RNA–Protein interactions for RNA: ENST00000262570.9

CHCHD3-201, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHCHD3, Length 1,598 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-201ENST00000262570 RPGRIP1LQ68CZ1 1315 aa24.15■■□□□ 1.46
CHCHD3-201ENST00000262570 LTKP29376 864 aa24.15■■□□□ 1.46
CHCHD3-201ENST00000262570 HDGFP51858 240 aaKnown RBP24.14■■□□□ 1.45
CHCHD3-201ENST00000262570 TXNDC2Q86VQ3 553 aa24.14■■□□□ 1.45
CHCHD3-201ENST00000262570 EID1Q9Y6B2 187 aa24.14■■□□□ 1.45
CHCHD3-201ENST00000262570 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.12■■□□□ 1.45
CHCHD3-201ENST00000262570 NCKAP5LQ9HCH0 1330 aa24.11■■□□□ 1.45
CHCHD3-201ENST00000262570 NEXMIFQ5QGS0 1516 aa24.1■■□□□ 1.45
CHCHD3-201ENST00000262570 SCAF11Q99590 1463 aaKnown RBP24.1■■□□□ 1.45
CHCHD3-201ENST00000262570 NUTM2DQ5VT03 806 aaPredicted RBP24.1■■□□□ 1.45
CHCHD3-201ENST00000262570 VGFO15240 615 aaPredicted RBP24.08■■□□□ 1.44
CHCHD3-201ENST00000262570 PPP1R15AO75807 674 aaPredicted RBP24.07■■□□□ 1.44
CHCHD3-201ENST00000262570 STRCQ7RTU9 1775 aa24.06■■□□□ 1.44
CHCHD3-201ENST00000262570 MED14O60244 1454 aa24.06■■□□□ 1.44
CHCHD3-201ENST00000262570 DCAF11Q8TEB1 546 aa24.04■■□□□ 1.44
CHCHD3-201ENST00000262570 L3MBTL2Q969R5 705 aa24.04■■□□□ 1.44
CHCHD3-201ENST00000262570 STAC3Q96MF2 364 aa24.03■■□□□ 1.44
CHCHD3-201ENST00000262570 PPLO60437 1756 aa24.03■■□□□ 1.44
CHCHD3-201ENST00000262570 PLEKHG1Q9ULL1 1385 aa24.03■■□□□ 1.44
CHCHD3-201ENST00000262570 POLR1AO95602 1720 aaPredicted RBP24.02■■□□□ 1.44
CHCHD3-201ENST00000262570 NPHP4O75161 1426 aaPredicted RBP24.02■■□□□ 1.44
CHCHD3-201ENST00000262570 ADGRF5Q8IZF2 1346 aa24.02■■□□□ 1.44
CHCHD3-201ENST00000262570 IFT172Q9UG01 1749 aa24.01■■□□□ 1.43
CHCHD3-201ENST00000262570 TONSLQ96HA7 1378 aa24.01■■□□□ 1.43
CHCHD3-201ENST00000262570 KDM2AQ9Y2K7 1162 aa24■■□□□ 1.43
CHCHD3-201ENST00000262570 DMRT2Q9Y5R5 561 aa24■■□□□ 1.43
CHCHD3-201ENST00000262570 MYOM2P54296 1465 aa23.99■■□□□ 1.43
CHCHD3-201ENST00000262570 SENP3Q9H4L4 574 aaPredicted RBP23.97■■□□□ 1.43
CHCHD3-201ENST00000262570 TIMELESSQ9UNS1 1208 aa23.97■■□□□ 1.43
CHCHD3-201ENST00000262570 NRXN1Q9ULB1 1477 aa23.97■■□□□ 1.43
CHCHD3-201ENST00000262570 BCANQ96GW7 911 aa23.96■■□□□ 1.43
CHCHD3-201ENST00000262570 IQGAP1P46940 1657 aa23.95■■□□□ 1.42
CHCHD3-201ENST00000262570 SETBP1Q9Y6X0 1596 aa23.94■■□□□ 1.42
CHCHD3-201ENST00000262570 PIK3C2GO75747 1445 aa23.94■■□□□ 1.42
CHCHD3-201ENST00000262570 ADAMTS13Q76LX8 1427 aa23.94■■□□□ 1.42
CHCHD3-201ENST00000262570 SLC26A8Q96RN1 970 aa23.94■■□□□ 1.42
CHCHD3-201ENST00000262570 TBX22Q9Y458 520 aa23.92■■□□□ 1.42
CHCHD3-201ENST00000262570 NRXN3Q9Y4C0 1643 aa23.91■■□□□ 1.42
CHCHD3-201ENST00000262570 PRAG1Q86YV5 1406 aa23.89■■□□□ 1.41
CHCHD3-201ENST00000262570 C14orf93Q9H972 538 aaKnown RBP23.88■■□□□ 1.41
CHCHD3-201ENST00000262570 DIP2AQ14689 1571 aa23.87■■□□□ 1.41
CHCHD3-201ENST00000262570 CFAP70Q5T0N1 1121 aa23.86■■□□□ 1.41
CHCHD3-201ENST00000262570 ALKQ9UM73 1620 aa23.86■■□□□ 1.41
CHCHD3-201ENST00000262570 METP08581 1390 aa23.84■■□□□ 1.41
CHCHD3-201ENST00000262570 NBPF8Q3BBV2 869 aa23.83■■□□□ 1.41
CHCHD3-201ENST00000262570 PIK3R4Q99570 1358 aa23.83■■□□□ 1.4
CHCHD3-201ENST00000262570 SETD1AO15047 1707 aaKnown RBP23.81■■□□□ 1.4
CHCHD3-201ENST00000262570 ZNF335Q9H4Z2 1342 aaPredicted RBP23.79■■□□□ 1.4
CHCHD3-201ENST00000262570 LAMC1P11047 1609 aa23.79■■□□□ 1.4
CHCHD3-201ENST00000262570 TMEM132EQ6IEE7 984 aa23.78■■□□□ 1.4
CHCHD3-201ENST00000262570 KCNA6P17658 529 aa23.78■■□□□ 1.4
CHCHD3-201ENST00000262570 PTPRUQ92729 1446 aa23.77■■□□□ 1.4
CHCHD3-201ENST00000262570 NBPF1Q3BBV0 1214 aa23.76■■□□□ 1.39
CHCHD3-201ENST00000262570 ASXL1Q8IXJ9 1541 aa23.76■■□□□ 1.39
CHCHD3-201ENST00000262570 AMOTL2Q9Y2J4 779 aa23.75■■□□□ 1.39
CHCHD3-201ENST00000262570 ADGRB1O14514 1584 aa23.75■■□□□ 1.39
CHCHD3-201ENST00000262570 KIAA1210Q9ULL0 1709 aa23.75■■□□□ 1.39
CHCHD3-201ENST00000262570 CHD2O14647 1828 aaKnown RBP23.73■■□□□ 1.39
CHCHD3-201ENST00000262570 TRPM1Q7Z4N2 1603 aa23.72■■□□□ 1.39
CHCHD3-201ENST00000262570 LRPPRCP42704 1394 aaKnown RBP23.72■■□□□ 1.39
CHCHD3-201ENST00000262570 YTHDC2Q9H6S0 1430 aaKnown RBP23.71■■□□□ 1.39
CHCHD3-201ENST00000262570 NWD1Q149M9 1564 aa23.71■■□□□ 1.39
CHCHD3-201ENST00000262570 ABCC11Q96J66 1382 aa23.71■■□□□ 1.39
CHCHD3-201ENST00000262570 ROCK2O75116 1388 aaKnown RBP23.7■■□□□ 1.38
CHCHD3-201ENST00000262570 STK26Q9P289 416 aa23.69■■□□□ 1.38
CHCHD3-201ENST00000262570 RALGAPBQ86X10 1494 aa23.69■■□□□ 1.38
CHCHD3-201ENST00000262570 STRCP1A6NGW2 1772 aa23.69■■□□□ 1.38
CHCHD3-201ENST00000262570 GPRASP1Q5JY77 1395 aa23.68■■□□□ 1.38
CHCHD3-201ENST00000262570 XRN1Q8IZH2 1706 aaKnown RBP23.68■■□□□ 1.38
CHCHD3-201ENST00000262570 LTBP4Q8N2S1 1624 aa23.68■■□□□ 1.38
CHCHD3-201ENST00000262570 TECPR2O15040 1411 aa23.68■■□□□ 1.38
CHCHD3-201ENST00000262570 NKTRP30414 1462 aaKnown RBP23.67■■□□□ 1.38
CHCHD3-201ENST00000262570 CPS1P31327 1500 aa23.65■■□□□ 1.38
CHCHD3-201ENST00000262570 PTCH1Q13635 1447 aa23.65■■□□□ 1.38
CHCHD3-201ENST00000262570 TRAK1Q9UPV9 953 aa23.65■■□□□ 1.38
CHCHD3-201ENST00000262570 ROBO2Q9HCK4 1378 aa23.65■■□□□ 1.38
CHCHD3-201ENST00000262570 PROSER2Q86WR7 435 aaPredicted RBP23.64■■□□□ 1.37
CHCHD3-201ENST00000262570 SIRT1Q96EB6 747 aa23.64■■□□□ 1.37
CHCHD3-201ENST00000262570 CARD11Q9BXL7 1154 aa23.64■■□□□ 1.37
CHCHD3-201ENST00000262570 LRRC7Q96NW7 1537 aa23.61■■□□□ 1.37
CHCHD3-201ENST00000262570 DLC1Q96QB1 1528 aa23.61■■□□□ 1.37
CHCHD3-201ENST00000262570 FAM135BQ49AJ0 1406 aa23.61■■□□□ 1.37
CHCHD3-201ENST00000262570 KNDC1Q76NI1 1749 aa23.6■■□□□ 1.37
CHCHD3-201ENST00000262570 RBM33Q96EV2 1170 aaKnown RBP23.6■■□□□ 1.37
CHCHD3-201ENST00000262570 TMEM94Q12767 1356 aa23.59■■□□□ 1.37
CHCHD3-201ENST00000262570 ZEB1P37275 1124 aaPredicted RBP23.59■■□□□ 1.37
CHCHD3-201ENST00000262570 WAPLQ7Z5K2 1190 aa23.59■■□□□ 1.37
CHCHD3-201ENST00000262570 PRAM1Q96QH2 718 aa23.58■■□□□ 1.37
CHCHD3-201ENST00000262570 PLEKHH1Q9ULM0 1364 aa23.57■■□□□ 1.36
CHCHD3-201ENST00000262570 NCOA3Q9Y6Q9 1424 aa23.57■■□□□ 1.36
CHCHD3-201ENST00000262570 POGKQ9P215 609 aa23.55■■□□□ 1.36
CHCHD3-201ENST00000262570 ARHGEF28Q8N1W1 1705 aaKnown RBP23.53■■□□□ 1.36
CHCHD3-201ENST00000262570 CERKQ8TCT0 537 aa23.52■■□□□ 1.36
CHCHD3-201ENST00000262570 EIF3AQ14152 1382 aaKnown RBP23.52■■□□□ 1.36
CHCHD3-201ENST00000262570 SAFB2Q14151 953 aaKnown RBP eCLIP23.52■■□□□ 1.364e-6■■■■□ 19.9
CHCHD3-201ENST00000262570 CENPJQ9HC77 1338 aaPredicted RBP23.5■■□□□ 1.35
CHCHD3-201ENST00000262570 C14orf37Q86TY3 774 aa23.5■■□□□ 1.35
CHCHD3-201ENST00000262570 C19orf44Q9H6X5 657 aa23.5■■□□□ 1.35
CHCHD3-201ENST00000262570 XIRP1Q702N8 1843 aaKnown RBP23.5■■□□□ 1.35
CHCHD3-201ENST00000262570 USP47Q96K76 1375 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms