RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 DISP3Q9P2K9 1392 aa17.64■□□□□ 0.41
SPTLC1-201ENST00000262554 RAPGEF3O95398 923 aa17.63■□□□□ 0.41
SPTLC1-201ENST00000262554 DIP2CQ9Y2E4 1556 aa17.63■□□□□ 0.41
SPTLC1-201ENST00000262554 RALBP1Q15311 655 aa17.63■□□□□ 0.41
SPTLC1-201ENST00000262554 GGT6Q6P531 493 aa17.63■□□□□ 0.41
SPTLC1-201ENST00000262554 MROH2AA6NES4 1674 aa17.62■□□□□ 0.41
SPTLC1-201ENST00000262554 PELP1Q8IZL8 1130 aaKnown RBP17.62■□□□□ 0.41
SPTLC1-201ENST00000262554 SCAF11Q99590 1463 aaKnown RBP17.62■□□□□ 0.41
SPTLC1-201ENST00000262554 FKBP8Q14318 412 aa17.61■□□□□ 0.41
SPTLC1-201ENST00000262554 ABCC3O15438 1527 aa17.61■□□□□ 0.41
SPTLC1-201ENST00000262554 ZBED9Q6R2W3 1325 aa17.6■□□□□ 0.41
SPTLC1-201ENST00000262554 NPATQ14207 1427 aa17.6■□□□□ 0.41
SPTLC1-201ENST00000262554 CFAP65Q6ZU64 1925 aaKnown RBP17.6■□□□□ 0.41
SPTLC1-201ENST00000262554 CAMSAP1Q5T5Y3 1602 aa17.6■□□□□ 0.41
SPTLC1-201ENST00000262554 MYBBP1AQ9BQG0 1328 aaKnown RBP17.6■□□□□ 0.41
SPTLC1-201ENST00000262554 WASHC2CQ9Y4E1 1318 aa17.59■□□□□ 0.41
SPTLC1-201ENST00000262554 EIF3AQ14152 1382 aaKnown RBP17.59■□□□□ 0.41
SPTLC1-201ENST00000262554 TMC1Q8TDI8 760 aa17.58■□□□□ 0.41
SPTLC1-201ENST00000262554 ADGRB3O60242 1522 aa17.58■□□□□ 0.41
SPTLC1-201ENST00000262554 BRD4O60885 1362 aaPredicted RBP17.57■□□□□ 0.4
SPTLC1-201ENST00000262554 ZC3H13Q5T200 1668 aaKnown RBP17.56■□□□□ 0.4
SPTLC1-201ENST00000262554 DIP2BQ9P265 1576 aa17.56■□□□□ 0.4
SPTLC1-201ENST00000262554 CDCA8Q53HL2 280 aa17.56■□□□□ 0.4
SPTLC1-201ENST00000262554 PER1O15534 1290 aaPredicted RBP17.55■□□□□ 0.4
SPTLC1-201ENST00000262554 PARD3Q8TEW0 1356 aa17.55■□□□□ 0.4
SPTLC1-201ENST00000262554 NRXN1Q9ULB1 1477 aa17.55■□□□□ 0.4
SPTLC1-201ENST00000262554 PPLO60437 1756 aa17.55■□□□□ 0.4
SPTLC1-201ENST00000262554 PNISRQ8TF01 805 aaKnown RBP17.54■□□□□ 0.4
SPTLC1-201ENST00000262554 ADGRF5Q8IZF2 1346 aa17.54■□□□□ 0.4
SPTLC1-201ENST00000262554 FAM69CQ0P6D2 419 aa17.53■□□□□ 0.4
SPTLC1-201ENST00000262554 PANK3Q9H999 370 aa17.53■□□□□ 0.4
SPTLC1-201ENST00000262554 CHGAP10645 457 aaKnown RBP17.52■□□□□ 0.4
SPTLC1-201ENST00000262554 ZMYM4Q5VZL5 1548 aa17.52■□□□□ 0.4
SPTLC1-201ENST00000262554 CFAP70Q5T0N1 1121 aa17.52■□□□□ 0.39
SPTLC1-201ENST00000262554 NOS1P29475 1434 aa17.52■□□□□ 0.39
SPTLC1-201ENST00000262554 YEATS2Q9ULM3 1422 aa17.52■□□□□ 0.39
SPTLC1-201ENST00000262554 SIGLEC1Q9BZZ2 1709 aa17.52■□□□□ 0.39
SPTLC1-201ENST00000262554 SYNMO15061 1565 aa17.51■□□□□ 0.39
SPTLC1-201ENST00000262554 SLC24A1O60721 1099 aa17.51■□□□□ 0.39
SPTLC1-201ENST00000262554 TSPOAP1O95153 1857 aa17.51■□□□□ 0.39
SPTLC1-201ENST00000262554 NLRP13Q86W25 1043 aa17.5■□□□□ 0.39
SPTLC1-201ENST00000262554 PIK3C2BO00750 1634 aa17.5■□□□□ 0.39
SPTLC1-201ENST00000262554 SETBP1Q9Y6X0 1596 aa17.5■□□□□ 0.39
SPTLC1-201ENST00000262554 ARHGAP31Q2M1Z3 1444 aa17.5■□□□□ 0.39
SPTLC1-201ENST00000262554 RPGRIP1LQ68CZ1 1315 aa17.5■□□□□ 0.39
SPTLC1-201ENST00000262554 BCANQ96GW7 911 aa17.5■□□□□ 0.39
SPTLC1-201ENST00000262554 KDM5AP29375 1690 aaKnown RBP17.5■□□□□ 0.39
SPTLC1-201ENST00000262554 LRPPRCP42704 1394 aaKnown RBP17.49■□□□□ 0.39
SPTLC1-201ENST00000262554 MYO3AQ8NEV4 1616 aa17.47■□□□□ 0.39
SPTLC1-201ENST00000262554 HOXD11P31277 338 aaPredicted RBP17.47■□□□□ 0.39
SPTLC1-201ENST00000262554 PIK3C2GO75747 1445 aa17.46■□□□□ 0.39
SPTLC1-201ENST00000262554 MYOM1P52179 1685 aa17.46■□□□□ 0.39
SPTLC1-201ENST00000262554 ZBTB22O15209 634 aa17.46■□□□□ 0.38
SPTLC1-201ENST00000262554 CC2D1BQ5T0F9 858 aaKnown RBP17.46■□□□□ 0.38
SPTLC1-201ENST00000262554 KNSTRNQ9Y448 316 aa17.44■□□□□ 0.38
SPTLC1-201ENST00000262554 C14orf93Q9H972 538 aaKnown RBP17.43■□□□□ 0.38
SPTLC1-201ENST00000262554 SMG6Q86US8 1419 aaKnown RBP17.43■□□□□ 0.38
SPTLC1-201ENST00000262554 PREX1Q8TCU6 1659 aa17.42■□□□□ 0.38
SPTLC1-201ENST00000262554 REREQ9P2R6 1566 aa17.42■□□□□ 0.38
SPTLC1-201ENST00000262554 ERVK-7P63135 1459 aa17.42■□□□□ 0.38
SPTLC1-201ENST00000262554 SBNO2Q9Y2G9 1366 aa17.42■□□□□ 0.38
SPTLC1-201ENST00000262554 SLC52A1Q9NWF4 448 aa17.41■□□□□ 0.38
SPTLC1-201ENST00000262554 NEXMIFQ5QGS0 1516 aa17.4■□□□□ 0.38
SPTLC1-201ENST00000262554 ERICH6BQ5W0A0 696 aa17.4■□□□□ 0.38
SPTLC1-201ENST00000262554 ASXL1Q8IXJ9 1541 aa17.4■□□□□ 0.38
SPTLC1-201ENST00000262554 ADGRB1O14514 1584 aa17.4■□□□□ 0.38
SPTLC1-201ENST00000262554 VGFO15240 615 aaPredicted RBP17.39■□□□□ 0.38
SPTLC1-201ENST00000262554 CENPJQ9HC77 1338 aaPredicted RBP17.39■□□□□ 0.37
SPTLC1-201ENST00000262554 QRICH2Q9H0J4 1663 aa17.38■□□□□ 0.37
SPTLC1-201ENST00000262554 NUDCQ9Y266 331 aa17.38■□□□□ 0.37
SPTLC1-201ENST00000262554 AGLP35573 1532 aa17.38■□□□□ 0.37
SPTLC1-201ENST00000262554 IDI1Q13907 227 aa17.37■□□□□ 0.37
SPTLC1-201ENST00000262554 INSRP06213 1382 aa17.37■□□□□ 0.37
SPTLC1-201ENST00000262554 MYO5BQ9ULV0 1848 aa17.37■□□□□ 0.37
SPTLC1-201ENST00000262554 NPC1L1Q9UHC9 1359 aa17.37■□□□□ 0.37
SPTLC1-201ENST00000262554 KIF13AQ9H1H9 1805 aa17.36■□□□□ 0.37
SPTLC1-201ENST00000262554 AMER1Q5JTC6 1135 aaPredicted RBP17.36■□□□□ 0.37
SPTLC1-201ENST00000262554 TMEM131LA2VDJ0 1609 aa17.36■□□□□ 0.37
SPTLC1-201ENST00000262554 IRX6P78412 446 aaPredicted RBP17.35■□□□□ 0.37
SPTLC1-201ENST00000262554 TRAK1Q9UPV9 953 aa17.35■□□□□ 0.37
SPTLC1-201ENST00000262554 ZFYVE9O95405 1425 aa17.35■□□□□ 0.37
SPTLC1-201ENST00000262554 TMEM132EQ6IEE7 984 aa17.33■□□□□ 0.36
SPTLC1-201ENST00000262554 PPP2R1AP30153 589 aa17.32■□□□□ 0.36
SPTLC1-201ENST00000262554 BLMP54132 1417 aaPredicted RBP17.32■□□□□ 0.36
SPTLC1-201ENST00000262554 ARHGEF28Q8N1W1 1705 aaKnown RBP17.31■□□□□ 0.36
SPTLC1-201ENST00000262554 CLTCQ00610 1675 aaKnown RBP17.31■□□□□ 0.36
SPTLC1-201ENST00000262554 NUTM2DQ5VT03 806 aaPredicted RBP17.31■□□□□ 0.36
SPTLC1-201ENST00000262554 ARHGEF40Q8TER5 1519 aa17.3■□□□□ 0.36
SPTLC1-201ENST00000262554 SENP3-EIF4A1A0A087X0R7 540 aa17.29■□□□□ 0.36
SPTLC1-201ENST00000262554 PDE3BQ13370 1112 aa17.29■□□□□ 0.36
SPTLC1-201ENST00000262554 PPP4R2Q9NY27 417 aa17.29■□□□□ 0.36
SPTLC1-201ENST00000262554 FBXO31Q5XUX0 539 aaPredicted RBP17.27■□□□□ 0.36
SPTLC1-201ENST00000262554 FOXD4L1Q9NU39 408 aa17.27■□□□□ 0.35
SPTLC1-201ENST00000262554 CARD14Q9BXL6 1004 aa17.26■□□□□ 0.35
SPTLC1-201ENST00000262554 TSHZ2Q9NRE2 1034 aa17.26■□□□□ 0.35
SPTLC1-201ENST00000262554 RNF123Q5XPI4 1314 aa17.25■□□□□ 0.35
SPTLC1-201ENST00000262554 WDR43Q15061 677 aaKnown RBP eCLIP17.25■□□□□ 0.35
SPTLC1-201ENST00000262554 PUS7Q96PZ0 661 aaKnown RBP17.25■□□□□ 0.35
SPTLC1-201ENST00000262554 SPATA31D1Q6ZQQ2 1576 aa17.25■□□□□ 0.35
SPTLC1-201ENST00000262554 STAG3Q9UJ98 1225 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms