RNA–Protein interactions for RNA: ENST00000225742.13

SMARCD2-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 1 (best) BASIC

Gene SMARCD2, Length 1,800 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-201ENST00000225742 ZNF518AQ6AHZ1 1483 aa29.4■■■□□ 2.3
SMARCD2-201ENST00000225742 MAP3K4Q9Y6R4 1608 aa29.38■■■□□ 2.29
SMARCD2-201ENST00000225742 CC2D1BQ5T0F9 858 aaKnown RBP29.38■■■□□ 2.29
SMARCD2-201ENST00000225742 MYT1LQ9UL68 1186 aa29.36■■■□□ 2.29
SMARCD2-201ENST00000225742 IFT172Q9UG01 1749 aa29.35■■■□□ 2.29
SMARCD2-201ENST00000225742 NPC1L1Q9UHC9 1359 aa29.34■■■□□ 2.29
SMARCD2-201ENST00000225742 KNSTRNQ9Y448 316 aa29.34■■■□□ 2.29
SMARCD2-201ENST00000225742 KDM5AP29375 1690 aaKnown RBP29.32■■■□□ 2.28
SMARCD2-201ENST00000225742 PPRC1Q5VV67 1664 aaKnown RBP29.32■■■□□ 2.28
SMARCD2-201ENST00000225742 NPM1P06748 294 aaKnown RBP eCLIP29.31■■■□□ 2.28
SMARCD2-201ENST00000225742 CCDC136Q96JN2 1154 aa29.31■■■□□ 2.28
SMARCD2-201ENST00000225742 RRP1P56182 461 aaKnown RBP29.3■■■□□ 2.28
SMARCD2-201ENST00000225742 ABCA6Q8N139 1617 aa29.3■■■□□ 2.28
SMARCD2-201ENST00000225742 ASXL1Q8IXJ9 1541 aa29.3■■■□□ 2.28
SMARCD2-201ENST00000225742 RCAN3Q9UKA8 241 aa29.29■■■□□ 2.28
SMARCD2-201ENST00000225742 MYOM1P52179 1685 aa29.29■■■□□ 2.28
SMARCD2-201ENST00000225742 NRXN1Q9ULB1 1477 aa29.29■■■□□ 2.28
SMARCD2-201ENST00000225742 MLH3Q9UHC1 1453 aa29.28■■■□□ 2.28
SMARCD2-201ENST00000225742 POGZQ7Z3K3 1410 aa29.26■■■□□ 2.27
SMARCD2-201ENST00000225742 AMER1Q5JTC6 1135 aaPredicted RBP29.26■■■□□ 2.27
SMARCD2-201ENST00000225742 MYO3AQ8NEV4 1616 aa29.24■■■□□ 2.27
SMARCD2-201ENST00000225742 PIK3C2GO75747 1445 aa29.24■■■□□ 2.27
SMARCD2-201ENST00000225742 ADGRB3O60242 1522 aa29.23■■■□□ 2.27
SMARCD2-201ENST00000225742 PPP2R1AP30153 589 aa29.23■■■□□ 2.27
SMARCD2-201ENST00000225742 CD109Q6YHK3 1445 aa29.23■■■□□ 2.27
SMARCD2-201ENST00000225742 UGGT1Q9NYU2 1555 aa29.23■■■□□ 2.27
SMARCD2-201ENST00000225742 OSCARQ8IYS5 282 aa29.22■■■□□ 2.27
SMARCD2-201ENST00000225742 SETBP1Q9Y6X0 1596 aa29.22■■■□□ 2.27
SMARCD2-201ENST00000225742 MROH2AA6NES4 1674 aa29.22■■■□□ 2.27
SMARCD2-201ENST00000225742 HECW2Q9P2P5 1572 aa29.22■■■□□ 2.27
SMARCD2-201ENST00000225742 SBNO2Q9Y2G9 1366 aa29.2■■■□□ 2.27
SMARCD2-201ENST00000225742 SENP3-EIF4A1A0A087X0R7 540 aa29.2■■■□□ 2.27
SMARCD2-201ENST00000225742 FRMPD1Q5SYB0 1578 aa29.17■■■□□ 2.26
SMARCD2-201ENST00000225742 ADGRF5Q8IZF2 1346 aa29.17■■■□□ 2.26
SMARCD2-201ENST00000225742 ERVK-7P63135 1459 aa29.17■■■□□ 2.26
SMARCD2-201ENST00000225742 CFAP70Q5T0N1 1121 aa29.17■■■□□ 2.26
SMARCD2-201ENST00000225742 MSH5O43196 834 aa29.15■■■□□ 2.26
SMARCD2-201ENST00000225742 WDR43Q15061 677 aaKnown RBP eCLIP29.14■■■□□ 2.26
SMARCD2-201ENST00000225742 NEO1Q92859 1461 aa29.14■■■□□ 2.26
SMARCD2-201ENST00000225742 ADAMTS8Q9UP79 889 aa29.13■■■□□ 2.25
SMARCD2-201ENST00000225742 SALL2Q9Y467 1007 aaPredicted RBP29.13■■■□□ 2.25
SMARCD2-201ENST00000225742 PPLO60437 1756 aa29.13■■■□□ 2.25
SMARCD2-201ENST00000225742 RPGRIP1LQ68CZ1 1315 aa29.12■■■□□ 2.25
SMARCD2-201ENST00000225742 CDCA7LQ96GN5 454 aa29.11■■■□□ 2.25
SMARCD2-201ENST00000225742 NPATQ14207 1427 aa29.1■■■□□ 2.25
SMARCD2-201ENST00000225742 NOS1P29475 1434 aa29.09■■■□□ 2.25
SMARCD2-201ENST00000225742 ABCC3O15438 1527 aa29.08■■■□□ 2.25
SMARCD2-201ENST00000225742 EXOC6Q8TAG9 804 aa29.06■■■□□ 2.24
SMARCD2-201ENST00000225742 ZC3H13Q5T200 1668 aaKnown RBP29.04■■■□□ 2.24
SMARCD2-201ENST00000225742 CAMSAP1Q5T5Y3 1602 aa29.04■■■□□ 2.24
SMARCD2-201ENST00000225742 CENPJQ9HC77 1338 aaPredicted RBP29.03■■■□□ 2.24
SMARCD2-201ENST00000225742 C14orf93Q9H972 538 aaKnown RBP29.03■■■□□ 2.24
SMARCD2-201ENST00000225742 ZNF521Q96K83 1311 aa29.02■■■□□ 2.24
SMARCD2-201ENST00000225742 NGEFQ8N5V2 710 aa29.01■■■□□ 2.23
SMARCD2-201ENST00000225742 ERICH6Q7L0X2 663 aa29■■■□□ 2.23
SMARCD2-201ENST00000225742 ADGRB1O14514 1584 aa29■■■□□ 2.23
SMARCD2-201ENST00000225742 PIK3C2BO00750 1634 aa28.99■■■□□ 2.23
SMARCD2-201ENST00000225742 QRICH2Q9H0J4 1663 aa28.98■■■□□ 2.23
SMARCD2-201ENST00000225742 PLEKHH1Q9ULM0 1364 aa28.98■■■□□ 2.23
SMARCD2-201ENST00000225742 TCERG1O14776 1098 aaKnown RBP28.97■■■□□ 2.23
SMARCD2-201ENST00000225742 GGT6Q6P531 493 aa28.97■■■□□ 2.23
SMARCD2-201ENST00000225742 ARHGAP31Q2M1Z3 1444 aa28.96■■■□□ 2.23
SMARCD2-201ENST00000225742 CHGAP10645 457 aaKnown RBP28.96■■■□□ 2.23
SMARCD2-201ENST00000225742 GOLGA2Q08379 1002 aa28.96■■■□□ 2.23
SMARCD2-201ENST00000225742 DIP2CQ9Y2E4 1556 aa28.96■■■□□ 2.23
SMARCD2-201ENST00000225742 PUS7Q96PZ0 661 aaKnown RBP28.95■■■□□ 2.23
SMARCD2-201ENST00000225742 CARD14Q9BXL6 1004 aa28.94■■■□□ 2.22
SMARCD2-201ENST00000225742 DUSP27Q5VZP5 1158 aa28.94■■■□□ 2.22
SMARCD2-201ENST00000225742 USP32Q8NFA0 1604 aa28.93■■■□□ 2.22
SMARCD2-201ENST00000225742 CFAP65Q6ZU64 1925 aaKnown RBP28.93■■■□□ 2.22
SMARCD2-201ENST00000225742 POLR3AO14802 1390 aaPredicted RBP28.92■■■□□ 2.22
SMARCD2-201ENST00000225742 RICTORQ6R327 1708 aa28.91■■■□□ 2.22
SMARCD2-201ENST00000225742 SIGLEC1Q9BZZ2 1709 aa28.91■■■□□ 2.22
SMARCD2-201ENST00000225742 MS4A1P11836 297 aa28.9■■■□□ 2.22
SMARCD2-201ENST00000225742 SLFN5Q08AF3 891 aa28.89■■■□□ 2.22
SMARCD2-201ENST00000225742 TRMT2AQ8IZ69 625 aaKnown RBP28.89■■■□□ 2.22
SMARCD2-201ENST00000225742 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.87■■■□□ 2.21
SMARCD2-201ENST00000225742 VGFO15240 615 aaPredicted RBP28.87■■■□□ 2.21
SMARCD2-201ENST00000225742 NEXMIFQ5QGS0 1516 aa28.87■■■□□ 2.21
SMARCD2-201ENST00000225742 CRBNQ96SW2 442 aa28.86■■■□□ 2.21
SMARCD2-201ENST00000225742 GLI2P10070 1586 aa28.85■■■□□ 2.21
SMARCD2-201ENST00000225742 ZFYVE9O95405 1425 aa28.85■■■□□ 2.21
SMARCD2-201ENST00000225742 TRAK1Q9UPV9 953 aa28.85■■■□□ 2.21
SMARCD2-201ENST00000225742 ANP32AP39687 249 aaKnown RBP28.85■■■□□ 2.21
SMARCD2-201ENST00000225742 PLIN1O60240 522 aa28.84■■■□□ 2.21
SMARCD2-201ENST00000225742 NSD3Q9BZ95 1437 aa28.83■■■□□ 2.21
SMARCD2-201ENST00000225742 ARHGEF28Q8N1W1 1705 aaKnown RBP28.82■■■□□ 2.2
SMARCD2-201ENST00000225742 RAPGEF3O95398 923 aa28.81■■■□□ 2.2
SMARCD2-201ENST00000225742 E9PSI1 815 aa28.8■■■□□ 2.2
SMARCD2-201ENST00000225742 SLC52A1Q9NWF4 448 aa28.8■■■□□ 2.2
SMARCD2-201ENST00000225742 NOP58Q9Y2X3 529 aaKnown RBP28.8■■■□□ 2.2
SMARCD2-201ENST00000225742 NKTRP30414 1462 aaKnown RBP28.79■■■□□ 2.2
SMARCD2-201ENST00000225742 APAF1O14727 1248 aa28.78■■■□□ 2.2
SMARCD2-201ENST00000225742 MORC1Q86VD1 984 aa28.78■■■□□ 2.2
SMARCD2-201ENST00000225742 EVC2Q86UK5 1308 aa28.77■■■□□ 2.2
SMARCD2-201ENST00000225742 NSD2O96028 1365 aa28.77■■■□□ 2.2
SMARCD2-201ENST00000225742 CCDC146Q8IYE0 955 aa28.77■■■□□ 2.2
SMARCD2-201ENST00000225742 IPO9Q96P70 1041 aaKnown RBP28.76■■■□□ 2.19
SMARCD2-201ENST00000225742 SHPRHQ149N8 1683 aa28.75■■■□□ 2.19
SMARCD2-201ENST00000225742 TMEM132EQ6IEE7 984 aa28.75■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms