RNA–Protein interactions for RNA: ENST00000023939.8

RTFDC1-201, Transcript of Protein RTF2 homolog, humanhuman

TSL 2 BASIC

Gene RTFDC1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-201ENST00000023939 SYNMO15061 1565 aa19.77■□□□□ 0.76
RTFDC1-201ENST00000023939 SCAF11Q99590 1463 aaKnown RBP19.77■□□□□ 0.76
RTFDC1-201ENST00000023939 ARHGEF40Q8TER5 1519 aa19.76■□□□□ 0.75
RTFDC1-201ENST00000023939 PPLO60437 1756 aa19.72■□□□□ 0.75
RTFDC1-201ENST00000023939 ADGRF5Q8IZF2 1346 aa19.72■□□□□ 0.75
RTFDC1-201ENST00000023939 SLC52A1Q9NWF4 448 aa19.72■□□□□ 0.75
RTFDC1-201ENST00000023939 TRHP20396 242 aaPredicted RBP19.71■□□□□ 0.75
RTFDC1-201ENST00000023939 SETBP1Q9Y6X0 1596 aa19.71■□□□□ 0.75
RTFDC1-201ENST00000023939 PREX1Q8TCU6 1659 aa19.7■□□□□ 0.74
RTFDC1-201ENST00000023939 TMF1P82094 1093 aa19.7■□□□□ 0.74
RTFDC1-201ENST00000023939 EIF3AQ14152 1382 aaKnown RBP19.7■□□□□ 0.74
RTFDC1-201ENST00000023939 DISP3Q9P2K9 1392 aa19.69■□□□□ 0.74
RTFDC1-201ENST00000023939 PIK3C2GO75747 1445 aa19.69■□□□□ 0.74
RTFDC1-201ENST00000023939 KTN1Q86UP2 1357 aaKnown RBP19.68■□□□□ 0.74
RTFDC1-201ENST00000023939 POLR3GLQ9BT43 218 aa19.68■□□□□ 0.74
RTFDC1-201ENST00000023939 CFAP65Q6ZU64 1925 aaKnown RBP19.68■□□□□ 0.74
RTFDC1-201ENST00000023939 SLC24A1O60721 1099 aa19.68■□□□□ 0.74
RTFDC1-201ENST00000023939 GTF3C3Q9Y5Q9 886 aa19.68■□□□□ 0.74
RTFDC1-201ENST00000023939 ZFYVE9O95405 1425 aa19.67■□□□□ 0.74
RTFDC1-201ENST00000023939 CFAP70Q5T0N1 1121 aa19.66■□□□□ 0.74
RTFDC1-201ENST00000023939 ERVK-7P63135 1459 aa19.65■□□□□ 0.74
RTFDC1-201ENST00000023939 NEXMIFQ5QGS0 1516 aa19.65■□□□□ 0.74
RTFDC1-201ENST00000023939 CHGAP10645 457 aaKnown RBP19.65■□□□□ 0.74
RTFDC1-201ENST00000023939 IDI1Q13907 227 aa19.65■□□□□ 0.74
RTFDC1-201ENST00000023939 C14orf93Q9H972 538 aaKnown RBP19.65■□□□□ 0.74
RTFDC1-201ENST00000023939 CDCA8Q53HL2 280 aa19.63■□□□□ 0.73
RTFDC1-201ENST00000023939 MYO3AQ8NEV4 1616 aa19.62■□□□□ 0.73
RTFDC1-201ENST00000023939 TMEM131LA2VDJ0 1609 aa19.62■□□□□ 0.73
RTFDC1-201ENST00000023939 VGFO15240 615 aaPredicted RBP19.62■□□□□ 0.73
RTFDC1-201ENST00000023939 SBNO2Q9Y2G9 1366 aa19.62■□□□□ 0.73
RTFDC1-201ENST00000023939 ADGRB1O14514 1584 aa19.61■□□□□ 0.73
RTFDC1-201ENST00000023939 SPATA31D1Q6ZQQ2 1576 aa19.61■□□□□ 0.73
RTFDC1-201ENST00000023939 PER1O15534 1290 aaPredicted RBP19.6■□□□□ 0.73
RTFDC1-201ENST00000023939 CLTCQ00610 1675 aaKnown RBP19.6■□□□□ 0.73
RTFDC1-201ENST00000023939 RALBP1Q15311 655 aa19.59■□□□□ 0.73
RTFDC1-201ENST00000023939 CCDC184Q52MB2 194 aa19.59■□□□□ 0.73
RTFDC1-201ENST00000023939 MRS2Q9HD23 443 aa19.59■□□□□ 0.73
RTFDC1-201ENST00000023939 FBXO31Q5XUX0 539 aaPredicted RBP19.56■□□□□ 0.72
RTFDC1-201ENST00000023939 PARD3Q8TEW0 1356 aa19.55■□□□□ 0.72
RTFDC1-201ENST00000023939 MYBBP1AQ9BQG0 1328 aaKnown RBP19.53■□□□□ 0.72
RTFDC1-201ENST00000023939 PANK3Q9H999 370 aa19.52■□□□□ 0.72
RTFDC1-201ENST00000023939 BRD4O60885 1362 aaPredicted RBP19.52■□□□□ 0.72
RTFDC1-201ENST00000023939 KDM5AP29375 1690 aaKnown RBP19.52■□□□□ 0.71
RTFDC1-201ENST00000023939 MYO5BQ9ULV0 1848 aa19.51■□□□□ 0.71
RTFDC1-201ENST00000023939 CENPJQ9HC77 1338 aaPredicted RBP19.51■□□□□ 0.71
RTFDC1-201ENST00000023939 ZMYM3Q14202 1370 aa19.5■□□□□ 0.71
RTFDC1-201ENST00000023939 HNRNPUQ00839 825 aaKnown RBP eCLIP19.49■□□□□ 0.71
RTFDC1-201ENST00000023939 MYOM1P52179 1685 aa19.49■□□□□ 0.71
RTFDC1-201ENST00000023939 A2ML1A8K2U0 1454 aa19.49■□□□□ 0.71
RTFDC1-201ENST00000023939 MLECQ14165 292 aa19.48■□□□□ 0.71
RTFDC1-201ENST00000023939 NPC1L1Q9UHC9 1359 aa19.46■□□□□ 0.71
RTFDC1-201ENST00000023939 ESF1Q9H501 851 aaKnown RBP19.46■□□□□ 0.71
RTFDC1-201ENST00000023939 NLRP13Q86W25 1043 aa19.45■□□□□ 0.7
RTFDC1-201ENST00000023939 FAM9BQ8IZU0 186 aa19.45■□□□□ 0.7
RTFDC1-201ENST00000023939 PNISRQ8TF01 805 aaKnown RBP19.45■□□□□ 0.7
RTFDC1-201ENST00000023939 PUS7Q96PZ0 661 aaKnown RBP19.45■□□□□ 0.7
RTFDC1-201ENST00000023939 QRICH2Q9H0J4 1663 aa19.45■□□□□ 0.7
RTFDC1-201ENST00000023939 ASXL1Q8IXJ9 1541 aa19.45■□□□□ 0.7
RTFDC1-201ENST00000023939 TMEM132EQ6IEE7 984 aa19.45■□□□□ 0.7
RTFDC1-201ENST00000023939 TRAK1Q9UPV9 953 aa19.45■□□□□ 0.7
RTFDC1-201ENST00000023939 TMC1Q8TDI8 760 aa19.44■□□□□ 0.7
RTFDC1-201ENST00000023939 ARHGEF28Q8N1W1 1705 aaKnown RBP19.44■□□□□ 0.7
RTFDC1-201ENST00000023939 LRPPRCP42704 1394 aaKnown RBP19.43■□□□□ 0.7
RTFDC1-201ENST00000023939 NUTM2DQ5VT03 806 aaPredicted RBP19.42■□□□□ 0.7
RTFDC1-201ENST00000023939 STAG3Q9UJ98 1225 aa19.42■□□□□ 0.7
RTFDC1-201ENST00000023939 ZBED9Q6R2W3 1325 aa19.42■□□□□ 0.7
RTFDC1-201ENST00000023939 AMER1Q5JTC6 1135 aaPredicted RBP19.41■□□□□ 0.7
RTFDC1-201ENST00000023939 KNSTRNQ9Y448 316 aa19.41■□□□□ 0.7
RTFDC1-201ENST00000023939 ALKQ9UM73 1620 aa19.4■□□□□ 0.7
RTFDC1-201ENST00000023939 RIMS2Q9UQ26 1411 aa19.4■□□□□ 0.7
RTFDC1-201ENST00000023939 TNRQ92752 1358 aa19.4■□□□□ 0.7
RTFDC1-201ENST00000023939 INSRP06213 1382 aa19.39■□□□□ 0.69
RTFDC1-201ENST00000023939 CNGB1Q14028 1251 aaPredicted RBP19.39■□□□□ 0.69
RTFDC1-201ENST00000023939 CC2D1BQ5T0F9 858 aaKnown RBP19.37■□□□□ 0.69
RTFDC1-201ENST00000023939 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.37■□□□□ 0.69
RTFDC1-201ENST00000023939 YTHDC2Q9H6S0 1430 aaKnown RBP19.37■□□□□ 0.69
RTFDC1-201ENST00000023939 PTPRMP28827 1452 aa19.37■□□□□ 0.69
RTFDC1-201ENST00000023939 EVC2Q86UK5 1308 aa19.35■□□□□ 0.69
RTFDC1-201ENST00000023939 DLC1Q96QB1 1528 aa19.34■□□□□ 0.69
RTFDC1-201ENST00000023939 TULP4Q9NRJ4 1543 aa19.34■□□□□ 0.69
RTFDC1-201ENST00000023939 SETD1AO15047 1707 aaKnown RBP19.33■□□□□ 0.69
RTFDC1-201ENST00000023939 NLRP1Q9C000 1473 aa19.33■□□□□ 0.69
RTFDC1-201ENST00000023939 HDGFP51858 240 aaKnown RBP19.33■□□□□ 0.68
RTFDC1-201ENST00000023939 NINLQ9Y2I6 1382 aa19.31■□□□□ 0.68
RTFDC1-201ENST00000023939 UBR1Q8IWV7 1749 aa19.31■□□□□ 0.68
RTFDC1-201ENST00000023939 CARD14Q9BXL6 1004 aa19.31■□□□□ 0.68
RTFDC1-201ENST00000023939 NRXN3Q9Y4C0 1643 aa19.3■□□□□ 0.68
RTFDC1-201ENST00000023939 TMEM2Q9UHN6 1383 aa19.29■□□□□ 0.68
RTFDC1-201ENST00000023939 USP32Q8NFA0 1604 aa19.29■□□□□ 0.68
RTFDC1-201ENST00000023939 ABCC11Q96J66 1382 aa19.29■□□□□ 0.68
RTFDC1-201ENST00000023939 PPP2R1AP30153 589 aa19.28■□□□□ 0.68
RTFDC1-201ENST00000023939 SUPT16HQ9Y5B9 1047 aaKnown RBP19.28■□□□□ 0.68
RTFDC1-201ENST00000023939 STK26Q9P289 416 aa19.27■□□□□ 0.68
RTFDC1-201ENST00000023939 C3P01024 1663 aa19.26■□□□□ 0.67
RTFDC1-201ENST00000023939 PRAM1Q96QH2 718 aa19.25■□□□□ 0.67
RTFDC1-201ENST00000023939 FER1L4A9Z1Z3 1794 aa19.25■□□□□ 0.67
RTFDC1-201ENST00000023939 PHF23Q9BUL5 403 aaPredicted RBP19.25■□□□□ 0.67
RTFDC1-201ENST00000023939 SLC12A5Q9H2X9 1139 aa19.25■□□□□ 0.67
RTFDC1-201ENST00000023939 ANKRD36BQ8N2N9 1353 aa19.25■□□□□ 0.67
RTFDC1-201ENST00000023939 BLMP54132 1417 aaPredicted RBP19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms