RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 DIP2CQ9Y2E4 1556 aa17.15■□□□□ 0.34
SNX1-201ENST00000261889 SIGLEC1Q9BZZ2 1709 aa17.14■□□□□ 0.34
SNX1-201ENST00000261889 SCAPERQ9BY12 1400 aa17.14■□□□□ 0.34
SNX1-201ENST00000261889 ADAMTS8Q9UP79 889 aa17.14■□□□□ 0.33
SNX1-201ENST00000261889 KDM5DQ9BY66 1539 aa17.14■□□□□ 0.33
SNX1-201ENST00000261889 TCERG1O14776 1098 aaKnown RBP17.13■□□□□ 0.33
SNX1-201ENST00000261889 DAXXQ9UER7 740 aaPredicted RBP17.13■□□□□ 0.33
SNX1-201ENST00000261889 RNF17Q9BXT8 1623 aaKnown RBP17.12■□□□□ 0.33
SNX1-201ENST00000261889 NLRP13Q86W25 1043 aa17.12■□□□□ 0.33
SNX1-201ENST00000261889 DUOX2Q9NRD8 1548 aa17.12■□□□□ 0.33
SNX1-201ENST00000261889 MROH1Q8NDA8 1641 aa17.11■□□□□ 0.33
SNX1-201ENST00000261889 ANKRD50Q9ULJ7 1429 aa17.11■□□□□ 0.33
SNX1-201ENST00000261889 TSPY4P0CV99 314 aa17.11■□□□□ 0.33
SNX1-201ENST00000261889 TSPY10P0CW01 314 aa17.11■□□□□ 0.33
SNX1-201ENST00000261889 NFKBIBQ15653 356 aa17.1■□□□□ 0.33
SNX1-201ENST00000261889 NEUROD2Q15784 382 aa17.1■□□□□ 0.33
SNX1-201ENST00000261889 FRAT1Q92837 279 aaPredicted RBP17.1■□□□□ 0.33
SNX1-201ENST00000261889 VWDEQ8N2E2 1590 aa17.1■□□□□ 0.33
SNX1-201ENST00000261889 ARHGEF40Q8TER5 1519 aa17.1■□□□□ 0.33
SNX1-201ENST00000261889 KTN1Q86UP2 1357 aaKnown RBP17.09■□□□□ 0.33
SNX1-201ENST00000261889 FRAT2O75474 233 aaPredicted RBP17.09■□□□□ 0.33
SNX1-201ENST00000261889 TNNT2P45379 298 aaPredicted RBP17.09■□□□□ 0.33
SNX1-201ENST00000261889 SPRYD3Q8NCJ5 442 aa17.09■□□□□ 0.33
SNX1-201ENST00000261889 DISP3Q9P2K9 1392 aa17.08■□□□□ 0.32
SNX1-201ENST00000261889 ERBINQ96RT1 1412 aa17.08■□□□□ 0.32
SNX1-201ENST00000261889 RALBP1Q15311 655 aa17.07■□□□□ 0.32
SNX1-201ENST00000261889 LRPPRCP42704 1394 aaKnown RBP17.06■□□□□ 0.32
SNX1-201ENST00000261889 IQGAP3Q86VI3 1631 aa17.06■□□□□ 0.32
SNX1-201ENST00000261889 BCAR3O75815 825 aa17.05■□□□□ 0.32
SNX1-201ENST00000261889 SPINK5Q9NQ38 1064 aaPredicted RBP17.05■□□□□ 0.32
SNX1-201ENST00000261889 ANKRD30AQ9BXX3 1397 aa17.05■□□□□ 0.32
SNX1-201ENST00000261889 SLKQ9H2G2 1235 aaPredicted RBP17.05■□□□□ 0.32
SNX1-201ENST00000261889 PRDM15P57071 1507 aaPredicted RBP17.04■□□□□ 0.32
SNX1-201ENST00000261889 BRD4O60885 1362 aaPredicted RBP17.04■□□□□ 0.32
SNX1-201ENST00000261889 PER1O15534 1290 aaPredicted RBP17.04■□□□□ 0.32
SNX1-201ENST00000261889 AGLP35573 1532 aa17.03■□□□□ 0.32
SNX1-201ENST00000261889 BCL2L13Q9BXK5 485 aa17.02■□□□□ 0.32
SNX1-201ENST00000261889 DMRT2Q9Y5R5 561 aa17.02■□□□□ 0.32
SNX1-201ENST00000261889 WDR43Q15061 677 aaKnown RBP eCLIP17.01■□□□□ 0.31
SNX1-201ENST00000261889 RRP7AQ9Y3A4 280 aaKnown RBP17■□□□□ 0.31
SNX1-201ENST00000261889 AFAP1Q8N556 730 aa17■□□□□ 0.31
SNX1-201ENST00000261889 GSE1Q14687 1217 aa17■□□□□ 0.31
SNX1-201ENST00000261889 PLEKHH1Q9ULM0 1364 aa16.99■□□□□ 0.31
SNX1-201ENST00000261889 APAF1O14727 1248 aa16.98■□□□□ 0.31
SNX1-201ENST00000261889 SEC24BO95487 1268 aa16.98■□□□□ 0.31
SNX1-201ENST00000261889 FAM135AQ9P2D6 1515 aa16.98■□□□□ 0.31
SNX1-201ENST00000261889 YEATS2Q9ULM3 1422 aa16.97■□□□□ 0.31
SNX1-201ENST00000261889 ZC3H13Q5T200 1668 aaKnown RBP16.97■□□□□ 0.31
SNX1-201ENST00000261889 LMTK2Q8IWU2 1503 aa16.97■□□□□ 0.31
SNX1-201ENST00000261889 A2MP01023 1474 aa16.97■□□□□ 0.31
SNX1-201ENST00000261889 TNNQ9UQP3 1299 aa16.97■□□□□ 0.31
SNX1-201ENST00000261889 PPM1GO15355 546 aaPredicted RBP16.96■□□□□ 0.31
SNX1-201ENST00000261889 TESK2Q96S53 571 aa16.96■□□□□ 0.31
SNX1-201ENST00000261889 C8orf34Q49A92 452 aa16.95■□□□□ 0.3
SNX1-201ENST00000261889 PANK1Q8TE04 598 aa16.95■□□□□ 0.3
SNX1-201ENST00000261889 SPAG9O60271 1321 aaKnown RBP16.95■□□□□ 0.3
SNX1-201ENST00000261889 CLUAP1Q96AJ1 413 aa16.95■□□□□ 0.3
SNX1-201ENST00000261889 KNSTRNQ9Y448 316 aa16.95■□□□□ 0.3
SNX1-201ENST00000261889 ATP10AO60312 1499 aa16.94■□□□□ 0.3
SNX1-201ENST00000261889 COG6Q9Y2V7 657 aa16.94■□□□□ 0.3
SNX1-201ENST00000261889 PARD3Q8TEW0 1356 aa16.94■□□□□ 0.3
SNX1-201ENST00000261889 IGHDP01880 384 aa16.94■□□□□ 0.3
SNX1-201ENST00000261889 CANXP27824 592 aaKnown RBP16.94■□□□□ 0.3
SNX1-201ENST00000261889 DUSP27Q5VZP5 1158 aa16.93■□□□□ 0.3
SNX1-201ENST00000261889 RALGAPBQ86X10 1494 aa16.93■□□□□ 0.3
SNX1-201ENST00000261889 TET3O43151 1660 aa16.93■□□□□ 0.3
SNX1-201ENST00000261889 POGKQ9P215 609 aa16.93■□□□□ 0.3
SNX1-201ENST00000261889 RAPGEF3O95398 923 aa16.92■□□□□ 0.3
SNX1-201ENST00000261889 MS4A1P11836 297 aa16.92■□□□□ 0.3
SNX1-201ENST00000261889 PPP2R1AP30153 589 aa16.92■□□□□ 0.3
SNX1-201ENST00000261889 CCDC144AA2RUR9 1427 aa16.92■□□□□ 0.3
SNX1-201ENST00000261889 GZF1Q9H116 711 aaPredicted RBP16.92■□□□□ 0.3
SNX1-201ENST00000261889 E9PCH4 1651 aa16.91■□□□□ 0.3
SNX1-201ENST00000261889 TMF1P82094 1093 aa16.91■□□□□ 0.3
SNX1-201ENST00000261889 CEP152O94986 1710 aa16.9■□□□□ 0.3
SNX1-201ENST00000261889 GOLGA2Q08379 1002 aa16.89■□□□□ 0.3
SNX1-201ENST00000261889 PDE3BQ13370 1112 aa16.89■□□□□ 0.3
SNX1-201ENST00000261889 FAM161AQ3B820 660 aa16.89■□□□□ 0.29
SNX1-201ENST00000261889 DDRGK1Q96HY6 314 aa16.88■□□□□ 0.29
SNX1-201ENST00000261889 ARID4BQ4LE39 1312 aaPredicted RBP16.87■□□□□ 0.29
SNX1-201ENST00000261889 MROH2AA6NES4 1674 aa16.87■□□□□ 0.29
SNX1-201ENST00000261889 CAMSAP1Q5T5Y3 1602 aa16.87■□□□□ 0.29
SNX1-201ENST00000261889 KDM2BQ8NHM5 1336 aa16.87■□□□□ 0.29
SNX1-201ENST00000261889 EFCAB6Q5THR3 1501 aa16.86■□□□□ 0.29
SNX1-201ENST00000261889 ABCC3O15438 1527 aa16.85■□□□□ 0.29
SNX1-201ENST00000261889 WASHC2CQ9Y4E1 1318 aa16.85■□□□□ 0.29
SNX1-201ENST00000261889 CENPQQ7L2Z9 268 aaPredicted RBP16.85■□□□□ 0.29
SNX1-201ENST00000261889 POLR1AO95602 1720 aaPredicted RBP16.84■□□□□ 0.29
SNX1-201ENST00000261889 PRAG1Q86YV5 1406 aa16.84■□□□□ 0.29
SNX1-201ENST00000261889 USP35Q9P2H5 1018 aa16.83■□□□□ 0.29
SNX1-201ENST00000261889 CHGAP10645 457 aaKnown RBP16.83■□□□□ 0.28
SNX1-201ENST00000261889 SPHKAPQ2M3C7 1700 aa16.83■□□□□ 0.28
SNX1-201ENST00000261889 UHRF1BP1Q6BDS2 1440 aa16.82■□□□□ 0.28
SNX1-201ENST00000261889 NUTM2DQ5VT03 806 aaPredicted RBP16.82■□□□□ 0.28
SNX1-201ENST00000261889 NEURL4Q96JN8 1562 aa16.81■□□□□ 0.28
SNX1-201ENST00000261889 PIK3C2BO00750 1634 aa16.8■□□□□ 0.28
SNX1-201ENST00000261889 ADAMTSL3P82987 1691 aa16.8■□□□□ 0.28
SNX1-201ENST00000261889 ARHGAP31Q2M1Z3 1444 aa16.79■□□□□ 0.28
SNX1-201ENST00000261889 AMER1Q5JTC6 1135 aaPredicted RBP16.79■□□□□ 0.28
SNX1-201ENST00000261889 SLFN5Q08AF3 891 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms