RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 ITGA4P13612 1032 aa28.81■■■□□ 2.2
MSX1-201ENST00000382723 KRT83P78385 493 aa28.81■■■□□ 2.2
MSX1-201ENST00000382723 LPPQ93052 612 aa28.81■■■□□ 2.2
MSX1-201ENST00000382723 IFIH1Q9BYX4 1025 aaKnown RBP28.81■■■□□ 2.2
MSX1-201ENST00000382723 TBXAS1P24557 533 aaPredicted RBP28.8■■■□□ 2.2
MSX1-201ENST00000382723 GJA8P48165 433 aa28.8■■■□□ 2.2
MSX1-201ENST00000382723 HACE1Q8IYU2 909 aa28.8■■■□□ 2.2
MSX1-201ENST00000382723 RNF169Q8NCN4 708 aa28.8■■■□□ 2.2
MSX1-201ENST00000382723 NIF3L1Q9GZT8 377 aa28.8■■■□□ 2.2
MSX1-201ENST00000382723 NXF1Q9UBU9 619 aaKnown RBP28.8■■■□□ 2.2
MSX1-201ENST00000382723 ZBTB6Q15916 424 aa28.79■■■□□ 2.2
MSX1-201ENST00000382723 SCARA5Q6ZMJ2 495 aa28.79■■■□□ 2.2
MSX1-201ENST00000382723 BEST2Q8NFU1 509 aa28.79■■■□□ 2.2
MSX1-201ENST00000382723 LZTFL1Q9NQ48 299 aa28.79■■■□□ 2.2
MSX1-201ENST00000382723 A0A087X0T9 212 aa28.79■■■□□ 2.2
MSX1-201ENST00000382723 FAM228BP0C875 321 aa28.79■■■□□ 2.2
MSX1-201ENST00000382723 RBP5P82980 135 aa28.79■■■□□ 2.2
MSX1-201ENST00000382723 TRIM60Q495X7 471 aa28.79■■■□□ 2.2
MSX1-201ENST00000382723 XKR4Q5GH76 650 aa28.79■■■□□ 2.2
MSX1-201ENST00000382723 TAF4BQ92750 862 aa28.79■■■□□ 2.2
MSX1-201ENST00000382723 ZFP42Q96MM3 310 aa28.79■■■□□ 2.2
MSX1-201ENST00000382723 ACP6Q9NPH0 428 aa28.79■■■□□ 2.2
MSX1-201ENST00000382723 TFR2Q9UP52 801 aa28.79■■■□□ 2.2
MSX1-201ENST00000382723 CLCN1P35523 988 aa28.78■■■□□ 2.2
MSX1-201ENST00000382723 WDR72Q3MJ13 1102 aa28.78■■■□□ 2.2
MSX1-201ENST00000382723 ANKRD33Q7Z3H0 272 aa28.78■■■□□ 2.2
MSX1-201ENST00000382723 KIAA1328Q86T90 577 aa28.78■■■□□ 2.2
MSX1-201ENST00000382723 POLIQ9UNA4 740 aa28.78■■■□□ 2.2
MSX1-201ENST00000382723 CITO14578 2027 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 DCDC2CA8MYV0 355 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 LCA5LO95447 670 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 COL6A1P12109 1028 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 KCNE1P15382 129 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 RAB27AP51159 221 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 SLC18A3Q16572 532 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 SLC47A2Q86VL8 602 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 VPS36Q86VN1 386 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 HPDLQ96IR7 371 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 UBQLN1Q9UMX0 589 aaKnown RBP28.77■■■□□ 2.2
MSX1-201ENST00000382723 PCDHB4Q9Y5E5 795 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 ACO1P21399 889 aaKnown RBP28.77■■■□□ 2.2
MSX1-201ENST00000382723 ATICP31939 592 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 MLH1P40692 756 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 TLE2Q04725 743 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 ZNF667Q5HYK9 610 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 SLC20A1Q8WUM9 679 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 PCDHA13Q9Y5I0 950 aa28.77■■■□□ 2.2
MSX1-201ENST00000382723 CD58P19256 250 aa28.76■■■□□ 2.19
MSX1-201ENST00000382723 PTPN14Q15678 1187 aa28.76■■■□□ 2.19
MSX1-201ENST00000382723 MRPL10Q7Z7H8 261 aaKnown RBP28.76■■■□□ 2.19
MSX1-201ENST00000382723 JAKMIP2Q96AA8 810 aa28.76■■■□□ 2.19
MSX1-201ENST00000382723 GAD1Q99259 594 aa28.76■■■□□ 2.19
MSX1-201ENST00000382723 TRAIPQ9BWF2 469 aa28.76■■■□□ 2.19
MSX1-201ENST00000382723 RALGAPA2Q2PPJ7 1873 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 A0A0U1RQF3 1178 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 GOLGA6L9A6NEM1 432 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 PITPNM1O00562 1244 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 PTGESO14684 152 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 CALCAP01258 141 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 WEE2P0C1S8 567 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 ASPAP45381 313 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 FAAP100Q0VG06 881 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 DNTTIP2Q5QJE6 756 aaKnown RBP28.75■■■□□ 2.19
MSX1-201ENST00000382723 AGMOQ6ZNB7 445 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 GLYCTKQ8IVS8 523 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 SEPT11Q9NVA2 429 aaKnown RBP28.75■■■□□ 2.19
MSX1-201ENST00000382723 ATP11BQ9Y2G3 1177 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 PPEF2O14830 753 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 NBNO60934 754 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 ABL1P00519 1130 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 TMEM270Q6UE05 265 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 NOP9Q86U38 636 aaKnown RBP28.75■■■□□ 2.19
MSX1-201ENST00000382723 PAWRQ96IZ0 340 aaKnown RBP28.75■■■□□ 2.19
MSX1-201ENST00000382723 AGPAT1Q99943 283 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 HIPK3Q9H422 1215 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 GOLGA2P5Q9HBQ8 144 aa28.75■■■□□ 2.19
MSX1-201ENST00000382723 DDX3XO00571 662 aaKnown RBP eCLIP28.74■■■□□ 2.192e-6■■■■■ 30.7
MSX1-201ENST00000382723 ZNF623O75123 536 aa28.74■■■□□ 2.19
MSX1-201ENST00000382723 MAGEA1P43355 309 aa28.74■■■□□ 2.19
MSX1-201ENST00000382723 ARHGAP29Q52LW3 1261 aa28.74■■■□□ 2.19
MSX1-201ENST00000382723 TAF3Q5VWG9 929 aa28.74■■■□□ 2.19
MSX1-201ENST00000382723 NYAP1Q6ZVC0 841 aa28.74■■■□□ 2.19
MSX1-201ENST00000382723 ANKLE1Q8NAG6 615 aa28.74■■■□□ 2.19
MSX1-201ENST00000382723 LNX1Q8TBB1 728 aaPredicted RBP28.74■■■□□ 2.19
MSX1-201ENST00000382723 EPS8L1Q8TE68 723 aa28.74■■■□□ 2.19
MSX1-201ENST00000382723 RPS6KC1Q96S38 1066 aa28.74■■■□□ 2.19
MSX1-201ENST00000382723 TSPAN18Q96SJ8 248 aa28.74■■■□□ 2.19
MSX1-201ENST00000382723 SYT11Q9BT88 431 aa28.74■■■□□ 2.19
MSX1-201ENST00000382723 PPP1R12CQ9BZL4 782 aa28.74■■■□□ 2.19
MSX1-201ENST00000382723 RCCD1A6NED2 376 aa28.73■■■□□ 2.19
MSX1-201ENST00000382723 XPOTO43592 962 aaKnown RBP28.73■■■□□ 2.19
MSX1-201ENST00000382723 CYP11B1P15538 503 aa28.73■■■□□ 2.19
MSX1-201ENST00000382723 ATF7P17544 494 aaPredicted RBP28.73■■■□□ 2.19
MSX1-201ENST00000382723 TNFAIP3P21580 790 aa28.73■■■□□ 2.19
MSX1-201ENST00000382723 RAP1GAPP47736 663 aa28.73■■■□□ 2.19
MSX1-201ENST00000382723 PDE6CP51160 858 aa28.73■■■□□ 2.19
MSX1-201ENST00000382723 AFF1P51825 1210 aaKnown RBP28.73■■■□□ 2.19
MSX1-201ENST00000382723 BMS1Q14692 1282 aaKnown RBP28.73■■■□□ 2.19
MSX1-201ENST00000382723 RTN4RL1Q86UN2 441 aaPredicted RBP28.73■■■□□ 2.19
MSX1-201ENST00000382723 RGS18Q9NS28 235 aa28.73■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms