RNA–Protein interactions for RNA: YDR049W

VMS1, Transcript of Component of a Cdc48p-complex involved in protein quality control, yeast

Gene VMS1, Length 1,899 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMS1	YDR049W	TRS65	P32893	560 aa		4.91	□□□□□ -1.62
VMS1	YDR049W	MRPL39	P36533	70 aa		4.91	□□□□□ -1.62
VMS1	YDR049W	PET8	P38921	284 aa		4.91	□□□□□ -1.62
VMS1	YDR049W	MIT1	P40002	666 aa		4.91	□□□□□ -1.62
VMS1	YDR049W	AYR1	P40471	297 aa		4.91	□□□□□ -1.62
VMS1	YDR049W	SER2	P42941	309 aa		4.91	□□□□□ -1.62
VMS1	YDR049W	SDT1	P53078	280 aa		4.91	□□□□□ -1.62
VMS1	YDR049W	SNO2	P53823	222 aa		4.91	□□□□□ -1.62
VMS1	YDR049W	ATG39	Q06159	398 aa		4.91	□□□□□ -1.62
VMS1	YDR049W	FRE8	Q12209	686 aa		4.91	□□□□□ -1.62
VMS1	YDR049W	YLR099W-A	Q3E798	87 aa		4.91	□□□□□ -1.62
VMS1	YDR049W	SEC7	P11075	2009 aa	Known RBP	4.91	□□□□□ -1.62
VMS1	YDR049W	HAP1	P0CE41	1502 aa		4.91	□□□□□ -1.62
VMS1	YDR049W	IPP1	P00817	287 aa	Known RBP	4.9	□□□□□ -1.62
VMS1	YDR049W	ERD2	P18414	219 aa		4.9	□□□□□ -1.62
VMS1	YDR049W	PHA2	P32452	334 aa		4.9	□□□□□ -1.62
VMS1	YDR049W	NAT2	P37293	288 aa		4.9	□□□□□ -1.62
VMS1	YDR049W	AVT5	P38176	459 aa		4.9	□□□□□ -1.62
VMS1	YDR049W	LEU5	P38702	357 aa		4.9	□□□□□ -1.62
VMS1	YDR049W	CHL4	P38907	458 aa		4.9	□□□□□ -1.62
VMS1	YDR049W	PEX17	P40155	199 aa		4.9	□□□□□ -1.62
VMS1	YDR049W	MNN5	P46982	586 aa		4.9	□□□□□ -1.62
VMS1	YDR049W	RPS12	P48589	143 aa	Known RBP	4.9	□□□□□ -1.62
VMS1	YDR049W	HHT1	P61830	136 aa		4.9	□□□□□ -1.62
VMS1	YDR049W	ERP1	Q05359	219 aa	Known RBP	4.9	□□□□□ -1.62
VMS1	YDR049W	YDL177C	Q12257	170 aa		4.9	□□□□□ -1.62
VMS1	YDR049W	HTZ1	Q12692	134 aa	Known RBP	4.9	□□□□□ -1.62
VMS1	YDR049W	CHC1	P22137	1653 aa	Known RBP	4.9	□□□□□ -1.62
VMS1	YDR049W	ILV6	P25605	309 aa	Known RBP	4.9	□□□□□ -1.63
VMS1	YDR049W	RPL16A	P26784	199 aa	Known RBP	4.9	□□□□□ -1.63
VMS1	YDR049W	PRY2	P36110	329 aa		4.9	□□□□□ -1.63
VMS1	YDR049W	YMC2	P38087	329 aa		4.9	□□□□□ -1.63
VMS1	YDR049W	PAN6	P40459	309 aa		4.9	□□□□□ -1.63
VMS1	YDR049W	BUD13	P46947	266 aa	Predicted RBP	4.9	□□□□□ -1.63
VMS1	YDR049W	YNR014W	P53719	212 aa		4.9	□□□□□ -1.63
VMS1	YDR049W	TMA23	Q03525	211 aa		4.9	□□□□□ -1.63
VMS1	YDR049W	YOL160W	Q08321	113 aa		4.9	□□□□□ -1.63
VMS1	YDR049W	FSF1	Q12029	327 aa	Known RBP	4.9	□□□□□ -1.63
VMS1	YDR049W	BNR1	P40450	1375 aa		4.89	□□□□□ -1.63
VMS1	YDR049W	PHO2	P07269	559 aa		4.89	□□□□□ -1.63
VMS1	YDR049W	MSI1	P13712	422 aa		4.89	□□□□□ -1.63
VMS1	YDR049W	CTS1	P29029	562 aa		4.89	□□□□□ -1.63
VMS1	YDR049W	YKL102C	P34249	101 aa		4.89	□□□□□ -1.63
VMS1	YDR049W	BAT1	P38891	393 aa	Known RBP	4.89	□□□□□ -1.63
VMS1	YDR049W	HMF1	P40037	129 aa	Known RBP	4.89	□□□□□ -1.63
VMS1	YDR049W	YAE1	P47118	141 aa	Predicted RBP	4.89	□□□□□ -1.63
VMS1	YDR049W	YNL046W	P53956	172 aa		4.89	□□□□□ -1.63
VMS1	YDR049W	CRZ1	P53968	678 aa		4.89	□□□□□ -1.63
VMS1	YDR049W	YTH1	Q06102	208 aa	Predicted RBP	4.89	□□□□□ -1.63
VMS1	YDR049W	SOL2	P37262	315 aa		4.88	□□□□□ -1.63
VMS1	YDR049W	YHL049C	P38722	271 aa		4.88	□□□□□ -1.63
VMS1	YDR049W	AIM2	P39721	246 aa		4.88	□□□□□ -1.63
VMS1	YDR049W	OST2	P46964	130 aa		4.88	□□□□□ -1.63
VMS1	YDR049W	GWT1	P47026	490 aa		4.88	□□□□□ -1.63
VMS1	YDR049W	YGL034C	P53186	121 aa		4.88	□□□□□ -1.63
VMS1	YDR049W	SLM2	P53955	656 aa		4.88	□□□□□ -1.63
VMS1	YDR049W	LSM3	P57743	89 aa	Known RBP	4.88	□□□□□ -1.63
VMS1	YDR049W	SDC1	Q03323	175 aa		4.88	□□□□□ -1.63
VMS1	YDR049W	DGA1	Q08650	418 aa		4.88	□□□□□ -1.63
VMS1	YDR049W	YCR024C-B	Q3E7Z8	88 aa		4.88	□□□□□ -1.63
VMS1	YDR049W	PCL1	P24867	279 aa		4.88	□□□□□ -1.63
VMS1	YDR049W	YBR062C	P38239	180 aa		4.88	□□□□□ -1.63
VMS1	YDR049W	AIM18	P38884	321 aa		4.88	□□□□□ -1.63
VMS1	YDR049W	TIM13	P53299	105 aa		4.88	□□□□□ -1.63
VMS1	YDR049W	PAL1	Q05518	499 aa	Known RBP	4.88	□□□□□ -1.63
VMS1	YDR049W	YOR186W	Q08560	144 aa		4.88	□□□□□ -1.63
VMS1	YDR049W	BI2	P03873	423 aa		4.87	□□□□□ -1.63
VMS1	YDR049W	SIR2	P06700	562 aa		4.87	□□□□□ -1.63
VMS1	YDR049W	PHO85	P17157	305 aa		4.87	□□□□□ -1.63
VMS1	YDR049W	CNB1	P25296	175 aa		4.87	□□□□□ -1.63
VMS1	YDR049W	STP22	P25604	385 aa		4.87	□□□□□ -1.63
VMS1	YDR049W	YPT31	P38555	223 aa	Known RBP	4.87	□□□□□ -1.63
VMS1	YDR049W	MIC19	P43594	170 aa		4.87	□□□□□ -1.63
VMS1	YDR049W	MRH4	P53166	561 aa		4.87	□□□□□ -1.63
VMS1	YDR049W	NRM1	P53718	249 aa		4.87	□□□□□ -1.63
VMS1	YDR049W	SMX3	P54999	86 aa	Predicted RBP	4.87	□□□□□ -1.63
VMS1	YDR049W	IRC15	Q02733	499 aa		4.87	□□□□□ -1.63
VMS1	YDR049W	CTL1	Q03220	320 aa	Known RBP	4.87	□□□□□ -1.63
VMS1	YDR049W	AIM36	Q03798	255 aa		4.87	□□□□□ -1.63
VMS1	YDR049W	MCH1	Q07376	486 aa		4.87	□□□□□ -1.63
VMS1	YDR049W	IES4	Q08561	116 aa		4.87	□□□□□ -1.63
VMS1	YDR049W	OSW1	Q08692	278 aa		4.87	□□□□□ -1.63
VMS1	YDR049W	PDR11	P40550	1411 aa		4.87	□□□□□ -1.63
VMS1	YDR049W	ADK1	P07170	222 aa	Known RBP	4.86	□□□□□ -1.63
VMS1	YDR049W	RPL23A	P0CX41	137 aa	Known RBP	4.86	□□□□□ -1.63
VMS1	YDR049W	RPL23B	P0CX42	137 aa	Known RBP	4.86	□□□□□ -1.63
VMS1	YDR049W	MRPL20	P22354	195 aa	Predicted RBP	4.86	□□□□□ -1.63
VMS1	YDR049W	ATG15	P25641	520 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	SNC2	P33328	115 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	MED6	P38782	295 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	YPL073C	P40323	161 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	YJL043W	P47053	257 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	XPT1	P47165	209 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	HHO1	P53551	258 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	MSA1	Q08471	629 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	YOR376W	Q08900	122 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	VMR1	P38735	1592 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	HAP2	P06774	265 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	YHL044W	P38727	235 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	RPA43	P46669	326 aa		4.86	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 24.6 ms