RNA–Protein interactions for RNA: YGR009C

SEC9, Transcript of t-SNARE protein required for secretory vesicle-plasma membrane fusion, yeast

Gene SEC9, Length 1,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC9	YGR009C	ASH1	P34233	588 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	SRY1	P36007	326 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	MRPL28	P36527	147 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	LSM2	P38203	95 aa	Known RBP	4.36	□□□□□ -1.71
SEC9	YGR009C	YBR096W	P38256	230 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	LYS1	P38998	373 aa	RIP-Chip data	4.36	□□□□□ -1.71	not detected
SEC9	YGR009C	PEX7	P39108	375 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	FIS1	P40515	155 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	TAD2	P47058	250 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	BUL1	P48524	976 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	COQ5	P49017	307 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	UBC12	P52491	188 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	MDM34	P53083	459 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	TIM13	P53299	105 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	YNL010W	P53981	241 aa	Known RBP	4.36	□□□□□ -1.71
SEC9	YGR009C	AIM11	P87275	137 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	STP1	Q00947	519 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	YVH1	Q02256	364 aa	Known RBP	4.36	□□□□□ -1.71
SEC9	YGR009C	IRC15	Q02733	499 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	MRX11	Q03079	207 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	MSS11	Q03825	758 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	YLR030W	Q07967	263 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	THI21	Q08975	551 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	FRE7	Q12333	620 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	MHT1	Q12525	324 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	RPL13A	Q12690	199 aa	Predicted RBP	4.36	□□□□□ -1.71
SEC9	YGR009C	NUP159	P40477	1460 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	TPK3	P05986	398 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	ATP5	P09457	212 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	YOL163W	P0CF20	169 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	PBI2	P0CT04	75 aa	Known RBP	4.36	□□□□□ -1.71
SEC9	YGR009C	YER190C-B	P0CX94	160 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	YEL077W-A	P0CX95	160 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	YGR296C-B	P0CX96	160 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	YPL283W-B	P0CX97	160 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	YPR204C-A	P0CX98	160 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	TIR1	P10863	254 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	VAC17	P25591	423 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	HIS7	P33734	552 aa	Known RBP	4.36	□□□□□ -1.71
SEC9	YGR009C	YET1	P35723	206 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	MBA1	P38300	278 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	ECM14	P38836	430 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	MET30	P39014	640 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	AVT1	P47082	602 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	MRH4	P53166	561 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	YNR040W	P53736	256 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	YLR152C	P54072	576 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	SRT1	Q03175	343 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	YDR209C	Q03480	137 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	YMR087W	Q04299	284 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	SEN15	Q04675	128 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	STP3	Q05937	343 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	SNT309	Q06091	175 aa	Predicted RBP	4.36	□□□□□ -1.71
SEC9	YGR009C	YPR114W	Q06107	315 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	RDL2	Q08742	149 aa	Known RBP	4.36	□□□□□ -1.71
SEC9	YGR009C	RPL7B	Q12213	244 aa	Known RBP	4.36	□□□□□ -1.71
SEC9	YGR009C	PEX11	Q12462	236 aa		4.36	□□□□□ -1.71
SEC9	YGR009C	BGL2	P15703	313 aa	Known RBP	4.35	□□□□□ -1.71
SEC9	YGR009C	HYP2	P23301	157 aa	Known RBP	4.35	□□□□□ -1.71
SEC9	YGR009C	OAC1	P32332	324 aa		4.35	□□□□□ -1.71
SEC9	YGR009C	FMT1	P32785	401 aa		4.35	□□□□□ -1.71
SEC9	YGR009C	BCS1	P32839	456 aa		4.35	□□□□□ -1.71
SEC9	YGR009C	YBR241C	P38142	488 aa		4.35	□□□□□ -1.71
SEC9	YGR009C	CPR7	P47103	393 aa		4.35	□□□□□ -1.71
SEC9	YGR009C	YIP4	P53093	235 aa		4.35	□□□□□ -1.71
SEC9	YGR009C	YGR151C	P53287	111 aa		4.35	□□□□□ -1.71
SEC9	YGR009C	MRPL22	P53881	309 aa		4.35	□□□□□ -1.71
SEC9	YGR009C	GPI15	P53961	229 aa		4.35	□□□□□ -1.71
SEC9	YGR009C	LEE1	Q02799	301 aa	Known RBP	4.35	□□□□□ -1.71
SEC9	YGR009C	VBA1	Q04301	562 aa		4.35	□□□□□ -1.71
SEC9	YGR009C	INM2	Q05533	292 aa		4.35	□□□□□ -1.71
SEC9	YGR009C	YOL024W	Q08172	172 aa		4.35	□□□□□ -1.71
SEC9	YGR009C	PST1	Q12355	444 aa		4.35	□□□□□ -1.71
SEC9	YGR009C	YOR338W	Q99326	363 aa		4.35	□□□□□ -1.71
SEC9	YGR009C	RPL11A	P0C0W9	174 aa	Known RBP	4.34	□□□□□ -1.71
SEC9	YGR009C	BAR1	P12630	587 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	ANB1	P19211	157 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	RPB5	P20434	215 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	POP5	P28005	173 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	PRE2	P30656	287 aa	Known RBP	4.34	□□□□□ -1.71
SEC9	YGR009C	MET22	P32179	357 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	ECM33	P38248	429 aa	Known RBP	4.34	□□□□□ -1.71
SEC9	YGR009C	YBR090C	P38253	122 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	DBP8	P38719	431 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	CEM1	P39525	442 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	TIS11	P47977	285 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	PRM8	P53174	237 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	CPR8	P53728	308 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	YNR048W	P53740	393 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	PDR17	P53844	350 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	NUP53	Q03790	475 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	UPS3	Q04006	179 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	COQ9	Q05779	260 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	HEM25	Q07534	307 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	MCP1	Q12106	302 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	PRR2	Q12310	699 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	ICT1	Q12385	394 aa		4.34	□□□□□ -1.71
SEC9	YGR009C	RPL11B	Q3E757	174 aa	Predicted RBP	4.34	□□□□□ -1.71
SEC9	YGR009C	RPL14B	P38754	138 aa	Known RBP	4.34	□□□□□ -1.71
SEC9	YGR009C	TRR2	P38816	342 aa		4.34	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 46.6 ms