□□□□ 0.69
SHH-201ENST00000297261 CASC1Q6TDU7 716 aa19.39■□□□□ 0.69
SHH-201ENST00000297261 FOXD4L1Q9NU39 408 aa19.38■□□□□ 0.69
SHH-201ENST00000297261 SLC52A1Q9NWF4 448 aa19.38■□□□□ 0.69
SHH-201ENST00000297261 RWDD1Q9H446 243 aaPredicted RBP19.37■□□□□ 0.69
SHH-201ENST00000297261 LRRIQ1Q96JM4 1722 aa19.37■□□□□ 0.69
SHH-201ENST00000297261 NUTM2FA1L443 756 aa19.37■□□□□ 0.69
SHH-201ENST00000297261 AMER1Q5JTC6 1135 aaPredicted RBP19.36■□□□□ 0.69
SHH-201ENST00000297261 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.35■□□□□ 0.69
SHH-201ENST00000297261 ZNF518AQ6AHZ1 1483 aa19.35■□□□□ 0.69
SHH-201ENST00000297261 ADGRF5Q8IZF2 1346 aa19.35■□□□□ 0.69
SHH-201ENST00000297261 CGNL1Q0VF96 1302 aa19.34■□□□□ 0.69
SHH-201ENST00000297261 CABP2Q9NPB3 220 aa19.33■□□□□ 0.69
SHH-201ENST00000297261 UHRF1BP1LA0JNW5 1464 aa19.33■□□□□ 0.69
SHH-201ENST00000297261 TTC37Q6PGP7 1564 aa19.33■□□□□ 0.68
SHH-201ENST00000297261 BRD4O60885 1362 aaPredicted RBP19.33■□□□□ 0.68
SHH-201ENST00000297261 SAMD9LQ8IVG5 1584 aa19.33■□□□□ 0.68
SHH-201ENST00000297261 ADGBQ8N7X0 1667 aa19.33■□□□□ 0.68
SHH-201ENST00000297261 A2MP01023 1474 aa19.32■□□□□ 0.68
SHH-201ENST00000297261 RTEL1-TNFRSF6BF6WH68 1400 aa19.32■□□□□ 0.68
SHH-201ENST00000297261 FRAT2O75474 233 aaPredicted RBP19.32■□□□□ 0.68
SHH-201ENST00000297261 ARHGEF5Q12774 1597 aa19.32■□□□□ 0.68
SHH-201ENST00000297261 TEX14Q8IWB6 1497 aa19.32■□□□□ 0.68
SHH-201ENST00000297261 RALGAPBQ86X10 1494 aa19.31■□□□□ 0.68
SHH-201ENST00000297261 PMFBP1Q8TBY8 1022 aa19.31■□□□□ 0.68
SHH-201ENST00000297261 RPGRIP1LQ68CZ1 1315 aa19.3■□□□□ 0.68
SHH-201ENST00000297261 CDK11BP21127 795 aaKnown RBP19.3■□□□□ 0.68
SHH-201ENST00000297261 ITPRIPQ8IWB1 547 aa19.3■□□□□ 0.68
SHH-201ENST00000297261 LMOD2Q6P5Q4 547 aa19.29■□□□□ 0.68
SHH-201ENST00000297261 APBB1O00213 710 aa19.29■□□□□ 0.68
SHH-201ENST00000297261 MYO5CQ9NQX4 1742 aa19.28■□□□□ 0.68
SHH-201ENST00000297261 IDI1Q13907 227 aa19.28■□□□□ 0.68
SHH-201ENST00000297261 FBXO31Q5XUX0 539 aaPredicted RBP19.28■□□□□ 0.68
SHH-201ENST00000297261 SLC12A5Q9H2X9 1139 aa19.28■□□□□ 0.68
SHH-201ENST00000297261 PRAG1Q86YV5 1406 aa19.28■□□□□ 0.68
SHH-201ENST00000297261 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.28■□□□□ 0.68
SHH-201ENST00000297261 BCL2L13Q9BXK5 485 aa19.28■□□□□ 0.68
SHH-201ENST00000297261 PNISRQ8TF01 805 aaKnown RBP19.27■□□□□ 0.68
SHH-201ENST00000297261 COG6Q9Y2V7 657 aa19.27■□□□□ 0.68
SHH-201ENST00000297261 PRAM1Q96QH2 718 aa19.26■□□□□ 0.67
SHH-201ENST00000297261 CDCA7LQ96GN5 454 aa19.26■□□□□ 0.67
SHH-201ENST00000297261 RRP7AQ9Y3A4 280 aaKnown RBP19.26■□□□□ 0.67
SHH-201ENST00000297261 ZCCHC11Q5TAX3 1644 aaKnown RBP19.26■□□□□ 0.67
SHH-201ENST00000297261 CHAF1AQ13111 956 aaPredicted RBP19.26■□□□□ 0.67
SHH-201ENST00000297261 PPP2R1AP30153 589 aa19.25■□□□□ 0.67
SHH-201ENST00000297261 BACH2Q9BYV9 841 aa19.25■□□□□ 0.67
SHH-201ENST00000297261 CDC42BPAQ5VT25 1732 aa19.25■□□□□ 0.67
SHH-201ENST00000297261 PREX2Q70Z35 1606 aa19.25■□□□□ 0.67
SHH-201ENST00000297261 APAF1O14727 1248 aa19.25■□□□□ 0.67
SHH-201ENST00000297261 CALD1Q05682 793 aaKnown RBP19.25■□□□□ 0.67
SHH-201ENST00000297261 NOS1P29475 1434 aa19.24■□□□□ 0.67
SHH-201ENST00000297261 ATP7AQ04656 1500 aa19.24■□□□□ 0.67
SHH-201ENST00000297261 ADCY10Q96PN6 1610 aa19.24■□□□□ 0.67
SHH-201ENST00000297261 ADAMTS8Q9UP79 889 aa19.24■□□□□ 0.67
SHH-201ENST00000297261 CHMP4BQ9H444 224 aaKnown RBP19.23■□□□□ 0.67
SHH-201ENST00000297261 DISP3Q9P2K9 1392 aa19.23■□□□□ 0.67
SHH-201ENST00000297261 ARHGEF12Q9NZN5 1544 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms