RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 DUSP27Q5VZP5 1158 aa27.99■■■□□ 2.07
TRIM28-201ENST00000253024 TCERG1O14776 1098 aaKnown RBP27.99■■■□□ 2.07
TRIM28-201ENST00000253024 UNC13BO14795 1591 aa27.99■■■□□ 2.07
TRIM28-201ENST00000253024 GOLGA2Q08379 1002 aa27.99■■■□□ 2.07
TRIM28-201ENST00000253024 BACH2Q9BYV9 841 aa27.97■■■□□ 2.07
TRIM28-201ENST00000253024 WDR7Q9Y4E6 1490 aa27.97■■■□□ 2.07
TRIM28-201ENST00000253024 CARD14Q9BXL6 1004 aa27.96■■■□□ 2.07
TRIM28-201ENST00000253024 MAST1Q9Y2H9 1570 aa27.95■■■□□ 2.06
TRIM28-201ENST00000253024 IQGAP3Q86VI3 1631 aa27.95■■■□□ 2.06
TRIM28-201ENST00000253024 ATP10AO60312 1499 aa27.93■■■□□ 2.06
TRIM28-201ENST00000253024 WASHC2CQ9Y4E1 1318 aa27.93■■■□□ 2.06
TRIM28-201ENST00000253024 BLMP54132 1417 aaPredicted RBP27.92■■■□□ 2.06
TRIM28-201ENST00000253024 SLC12A5Q9H2X9 1139 aa27.91■■■□□ 2.06
TRIM28-201ENST00000253024 BCL2L13Q9BXK5 485 aa27.9■■■□□ 2.06
TRIM28-201ENST00000253024 ZCCHC11Q5TAX3 1644 aaKnown RBP27.9■■■□□ 2.06
TRIM28-201ENST00000253024 CFAP65Q6ZU64 1925 aaKnown RBP27.9■■■□□ 2.06
TRIM28-201ENST00000253024 FRAT1Q92837 279 aaPredicted RBP27.9■■■□□ 2.06
TRIM28-201ENST00000253024 CDCA8Q53HL2 280 aa27.89■■■□□ 2.06
TRIM28-201ENST00000253024 NEFMP07197 916 aa27.88■■■□□ 2.05
TRIM28-201ENST00000253024 KANK1Q14678 1352 aa27.88■■■□□ 2.05
TRIM28-201ENST00000253024 CANXP27824 592 aaKnown RBP27.86■■■□□ 2.05
TRIM28-201ENST00000253024 ABCC1P33527 1531 aa27.86■■■□□ 2.05
TRIM28-201ENST00000253024 PLXNC1O60486 1568 aa27.85■■■□□ 2.05
TRIM28-201ENST00000253024 SCAF11Q99590 1463 aaKnown RBP27.85■■■□□ 2.05
TRIM28-201ENST00000253024 FANCAO15360 1455 aa27.83■■■□□ 2.05
TRIM28-201ENST00000253024 SLFN5Q08AF3 891 aa27.83■■■□□ 2.05
TRIM28-201ENST00000253024 PANK1Q8TE04 598 aa27.82■■■□□ 2.04
TRIM28-201ENST00000253024 CLTCL1P53675 1640 aa27.81■■■□□ 2.04
TRIM28-201ENST00000253024 EIF2AK4Q9P2K8 1649 aaKnown RBP27.81■■■□□ 2.04
TRIM28-201ENST00000253024 ZMYM4Q5VZL5 1548 aa27.81■■■□□ 2.04
TRIM28-201ENST00000253024 MORC1Q86VD1 984 aa27.8■■■□□ 2.04
TRIM28-201ENST00000253024 STK26Q9P289 416 aa27.8■■■□□ 2.04
TRIM28-201ENST00000253024 COG6Q9Y2V7 657 aa27.8■■■□□ 2.04
TRIM28-201ENST00000253024 TNNQ9UQP3 1299 aa27.79■■■□□ 2.04
TRIM28-201ENST00000253024 MADDQ8WXG6 1647 aa27.78■■■□□ 2.04
TRIM28-201ENST00000253024 CLUAP1Q96AJ1 413 aa27.78■■■□□ 2.04
TRIM28-201ENST00000253024 ADGRL1O94910 1474 aa27.77■■■□□ 2.04
TRIM28-201ENST00000253024 SHROOM2Q13796 1616 aa27.77■■■□□ 2.04
TRIM28-201ENST00000253024 EIF3AQ14152 1382 aaKnown RBP27.75■■■□□ 2.03
TRIM28-201ENST00000253024 RTN4Q9NQC3 1192 aaKnown RBP27.75■■■□□ 2.03
TRIM28-201ENST00000253024 ZFYVE16Q7Z3T8 1539 aa27.74■■■□□ 2.03
TRIM28-201ENST00000253024 ASXL1Q8IXJ9 1541 aa27.74■■■□□ 2.03
TRIM28-201ENST00000253024 ZNF521Q96K83 1311 aa27.74■■■□□ 2.03
TRIM28-201ENST00000253024 RAPGEF3O95398 923 aa27.73■■■□□ 2.03
TRIM28-201ENST00000253024 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.73■■■□□ 2.03
TRIM28-201ENST00000253024 NOS1P29475 1434 aa27.73■■■□□ 2.03
TRIM28-201ENST00000253024 MS4A1P11836 297 aa27.72■■■□□ 2.03
TRIM28-201ENST00000253024 IGHDP01880 384 aa27.72■■■□□ 2.03
TRIM28-201ENST00000253024 CENPJQ9HC77 1338 aaPredicted RBP27.72■■■□□ 2.03
TRIM28-201ENST00000253024 DAXXQ9UER7 740 aaPredicted RBP27.72■■■□□ 2.03
TRIM28-201ENST00000253024 KDM2BQ8NHM5 1336 aa27.7■■■□□ 2.02
TRIM28-201ENST00000253024 CABP2Q9NPB3 220 aa27.69■■■□□ 2.02
TRIM28-201ENST00000253024 TRPM2O94759 1503 aa27.69■■■□□ 2.02
TRIM28-201ENST00000253024 CENPQQ7L2Z9 268 aaPredicted RBP27.69■■■□□ 2.02
TRIM28-201ENST00000253024 MTHFSP49914 203 aa27.68■■■□□ 2.02
TRIM28-201ENST00000253024 ATP7AQ04656 1500 aa27.68■■■□□ 2.02
TRIM28-201ENST00000253024 NSD3Q9BZ95 1437 aa27.67■■■□□ 2.02
TRIM28-201ENST00000253024 ERVK-7P63135 1459 aa27.67■■■□□ 2.02
TRIM28-201ENST00000253024 NPM1P06748 294 aaKnown RBP eCLIP27.67■■■□□ 2.02
TRIM28-201ENST00000253024 WWC1Q8IX03 1113 aa27.67■■■□□ 2.02
TRIM28-201ENST00000253024 PTPRTO14522 1441 aa27.67■■■□□ 2.02
TRIM28-201ENST00000253024 RNF17Q9BXT8 1623 aaKnown RBP27.66■■■□□ 2.02
TRIM28-201ENST00000253024 TCP11L2Q8N4U5 519 aa27.65■■■□□ 2.02
TRIM28-201ENST00000253024 SPHKAPQ2M3C7 1700 aa27.64■■■□□ 2.01
TRIM28-201ENST00000253024 LAMC1P11047 1609 aa27.64■■■□□ 2.01
TRIM28-201ENST00000253024 E9PSI1 815 aa27.63■■■□□ 2.01
TRIM28-201ENST00000253024 C8orf34Q49A92 452 aa27.63■■■□□ 2.01
TRIM28-201ENST00000253024 IQGAP1P46940 1657 aa27.62■■■□□ 2.01
TRIM28-201ENST00000253024 U2AF1L5P0DN76 240 aaPredicted RBP27.62■■■□□ 2.01
TRIM28-201ENST00000253024 U2AF1Q01081 240 aaKnown RBP eCLIP27.62■■■□□ 2.016e-7■□□□□ 9.2
TRIM28-201ENST00000253024 ASXL2Q76L83 1435 aa27.62■■■□□ 2.01
TRIM28-201ENST00000253024 U2SURPO15042 1029 aaKnown RBP27.61■■■□□ 2.01
TRIM28-201ENST00000253024 RTEL1-TNFRSF6BF6WH68 1400 aa27.6■■■□□ 2.01
TRIM28-201ENST00000253024 FAM161AQ3B820 660 aa27.6■■■□□ 2.01
TRIM28-201ENST00000253024 FBLN1P23142 703 aa27.58■■■□□ 2.01
TRIM28-201ENST00000253024 IL27Q8NEV9 243 aa27.58■■■□□ 2.01
TRIM28-201ENST00000253024 GGNBP2Q9H3C7 697 aa27.58■■■□□ 2.01
TRIM28-201ENST00000253024 PIK3C2GO75747 1445 aa27.58■■■□□ 2.01
TRIM28-201ENST00000253024 RLBP1P12271 317 aa27.57■■■□□ 2
TRIM28-201ENST00000253024 TSR2Q969E8 191 aaKnown RBP27.57■■■□□ 2
TRIM28-201ENST00000253024 SYNMO15061 1565 aa27.57■■■□□ 2
TRIM28-201ENST00000253024 NKTRP30414 1462 aaKnown RBP27.57■■■□□ 2
TRIM28-201ENST00000253024 SEC24BO95487 1268 aa27.57■■■□□ 2
TRIM28-201ENST00000253024 SRPK2P78362 688 aaKnown RBP27.56■■■□□ 2
TRIM28-201ENST00000253024 PPM1GO15355 546 aaPredicted RBP27.55■■■□□ 2
TRIM28-201ENST00000253024 TRMT2AQ8IZ69 625 aaKnown RBP27.54■■■□□ 2
TRIM28-201ENST00000253024 MYOM1P52179 1685 aa27.54■■■□□ 2
TRIM28-201ENST00000253024 ABCA6Q8N139 1617 aa27.54■■■□□ 2
TRIM28-201ENST00000253024 CEP152O94986 1710 aa27.53■■■□□ 2
TRIM28-201ENST00000253024 CLASP1Q7Z460 1538 aa27.53■■■□□ 2
TRIM28-201ENST00000253024 MINK1Q8N4C8 1332 aaPredicted RBP27.53■■■□□ 2
TRIM28-201ENST00000253024 UHRF1BP1LA0JNW5 1464 aa27.53■■■□□ 2
TRIM28-201ENST00000253024 KDM5AP29375 1690 aaKnown RBP27.5■■□□□ 1.99
TRIM28-201ENST00000253024 TET3O43151 1660 aa27.5■■□□□ 1.99
TRIM28-201ENST00000253024 DDRGK1Q96HY6 314 aa27.5■■□□□ 1.99
TRIM28-201ENST00000253024 NFKBIBQ15653 356 aa27.49■■□□□ 1.99
TRIM28-201ENST00000253024 SPRYD3Q8NCJ5 442 aa27.49■■□□□ 1.99
TRIM28-201ENST00000253024 RUNDC1Q96C34 613 aa27.49■■□□□ 1.99
TRIM28-201ENST00000253024 C14orf93Q9H972 538 aaKnown RBP27.49■■□□□ 1.99
TRIM28-201ENST00000253024 STAC3Q96MF2 364 aa27.48■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms