RNA–Protein interactions for RNA: ENSMUST00000173369.1

Trim39-205, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

TSL 1 (best) BASIC

Gene Trim39, Length 2,914 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-205ENSMUST00000173369 GphnQ8BUV3 769 aaKnown RBP11.97□□□□□ -0.49
Trim39-205ENSMUST00000173369 Talpid3E9PV87 1520 aa11.96□□□□□ -0.5
Trim39-205ENSMUST00000173369 Ecm2Q5FW85 670 aa11.96□□□□□ -0.5
Trim39-205ENSMUST00000173369 Q9D9H8 365 aa11.96□□□□□ -0.5
Trim39-205ENSMUST00000173369 Akap12Q9WTQ5 1684 aa11.95□□□□□ -0.5
Trim39-205ENSMUST00000173369 Adgrb3Q80ZF8 1522 aa11.95□□□□□ -0.5
Trim39-205ENSMUST00000173369 IghaA0A0A6YXW6 389 aa11.95□□□□□ -0.5
Trim39-205ENSMUST00000173369 AatkQ80YE4 1365 aa11.94□□□□□ -0.5
Trim39-205ENSMUST00000173369 Vsig10D3YX43 558 aa11.94□□□□□ -0.5
Trim39-205ENSMUST00000173369 Stk26Q99JT2 416 aa11.94□□□□□ -0.5
Trim39-205ENSMUST00000173369 Dip2bQ3UH60 1574 aa11.94□□□□□ -0.5
Trim39-205ENSMUST00000173369 TonslQ6NZL6 1363 aa11.94□□□□□ -0.5
Trim39-205ENSMUST00000173369 Tmem131lQ3U3D7 1597 aa11.93□□□□□ -0.5
Trim39-205ENSMUST00000173369 Fan1Q69ZT1 1020 aa11.93□□□□□ -0.5
Trim39-205ENSMUST00000173369 Shq1Q7TMX5 569 aa11.93□□□□□ -0.5
Trim39-205ENSMUST00000173369 AcrbpQ3V140 540 aa11.92□□□□□ -0.5
Trim39-205ENSMUST00000173369 Med14A2ABV5 1459 aaKnown RBP11.92□□□□□ -0.5
Trim39-205ENSMUST00000173369 Prrc2bQ7TPM1 1486 aaKnown RBP11.92□□□□□ -0.5
Trim39-205ENSMUST00000173369 Abcc6Q9R1S7 1498 aa11.92□□□□□ -0.5
Trim39-205ENSMUST00000173369 AU022751B1B0V2 589 aa11.92□□□□□ -0.5
Trim39-205ENSMUST00000173369 PrkcshO08795 521 aa11.91□□□□□ -0.5
Trim39-205ENSMUST00000173369 Ankrd36D3Z4K0 1415 aa11.91□□□□□ -0.5
Trim39-205ENSMUST00000173369 NefmP08553 848 aa11.9□□□□□ -0.5
Trim39-205ENSMUST00000173369 Dot1lQ6XZL8 1540 aa11.9□□□□□ -0.5
Trim39-205ENSMUST00000173369 Topaz1E5FYH1 1653 aa11.9□□□□□ -0.5
Trim39-205ENSMUST00000173369 Naip7Q9JIB3 1402 aa11.9□□□□□ -0.5
Trim39-205ENSMUST00000173369 Pik3c2gO70167 1506 aa11.9□□□□□ -0.5
Trim39-205ENSMUST00000173369 Iqgap3F8VQ29 1632 aa11.9□□□□□ -0.51
Trim39-205ENSMUST00000173369 Lamc1P02468 1607 aaKnown RBP11.89□□□□□ -0.51
Trim39-205ENSMUST00000173369 Efcab6Q6P1E8 1516 aa11.89□□□□□ -0.51
Trim39-205ENSMUST00000173369 Adamts7Q68SA9 1657 aa11.89□□□□□ -0.51
Trim39-205ENSMUST00000173369 Rprd2Q6NXI6 1469 aaKnown RBP11.88□□□□□ -0.51
Trim39-205ENSMUST00000173369 Scn4aQ9ER60 1841 aa11.88□□□□□ -0.51
Trim39-205ENSMUST00000173369 Srpk2O54781 681 aaKnown RBP11.87□□□□□ -0.51
Trim39-205ENSMUST00000173369 Kif13aQ9EQW7 1749 aa11.87□□□□□ -0.51
Trim39-205ENSMUST00000173369 1700123L14RikQ3V2K7 440 aa11.87□□□□□ -0.51
Trim39-205ENSMUST00000173369 Gm20521D3Z5F7 333 aa11.86□□□□□ -0.51
Trim39-205ENSMUST00000173369 Scaf11E9PZM7 1456 aaKnown RBP11.85□□□□□ -0.51
Trim39-205ENSMUST00000173369 Slc24a1Q91WD8 1130 aa11.84□□□□□ -0.51
Trim39-205ENSMUST00000173369 Ino80Q6ZPV2 1559 aa11.84□□□□□ -0.51
Trim39-205ENSMUST00000173369 Dip2aQ8BWT5 1523 aa11.84□□□□□ -0.51
Trim39-205ENSMUST00000173369 HnrnpmQ9D0E1 729 aaKnown RBP11.83□□□□□ -0.51
Trim39-205ENSMUST00000173369 Kif21bQ9QXL1 1668 aa11.83□□□□□ -0.52
Trim39-205ENSMUST00000173369 Itsn1Q9Z0R4 1714 aa11.83□□□□□ -0.52
Trim39-205ENSMUST00000173369 Tshz2Q68FE9 1030 aa11.83□□□□□ -0.52
Trim39-205ENSMUST00000173369 Utp14aQ640M1 767 aaKnown RBP11.82□□□□□ -0.52
Trim39-205ENSMUST00000173369 Puf60Q3UEB3 564 aaKnown RBP11.81□□□□□ -0.52
Trim39-205ENSMUST00000173369 Rapgef3Q8VCC8 918 aa11.81□□□□□ -0.52
Trim39-205ENSMUST00000173369 Tulp4Q9JIL5 1547 aa11.8□□□□□ -0.52
Trim39-205ENSMUST00000173369 Tecpr2Q3UH45 1423 aa11.8□□□□□ -0.52
Trim39-205ENSMUST00000173369 Rundc1Q0VDN7 615 aa11.8□□□□□ -0.52
Trim39-205ENSMUST00000173369 Sin3aQ60520 1274 aaKnown RBP11.8□□□□□ -0.52
Trim39-205ENSMUST00000173369 Hdac5Q9Z2V6 1113 aa11.8□□□□□ -0.52
Trim39-205ENSMUST00000173369 Bcl9Q9D219 1425 aa11.8□□□□□ -0.52
Trim39-205ENSMUST00000173369 Abca8aQ8K442 1620 aa11.8□□□□□ -0.52
Trim39-205ENSMUST00000173369 Mroh1E0CZ22 1640 aa11.79□□□□□ -0.52
Trim39-205ENSMUST00000173369 Rock1P70335 1354 aa11.79□□□□□ -0.52
Trim39-205ENSMUST00000173369 Chd2E9PZM4 1827 aaKnown RBP11.78□□□□□ -0.52
Trim39-205ENSMUST00000173369 Rims2Q9EQZ7 1530 aa11.78□□□□□ -0.52
Trim39-205ENSMUST00000173369 Adamts13Q769J6 1426 aa11.78□□□□□ -0.52
Trim39-205ENSMUST00000173369 Bcl11bQ99PV8 884 aa11.78□□□□□ -0.52
Trim39-205ENSMUST00000173369 Cdk13Q69ZA1 1511 aaKnown RBP11.78□□□□□ -0.52
Trim39-205ENSMUST00000173369 Evi5lH3BKQ3 813 aa11.77□□□□□ -0.52
Trim39-205ENSMUST00000173369 Stag3O70576 1240 aa11.77□□□□□ -0.52
Trim39-205ENSMUST00000173369 Ncoa1P70365 1447 aa11.77□□□□□ -0.53
Trim39-205ENSMUST00000173369 Zranb1Q7M760 708 aa11.77□□□□□ -0.53
Trim39-205ENSMUST00000173369 Usp40Q8BWR4 1235 aa11.77□□□□□ -0.53
Trim39-205ENSMUST00000173369 Prdm2A2A7B5 1709 aaKnown RBP11.77□□□□□ -0.53
Trim39-205ENSMUST00000173369 Ehbp1l1Q99MS7 1716 aa11.77□□□□□ -0.53
Trim39-205ENSMUST00000173369 Znf316Q6PGE4 1016 aa11.76□□□□□ -0.53
Trim39-205ENSMUST00000173369 Myo3aQ8K3H5 1613 aa11.76□□□□□ -0.53
Trim39-205ENSMUST00000173369 Card11Q8CIS0 1159 aa11.76□□□□□ -0.53
Trim39-205ENSMUST00000173369 Ltbp4Q8K4G1 1666 aa11.76□□□□□ -0.53
Trim39-205ENSMUST00000173369 Mink1Q9JM52 1308 aa11.75□□□□□ -0.53
Trim39-205ENSMUST00000173369 Rtn4Q99P72 1162 aaKnown RBP11.75□□□□□ -0.53
Trim39-205ENSMUST00000173369 Tmem94Q7TSH8 1360 aa11.75□□□□□ -0.53
Trim39-205ENSMUST00000173369 NgefQ8CHT1 710 aa11.75□□□□□ -0.53
Trim39-205ENSMUST00000173369 Ppip5k1A2ARP1 1436 aa11.75□□□□□ -0.53
Trim39-205ENSMUST00000173369 Sox12Q04890 314 aa11.74□□□□□ -0.53
Trim39-205ENSMUST00000173369 Rimbp3Q3V0F0 1606 aa11.74□□□□□ -0.53
Trim39-205ENSMUST00000173369 Dapk1Q80YE7 1442 aa11.74□□□□□ -0.53
Trim39-205ENSMUST00000173369 Mug2P28666 1451 aa11.73□□□□□ -0.53
Trim39-205ENSMUST00000173369 Cnga1P29974 684 aa11.73□□□□□ -0.53
Trim39-205ENSMUST00000173369 Amigo3Q8C2S7 508 aa11.73□□□□□ -0.53
Trim39-205ENSMUST00000173369 Uggt1Q6P5E4 1551 aa11.72□□□□□ -0.53
Trim39-205ENSMUST00000173369 Wdr66E9Q743 1299 aa11.72□□□□□ -0.53
Trim39-205ENSMUST00000173369 Aebp2Q9Z248 504 aaKnown RBP11.72□□□□□ -0.53
Trim39-205ENSMUST00000173369 Srcin1Q9QWI6 1250 aa11.71□□□□□ -0.54
Trim39-205ENSMUST00000173369 Atp2b2Q9R0K7 1198 aa11.7□□□□□ -0.54
Trim39-205ENSMUST00000173369 Rims1Q99NE5 1463 aa11.7□□□□□ -0.54
Trim39-205ENSMUST00000173369 IqubQ8CDK3 788 aa11.7□□□□□ -0.54
Trim39-205ENSMUST00000173369 Slain2Q8CI08 581 aa11.7□□□□□ -0.54
Trim39-205ENSMUST00000173369 Gtf2e1Q9D0D5 440 aa11.69□□□□□ -0.54
Trim39-205ENSMUST00000173369 Slc52a2Q9D8F3 450 aa11.69□□□□□ -0.54
Trim39-205ENSMUST00000173369 Polr3aB2RXC6 1390 aa11.69□□□□□ -0.54
Trim39-205ENSMUST00000173369 PzpQ61838 1495 aa11.68□□□□□ -0.54
Trim39-205ENSMUST00000173369 Cep170bQ80U49 1574 aa11.68□□□□□ -0.54
Trim39-205ENSMUST00000173369 Eif2ak4Q9QZ05 1648 aa11.68□□□□□ -0.54
Trim39-205ENSMUST00000173369 Nlrp6Q91WS2 869 aa11.68□□□□□ -0.54
Trim39-205ENSMUST00000173369 PplQ9R269 1755 aa11.67□□□□□ -0.54
Retrieved 100 of 22,080 RNA–protein pairs in 27.3 ms