RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 CD109Q6YHK3 1445 aa15.29■□□□□ 0.04
MSH3-201ENST00000265081 KDM2AQ9Y2K7 1162 aa15.28■□□□□ 0.04
MSH3-201ENST00000265081 BLMP54132 1417 aaPredicted RBP15.28■□□□□ 0.04
MSH3-201ENST00000265081 OSCARQ8IYS5 282 aa15.28■□□□□ 0.04
MSH3-201ENST00000265081 REREQ9P2R6 1566 aa15.27■□□□□ 0.04
MSH3-201ENST00000265081 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.27■□□□□ 0.04
MSH3-201ENST00000265081 TSHZ2Q9NRE2 1034 aa15.27■□□□□ 0.04
MSH3-201ENST00000265081 ADGRB1O14514 1584 aa15.27■□□□□ 0.03
MSH3-201ENST00000265081 USP32Q8NFA0 1604 aa15.26■□□□□ 0.03
MSH3-201ENST00000265081 NOS1P29475 1434 aa15.25■□□□□ 0.03
MSH3-201ENST00000265081 ARHGAP31Q2M1Z3 1444 aa15.25■□□□□ 0.03
MSH3-201ENST00000265081 NPC1L1Q9UHC9 1359 aa15.25■□□□□ 0.03
MSH3-201ENST00000265081 SBNO2Q9Y2G9 1366 aa15.25■□□□□ 0.03
MSH3-201ENST00000265081 NPATQ14207 1427 aa15.24■□□□□ 0.03
MSH3-201ENST00000265081 PIK3C2GO75747 1445 aa15.23■□□□□ 0.03
MSH3-201ENST00000265081 NEFLP07196 543 aa15.22■□□□□ 0.03
MSH3-201ENST00000265081 QRICH2Q9H0J4 1663 aa15.22■□□□□ 0.03
MSH3-201ENST00000265081 ERVK-7P63135 1459 aa15.22■□□□□ 0.03
MSH3-201ENST00000265081 NEXMIFQ5QGS0 1516 aa15.21■□□□□ 0.03
MSH3-201ENST00000265081 ARHGEF28Q8N1W1 1705 aaKnown RBP15.21■□□□□ 0.02
MSH3-201ENST00000265081 RGL3Q3MIN7 710 aa15.2■□□□□ 0.02
MSH3-201ENST00000265081 FAM9BQ8IZU0 186 aa15.2■□□□□ 0.02
MSH3-201ENST00000265081 DIP2BQ9P265 1576 aa15.2■□□□□ 0.02
MSH3-201ENST00000265081 ASXL1Q8IXJ9 1541 aa15.2■□□□□ 0.02
MSH3-201ENST00000265081 PREX1Q8TCU6 1659 aa15.2■□□□□ 0.02
MSH3-201ENST00000265081 EIF3AQ14152 1382 aaKnown RBP15.19■□□□□ 0.02
MSH3-201ENST00000265081 TMF1P82094 1093 aa15.18■□□□□ 0.02
MSH3-201ENST00000265081 NLRP13Q86W25 1043 aa15.18■□□□□ 0.02
MSH3-201ENST00000265081 RIMBP3CA6NJZ7 1639 aa15.18■□□□□ 0.02
MSH3-201ENST00000265081 RIMBP3BA6NNM3 1639 aa15.18■□□□□ 0.02
MSH3-201ENST00000265081 RIMBP3Q9UFD9 1639 aa15.18■□□□□ 0.02
MSH3-201ENST00000265081 KIF3BO15066 747 aa15.17■□□□□ 0.02
MSH3-201ENST00000265081 NUDCQ9Y266 331 aa15.17■□□□□ 0.02
MSH3-201ENST00000265081 TMEM131LA2VDJ0 1609 aa15.16■□□□□ 0.02
MSH3-201ENST00000265081 ZFYVE9O95405 1425 aa15.15■□□□□ 0.02
MSH3-201ENST00000265081 CLTCQ00610 1675 aaKnown RBP15.14■□□□□ 0.01
MSH3-201ENST00000265081 MYO5BQ9ULV0 1848 aa15.14■□□□□ 0.01
MSH3-201ENST00000265081 AGLP35573 1532 aa15.13■□□□□ 0.01
MSH3-201ENST00000265081 SHPRHQ149N8 1683 aa15.12■□□□□ 0.01
MSH3-201ENST00000265081 RPGRIP1LQ68CZ1 1315 aa15.12■□□□□ 0.01
MSH3-201ENST00000265081 SLC24A1O60721 1099 aa15.12■□□□□ 0.01
MSH3-201ENST00000265081 PPP4R2Q9NY27 417 aa15.12■□□□□ 0.01
MSH3-201ENST00000265081 AMER1Q5JTC6 1135 aaPredicted RBP15.11■□□□□ 0.01
MSH3-201ENST00000265081 PANK3Q9H999 370 aa15.11■□□□□ 0.01
MSH3-201ENST00000265081 TMC1Q8TDI8 760 aa15.11■□□□□ 0.01
MSH3-201ENST00000265081 ADGRF5Q8IZF2 1346 aa15.1■□□□□ 0.01
MSH3-201ENST00000265081 SETD1AO15047 1707 aaKnown RBP15.1■□□□□ 0.01
MSH3-201ENST00000265081 NPM1P06748 294 aaKnown RBP eCLIP15.1■□□□□ 0.01
MSH3-201ENST00000265081 CDCA8Q53HL2 280 aa15.1■□□□□ 0.01
MSH3-201ENST00000265081 BCANQ96GW7 911 aa15.09■□□□□ 0.01
MSH3-201ENST00000265081 PDE3BQ13370 1112 aa15.08■□□□□ 0
MSH3-201ENST00000265081 ANKRD26Q9UPS8 1709 aa15.07■□□□□ 0
MSH3-201ENST00000265081 KIF13AQ9H1H9 1805 aa15.06■□□□□ 0
MSH3-201ENST00000265081 C14orf93Q9H972 538 aaKnown RBP15.06■□□□□ 0
MSH3-201ENST00000265081 TULP4Q9NRJ4 1543 aa15.05■□□□□ 0
MSH3-201ENST00000265081 YEATS2Q9ULM3 1422 aa15.05■□□□□ 0
MSH3-201ENST00000265081 POLR3GLQ9BT43 218 aa15.05■□□□□ -0
MSH3-201ENST00000265081 PUS7Q96PZ0 661 aaKnown RBP15.04■□□□□ -0
MSH3-201ENST00000265081 SPATA31D1Q6ZQQ2 1576 aa15.04■□□□□ -0
MSH3-201ENST00000265081 CFAP65Q6ZU64 1925 aaKnown RBP15.03■□□□□ -0
MSH3-201ENST00000265081 ZNF521Q96K83 1311 aa15.02■□□□□ -0
MSH3-201ENST00000265081 CFAP70Q5T0N1 1121 aa15.02□□□□□ -0.01
MSH3-201ENST00000265081 ARHGEF40Q8TER5 1519 aa15.01□□□□□ -0.01
MSH3-201ENST00000265081 PPP2R1AP30153 589 aa15.01□□□□□ -0.01
MSH3-201ENST00000265081 PTPRMP28827 1452 aa14.99□□□□□ -0.01
MSH3-201ENST00000265081 RBM19Q9Y4C8 960 aaKnown RBP14.97□□□□□ -0.01
MSH3-201ENST00000265081 DLC1Q96QB1 1528 aa14.97□□□□□ -0.01
MSH3-201ENST00000265081 KNDC1Q76NI1 1749 aa14.97□□□□□ -0.01
MSH3-201ENST00000265081 IRX6P78412 446 aaPredicted RBP14.97□□□□□ -0.01
MSH3-201ENST00000265081 CC2D1BQ5T0F9 858 aaKnown RBP14.97□□□□□ -0.01
MSH3-201ENST00000265081 IQSEC2Q5JU85 1478 aa14.96□□□□□ -0.01
MSH3-201ENST00000265081 NRXN3Q9Y4C0 1643 aa14.96□□□□□ -0.01
MSH3-201ENST00000265081 POLR3AO14802 1390 aaPredicted RBP14.96□□□□□ -0.01
MSH3-201ENST00000265081 RAPGEF3O95398 923 aa14.96□□□□□ -0.02
MSH3-201ENST00000265081 CARD14Q9BXL6 1004 aa14.95□□□□□ -0.02
MSH3-201ENST00000265081 KNSTRNQ9Y448 316 aa14.95□□□□□ -0.02
MSH3-201ENST00000265081 CENPJQ9HC77 1338 aaPredicted RBP14.95□□□□□ -0.02
MSH3-201ENST00000265081 ALKQ9UM73 1620 aa14.95□□□□□ -0.02
MSH3-201ENST00000265081 ADGRB2O60241 1585 aa14.94□□□□□ -0.02
MSH3-201ENST00000265081 PPP6R1Q9UPN7 881 aa14.94□□□□□ -0.02
MSH3-201ENST00000265081 MED14O60244 1454 aa14.94□□□□□ -0.02
MSH3-201ENST00000265081 RRP1P56182 461 aaKnown RBP14.94□□□□□ -0.02
MSH3-201ENST00000265081 FANCIQ9NVI1 1328 aa14.94□□□□□ -0.02
MSH3-201ENST00000265081 TRMT2AQ8IZ69 625 aaKnown RBP14.93□□□□□ -0.02
MSH3-201ENST00000265081 SLC52A1Q9NWF4 448 aa14.93□□□□□ -0.02
MSH3-201ENST00000265081 PLEKHH1Q9ULM0 1364 aa14.93□□□□□ -0.02
MSH3-201ENST00000265081 TSPOAP1O95153 1857 aa14.93□□□□□ -0.02
MSH3-201ENST00000265081 NINLQ9Y2I6 1382 aa14.93□□□□□ -0.02
MSH3-201ENST00000265081 KIF20BQ96Q89 1820 aa14.93□□□□□ -0.02
MSH3-201ENST00000265081 NSD2O96028 1365 aa14.91□□□□□ -0.02
MSH3-201ENST00000265081 ADAMTS8Q9UP79 889 aa14.9□□□□□ -0.02
MSH3-201ENST00000265081 CD163L1Q9NR16 1453 aa14.9□□□□□ -0.02
MSH3-201ENST00000265081 NLRP1Q9C000 1473 aa14.9□□□□□ -0.02
MSH3-201ENST00000265081 GGT6Q6P531 493 aa14.89□□□□□ -0.03
MSH3-201ENST00000265081 RCAN3Q9UKA8 241 aa14.89□□□□□ -0.03
MSH3-201ENST00000265081 ANKRD36BQ8N2N9 1353 aa14.89□□□□□ -0.03
MSH3-201ENST00000265081 MYT1LQ9UL68 1186 aa14.88□□□□□ -0.03
MSH3-201ENST00000265081 VGFO15240 615 aaPredicted RBP14.88□□□□□ -0.03
MSH3-201ENST00000265081 NGEFQ8N5V2 710 aa14.88□□□□□ -0.03
MSH3-201ENST00000265081 A2ML1A8K2U0 1454 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 185.7 ms