RNA–Protein interactions for RNA: ENSMUST00000109477.1

Ccdc88a-202, Transcript of Girdin, mousemouse

TSL 2 BASIC

Gene Ccdc88a, Length 1,716 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-202ENSMUST00000109477 Ehbp1l1Q99MS7 1716 aa29.83■■■□□ 2.37
Ccdc88a-202ENSMUST00000109477 Adamts13Q769J6 1426 aa29.83■■■□□ 2.37
Ccdc88a-202ENSMUST00000109477 Skint5A7XUY5 1461 aa29.83■■■□□ 2.37
Ccdc88a-202ENSMUST00000109477 Adgrb3Q80ZF8 1522 aa29.82■■■□□ 2.36
Ccdc88a-202ENSMUST00000109477 Ercc6l2Q9JIM3 1537 aa29.82■■■□□ 2.36
Ccdc88a-202ENSMUST00000109477 Tulp4Q9JIL5 1547 aa29.81■■■□□ 2.36
Ccdc88a-202ENSMUST00000109477 Bcl9Q9D219 1425 aa29.81■■■□□ 2.36
Ccdc88a-202ENSMUST00000109477 Efcab6Q6P1E8 1516 aa29.8■■■□□ 2.36
Ccdc88a-202ENSMUST00000109477 Ahdc1Q6PAL7 1594 aaKnown RBP29.8■■■□□ 2.36
Ccdc88a-202ENSMUST00000109477 Stk24Q99KH8 431 aa29.79■■■□□ 2.36
Ccdc88a-202ENSMUST00000109477 RalgapbQ8BQZ4 1484 aa29.77■■■□□ 2.36
Ccdc88a-202ENSMUST00000109477 Sall3Q62255 1320 aa29.77■■■□□ 2.36
Ccdc88a-202ENSMUST00000109477 Rundc1Q0VDN7 615 aa29.75■■■□□ 2.35
Ccdc88a-202ENSMUST00000109477 Sin3aQ60520 1274 aaKnown RBP29.74■■■□□ 2.35
Ccdc88a-202ENSMUST00000109477 Ifit1bl1D3Z6F0 470 aa29.74■■■□□ 2.35
Ccdc88a-202ENSMUST00000109477 Uggt1Q6P5E4 1551 aa29.73■■■□□ 2.35
Ccdc88a-202ENSMUST00000109477 Card11Q8CIS0 1159 aa29.71■■■□□ 2.35
Ccdc88a-202ENSMUST00000109477 AatkQ80YE4 1365 aa29.7■■■□□ 2.34
Ccdc88a-202ENSMUST00000109477 Topaz1E5FYH1 1653 aa29.68■■■□□ 2.34
Ccdc88a-202ENSMUST00000109477 Cep152A2AUM9 1736 aaKnown RBP29.68■■■□□ 2.34
Ccdc88a-202ENSMUST00000109477 Kif13aQ9EQW7 1749 aa29.67■■■□□ 2.34
Ccdc88a-202ENSMUST00000109477 Itsn1Q9Z0R4 1714 aa29.67■■■□□ 2.34
Ccdc88a-202ENSMUST00000109477 Chd2E9PZM4 1827 aaKnown RBP29.67■■■□□ 2.34
Ccdc88a-202ENSMUST00000109477 Ncoa1P70365 1447 aa29.66■■■□□ 2.34
Ccdc88a-202ENSMUST00000109477 Cwc22Q8C5N3 908 aaKnown RBP29.65■■■□□ 2.34
Ccdc88a-202ENSMUST00000109477 Kdm5aQ3UXZ9 1690 aa29.64■■■□□ 2.34
Ccdc88a-202ENSMUST00000109477 Mroh1E0CZ22 1640 aa29.63■■■□□ 2.33
Ccdc88a-202ENSMUST00000109477 Naip7Q9JIB3 1402 aa29.63■■■□□ 2.33
Ccdc88a-202ENSMUST00000109477 Rims1Q99NE5 1463 aa29.61■■■□□ 2.33
Ccdc88a-202ENSMUST00000109477 GphnQ8BUV3 769 aaKnown RBP29.6■■■□□ 2.33
Ccdc88a-202ENSMUST00000109477 Prrc2bQ7TPM1 1486 aaKnown RBP29.58■■■□□ 2.33
Ccdc88a-202ENSMUST00000109477 Plxnc1Q9QZC2 1574 aa29.57■■■□□ 2.32
Ccdc88a-202ENSMUST00000109477 Cyb5rlB1AS42 316 aa29.53■■■□□ 2.32
Ccdc88a-202ENSMUST00000109477 Myo3aQ8K3H5 1613 aa29.51■■■□□ 2.32
Ccdc88a-202ENSMUST00000109477 Setd1aE9PYH6 1716 aa29.51■■■□□ 2.31
Ccdc88a-202ENSMUST00000109477 Kdm2aP59997 1161 aa29.51■■■□□ 2.31
Ccdc88a-202ENSMUST00000109477 Rock2P70336 1388 aa29.51■■■□□ 2.31
Ccdc88a-202ENSMUST00000109477 AU022751B1B0V2 589 aa29.5■■■□□ 2.31
Ccdc88a-202ENSMUST00000109477 Cdk5rap2Q8K389 1822 aa29.5■■■□□ 2.31
Ccdc88a-202ENSMUST00000109477 Txndc2Q6P902 515 aa29.48■■■□□ 2.31
Ccdc88a-202ENSMUST00000109477 Mapk8ip2Q9ERE9 830 aa29.48■■■□□ 2.31
Ccdc88a-202ENSMUST00000109477 Myom1Q62234 1667 aaKnown RBP29.46■■■□□ 2.31
Ccdc88a-202ENSMUST00000109477 Os9Q8K2C7 672 aa29.45■■■□□ 2.31
Ccdc88a-202ENSMUST00000109477 Gemin5Q8BX17 1502 aaKnown RBP29.45■■■□□ 2.31
Ccdc88a-202ENSMUST00000109477 Srpk2O54781 681 aaKnown RBP29.45■■■□□ 2.3
Ccdc88a-202ENSMUST00000109477 Gm20521D3Z5F7 333 aa29.44■■■□□ 2.3
Ccdc88a-202ENSMUST00000109477 Dip2aQ8BWT5 1523 aa29.43■■■□□ 2.3
Ccdc88a-202ENSMUST00000109477 P3h3Q8CG70 732 aa29.42■■■□□ 2.3
Ccdc88a-202ENSMUST00000109477 Arid4bA2CG63 1314 aaKnown RBP29.41■■■□□ 2.3
Ccdc88a-202ENSMUST00000109477 Rimbp3Q3V0F0 1606 aa29.41■■■□□ 2.3
Ccdc88a-202ENSMUST00000109477 Sipa1l1Q8C0T5 1782 aa29.4■■■□□ 2.3
Ccdc88a-202ENSMUST00000109477 Zc3h13E9Q784 1729 aaKnown RBP29.4■■■□□ 2.3
Ccdc88a-202ENSMUST00000109477 Psme1P97371 249 aa29.4■■■□□ 2.3
Ccdc88a-202ENSMUST00000109477 PplQ9R269 1755 aa29.39■■■□□ 2.3
Ccdc88a-202ENSMUST00000109477 Plekhg5Q66T02 1073 aa29.39■■■□□ 2.3
Ccdc88a-202ENSMUST00000109477 Scaf11E9PZM7 1456 aaKnown RBP29.38■■■□□ 2.29
Ccdc88a-202ENSMUST00000109477 Fan1Q69ZT1 1020 aa29.37■■■□□ 2.29
Ccdc88a-202ENSMUST00000109477 Scn4aQ9ER60 1841 aa29.35■■■□□ 2.29
Ccdc88a-202ENSMUST00000109477 Stard8Q8K031 1019 aa29.34■■■□□ 2.29
Ccdc88a-202ENSMUST00000109477 Srcin1Q9QWI6 1250 aa29.34■■■□□ 2.29
Ccdc88a-202ENSMUST00000109477 Pola1P33609 1465 aa29.33■■■□□ 2.29
Ccdc88a-202ENSMUST00000109477 DnmbpQ6TXD4 1580 aa29.32■■■□□ 2.28
Ccdc88a-202ENSMUST00000109477 Slc52a2Q9D8F3 450 aa29.32■■■□□ 2.28
Ccdc88a-202ENSMUST00000109477 Nphp4P59240 1425 aa29.31■■■□□ 2.28
Ccdc88a-202ENSMUST00000109477 Gm13695A2AK44 830 aa29.31■■■□□ 2.28
Ccdc88a-202ENSMUST00000109477 Eif2ak4Q9QZ05 1648 aa29.3■■■□□ 2.28
Ccdc88a-202ENSMUST00000109477 IghaA0A0A6YXW6 389 aa29.3■■■□□ 2.28
Ccdc88a-202ENSMUST00000109477 Puf60Q3UEB3 564 aaKnown RBP29.29■■■□□ 2.28
Ccdc88a-202ENSMUST00000109477 Atp1b4Q99ME6 356 aa29.29■■■□□ 2.28
Ccdc88a-202ENSMUST00000109477 Rims2Q9EQZ7 1530 aa29.29■■■□□ 2.28
Ccdc88a-202ENSMUST00000109477 Phlpp1Q8CHE4 1687 aa29.29■■■□□ 2.28
Ccdc88a-202ENSMUST00000109477 Itsn2Q9Z0R6 1659 aa29.29■■■□□ 2.28
Ccdc88a-202ENSMUST00000109477 Zbtb4Q5F293 982 aa29.28■■■□□ 2.28
Ccdc88a-202ENSMUST00000109477 PalldQ9ET54 1408 aa29.28■■■□□ 2.28
Ccdc88a-202ENSMUST00000109477 Lmtk3Q5XJV6 1424 aa29.27■■■□□ 2.28
Ccdc88a-202ENSMUST00000109477 Arhgef28P97433 1693 aa29.27■■■□□ 2.28
Ccdc88a-202ENSMUST00000109477 Shq1Q7TMX5 569 aa29.26■■■□□ 2.27
Ccdc88a-202ENSMUST00000109477 Usp40Q8BWR4 1235 aa29.26■■■□□ 2.27
Ccdc88a-202ENSMUST00000109477 Lrrc7Q80TE7 1490 aa29.25■■■□□ 2.27
Ccdc88a-202ENSMUST00000109477 Gtf2e1Q9D0D5 440 aa29.25■■■□□ 2.27
Ccdc88a-202ENSMUST00000109477 Q9D9H8 365 aa29.24■■■□□ 2.27
Ccdc88a-202ENSMUST00000109477 Ift172Q6VH22 1749 aa29.23■■■□□ 2.27
Ccdc88a-202ENSMUST00000109477 Asxl2Q8BZ32 1370 aa29.23■■■□□ 2.27
Ccdc88a-202ENSMUST00000109477 Smg6P61406 1418 aaKnown RBP29.22■■■□□ 2.27
Ccdc88a-202ENSMUST00000109477 Slit3Q9WVB4 1523 aa29.21■■■□□ 2.27
Ccdc88a-202ENSMUST00000109477 Tubgcp6G5E8P0 1769 aa29.19■■■□□ 2.26
Ccdc88a-202ENSMUST00000109477 Ltbp4Q8K4G1 1666 aa29.18■■■□□ 2.26
Ccdc88a-202ENSMUST00000109477 Pip4k2bQ80XI4 416 aa29.18■■■□□ 2.26
Ccdc88a-202ENSMUST00000109477 Nop58Q6DFW4 536 aaKnown RBP29.17■■■□□ 2.26
Ccdc88a-202ENSMUST00000109477 Slc24a1Q91WD8 1130 aa29.17■■■□□ 2.26
Ccdc88a-202ENSMUST00000109477 MaddQ80U28 1577 aa29.16■■■□□ 2.26
Ccdc88a-202ENSMUST00000109477 PzpQ61838 1495 aa29.13■■■□□ 2.25
Ccdc88a-202ENSMUST00000109477 IqubQ8CDK3 788 aa29.12■■■□□ 2.25
Ccdc88a-202ENSMUST00000109477 Nrxn3Q6P9K9 1571 aa29.11■■■□□ 2.25
Ccdc88a-202ENSMUST00000109477 Sbno1Q689Z5 1390 aa29.11■■■□□ 2.25
Ccdc88a-202ENSMUST00000109477 Med1Q925J9 1575 aa29.1■■■□□ 2.25
Ccdc88a-202ENSMUST00000109477 Stag3O70576 1240 aa29.08■■■□□ 2.25
Ccdc88a-202ENSMUST00000109477 Rapgef3Q8VCC8 918 aa29.08■■■□□ 2.25
Ccdc88a-202ENSMUST00000109477 Pik3r4Q8VD65 1358 aa29.06■■■□□ 2.24
Ccdc88a-202ENSMUST00000109477 Stk26Q99JT2 416 aa29.03■■■□□ 2.24
Retrieved 100 of 22,080 RNA–protein pairs in 15.2 ms