RNA–Protein interactions for RNA: YIL076W

SEC28, Transcript of Epsilon-COP subunit of the coatomer, yeastyeast

Gene SEC28, Length 891 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC28YIL076W CUP1-1P0CX80 61 aa1.62□□□□□ -2.15
SEC28YIL076W CUP1-2P0CX81 61 aa1.62□□□□□ -2.15
SEC28YIL076W SCL1P21243 252 aaKnown RBP1.62□□□□□ -2.15
SEC28YIL076W PEX4P29340 183 aa1.62□□□□□ -2.15
SEC28YIL076W MOB1P40484 314 aa1.62□□□□□ -2.15
SEC28YIL076W YGL034CP53186 121 aa1.62□□□□□ -2.15
SEC28YIL076W SPP2Q02521 185 aa1.62□□□□□ -2.15
SEC28YIL076W NKP2Q06162 153 aa1.62□□□□□ -2.15
SEC28YIL076W YLR179CQ06252 201 aaKnown RBP1.62□□□□□ -2.15
SEC28YIL076W SME1Q12330 94 aaPredicted RBP1.62□□□□□ -2.15
SEC28YIL076W MRPL40P36534 297 aa1.61□□□□□ -2.15
SEC28YIL076W MRX3P38172 270 aa1.61□□□□□ -2.15
SEC28YIL076W YER135CP40082 130 aa1.61□□□□□ -2.15
SEC28YIL076W FIS1P40515 155 aa1.61□□□□□ -2.15
SEC28YIL076W ARC15P40518 154 aaRIP-Chip data1.61□□□□□ -2.15not detected
SEC28YIL076W YNL134CP53912 376 aaKnown RBP1.61□□□□□ -2.15
SEC28YIL076W FUS2Q05670 677 aa1.61□□□□□ -2.15
SEC28YIL076W RAD50P12753 1312 aa1.61□□□□□ -2.15
SEC28YIL076W GCN1P33892 2672 aaKnown RBP1.6□□□□□ -2.15
SEC28YIL076W YOL162WP0CF19 215 aa1.6□□□□□ -2.15
SEC28YIL076W BMH2P34730 273 aaKnown RBP1.6□□□□□ -2.15
SEC28YIL076W OPY1P38271 328 aa1.6□□□□□ -2.15
SEC28YIL076W DOG1P38774 246 aa1.6□□□□□ -2.15
SEC28YIL076W GAA1P39012 614 aa1.6□□□□□ -2.15
SEC28YIL076W MRPS8Q03799 155 aa1.6□□□□□ -2.15
SEC28YIL076W MRPL23Q12487 163 aaPredicted RBP1.6□□□□□ -2.15
SEC28YIL076W LAA1P39526 2014 aa1.6□□□□□ -2.15
SEC28YIL076W CSF1Q12150 2958 aa1.59□□□□□ -2.15
SEC28YIL076W Q0255P03881 472 aa1.59□□□□□ -2.15
SEC28YIL076W HAP2P06774 265 aa1.59□□□□□ -2.15
SEC28YIL076W COS8P38723 381 aa1.59□□□□□ -2.15
SEC28YIL076W BMT5P40493 336 aa1.59□□□□□ -2.15
SEC28YIL076W CIS3P47001 227 aa1.59□□□□□ -2.15
SEC28YIL076W MAL13P53338 473 aa1.59□□□□□ -2.15
SEC28YIL076W ATO3Q12359 275 aa1.59□□□□□ -2.15
SEC28YIL076W MSB2P32334 1306 aa1.59□□□□□ -2.16
SEC28YIL076W POL2P21951 2222 aaKnown RBP1.58□□□□□ -2.16
SEC28YIL076W MATALPHA2P0CY08 210 aa1.58□□□□□ -2.16
SEC28YIL076W HMLALPHA2P0CY09 210 aa1.58□□□□□ -2.16
SEC28YIL076W TCP1P12612 559 aaKnown RBP1.58□□□□□ -2.16
SEC28YIL076W MET16P18408 261 aaPredicted RBP1.58□□□□□ -2.16
SEC28YIL076W YKR045CP36138 183 aa1.58□□□□□ -2.16
SEC28YIL076W COA1P40452 197 aa1.58□□□□□ -2.16
SEC28YIL076W ARP5P53946 755 aa1.58□□□□□ -2.16
SEC28YIL076W CTF19Q02732 369 aa1.58□□□□□ -2.16
SEC28YIL076W SMD2Q06217 110 aaKnown RBP1.58□□□□□ -2.16
SEC28YIL076W AKR2Q12013 749 aa1.58□□□□□ -2.16
SEC28YIL076W FPR1P20081 114 aaKnown RBP1.57□□□□□ -2.16
SEC28YIL076W PEX34P25584 144 aa1.57□□□□□ -2.16
SEC28YIL076W YKL070WP36087 169 aa1.57□□□□□ -2.16
SEC28YIL076W SSH1P38353 490 aaKnown RBP1.57□□□□□ -2.16
SEC28YIL076W YHR125WP38831 101 aa1.57□□□□□ -2.16
SEC28YIL076W CTR2P38865 189 aa1.57□□□□□ -2.16
SEC28YIL076W PGA2P53903 129 aa1.57□□□□□ -2.16
SEC28YIL076W ALG11P53954 548 aaKnown RBP1.57□□□□□ -2.16
SEC28YIL076W YLR413WQ06689 675 aa1.57□□□□□ -2.16
SEC28YIL076W YPL119C-AQ3E751 87 aa1.57□□□□□ -2.16
SEC28YIL076W HFA1P32874 2273 aa1.57□□□□□ -2.16
SEC28YIL076W PRP8P33334 2413 aaKnown RBP1.57□□□□□ -2.16
SEC28YIL076W DSF1P0CX08 502 aa1.56□□□□□ -2.16
SEC28YIL076W YNR073CP0CX09 502 aa1.56□□□□□ -2.16
SEC28YIL076W SIP3P38717 1229 aa1.56□□□□□ -2.16
SEC28YIL076W CYT2Q00873 224 aa1.56□□□□□ -2.16
SEC28YIL076W BRR2P32639 2163 aaKnown RBP1.56□□□□□ -2.16
SEC28YIL076W TRA1P38811 3744 aa1.55□□□□□ -2.16
SEC28YIL076W DBP3P20447 523 aaKnown RBP1.55□□□□□ -2.16
SEC28YIL076W DSN1P40568 576 aa1.55□□□□□ -2.16
SEC28YIL076W YJR012CP47087 207 aa1.55□□□□□ -2.16
SEC28YIL076W YGR026WP53217 278 aa1.55□□□□□ -2.16
SEC28YIL076W MEU1Q07938 337 aaKnown RBP RIP-Chip data1.55□□□□□ -2.16not detected
SEC28YIL076W DCN1Q12395 269 aa1.55□□□□□ -2.16
SEC28YIL076W COX5AP00424 153 aa1.54□□□□□ -2.16
SEC28YIL076W VPS3P23643 1011 aa1.54□□□□□ -2.16
SEC28YIL076W MDH3P32419 343 aaKnown RBP RIP-Chip data1.54□□□□□ -2.16not detected
SEC28YIL076W KDX1P36005 433 aa1.54□□□□□ -2.16
SEC28YIL076W DDI1P40087 428 aa1.54□□□□□ -2.16
SEC28YIL076W PRM10P42946 383 aa1.54□□□□□ -2.16
SEC28YIL076W NOP13P53883 403 aaKnown RBP RIP-Chip data1.54□□□□□ -2.16not detected
SEC28YIL076W YMR279CQ03263 540 aa1.54□□□□□ -2.16
SEC28YIL076W GMC2Q06201 188 aa1.54□□□□□ -2.16
SEC28YIL076W GPM2Q12008 311 aa1.54□□□□□ -2.16
SEC28YIL076W GIS3Q12418 502 aa1.54□□□□□ -2.16
SEC28YIL076W MEC1P38111 2368 aa1.54□□□□□ -2.16
SEC28YIL076W MDH2P22133 377 aa1.53□□□□□ -2.16
SEC28YIL076W MSA2P36157 363 aa1.53□□□□□ -2.16
SEC28YIL076W YHR022CP38763 256 aa1.53□□□□□ -2.16
SEC28YIL076W VTC1P40046 129 aaRIP-Chip data1.53□□□□□ -2.16not detected
SEC28YIL076W GLE2P40066 365 aa1.53□□□□□ -2.16
SEC28YIL076W ERG10P41338 398 aaKnown RBP1.53□□□□□ -2.16
SEC28YIL076W ERG25P53045 309 aa1.53□□□□□ -2.16
SEC28YIL076W RTC4P53850 401 aa1.53□□□□□ -2.16
SEC28YIL076W NUP49Q02199 472 aa1.53□□□□□ -2.16
SEC28YIL076W OST6Q03723 332 aa1.53□□□□□ -2.16
SEC28YIL076W YDR124WQ04608 324 aa1.53□□□□□ -2.16
SEC28YIL076W YIL002W-AQ3E7Z5 69 aa1.53□□□□□ -2.16
SEC28YIL076W YBR056W-AI2HB52 66 aa1.52□□□□□ -2.17
SEC28YIL076W YLR462WO13556 202 aa1.52□□□□□ -2.17
SEC28YIL076W MSF1P08425 469 aa1.52□□□□□ -2.17
SEC28YIL076W SRX1P36077 127 aa1.52□□□□□ -2.17
SEC28YIL076W DSE2P38844 325 aa1.52□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 111.6 ms