RNA–Protein interactions for RNA: YBR160W

CDC28, Transcript of Cyclin-dependent kinase (CDK) catalytic subunit, yeast

Gene CDC28, Length 897 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC28	YBR160W	GPI14	P47088	403 aa	Known RBP	4.37	□□□□□ -1.71
CDC28	YBR160W	SGF73	P53165	657 aa		4.37	□□□□□ -1.71
CDC28	YBR160W	PKP2	P53170	491 aa		4.37	□□□□□ -1.71
CDC28	YBR160W	YGR250C	P53316	781 aa	Known RBP	4.37	□□□□□ -1.71
CDC28	YBR160W	CTF19	Q02732	369 aa		4.37	□□□□□ -1.71
CDC28	YBR160W	ATG21	Q02887	496 aa		4.37	□□□□□ -1.71
CDC28	YBR160W	SMA2	Q04658	369 aa		4.37	□□□□□ -1.71
CDC28	YBR160W	YMR253C	Q04835	414 aa		4.37	□□□□□ -1.71
CDC28	YBR160W	PML1	Q07930	204 aa	Predicted RBP	4.37	□□□□□ -1.71
CDC28	YBR160W	BRX1	Q08235	291 aa	Known RBP	4.37	□□□□□ -1.71
CDC28	YBR160W	YOR365C	Q08844	703 aa		4.37	□□□□□ -1.71
CDC28	YBR160W	YLR118C	Q12354	227 aa		4.37	□□□□□ -1.71
CDC28	YBR160W	ORT1	Q12375	292 aa		4.37	□□□□□ -1.71
CDC28	YBR160W	RPL13A	Q12690	199 aa	Predicted RBP	4.37	□□□□□ -1.71
CDC28	YBR160W	TPI1	P00942	248 aa	Known RBP	4.36	□□□□□ -1.71
CDC28	YBR160W	ADH3	P07246	375 aa	Known RBP	4.36	□□□□□ -1.71
CDC28	YBR160W	RPB3	P16370	318 aa	Known RBP	4.36	□□□□□ -1.71
CDC28	YBR160W	HNM1	P19807	563 aa		4.36	□□□□□ -1.71
CDC28	YBR160W	FEN2	P25621	512 aa	Known RBP	4.36	□□□□□ -1.71
CDC28	YBR160W	CDC50	P25656	391 aa		4.36	□□□□□ -1.71
CDC28	YBR160W	MTC7	P32633	139 aa		4.36	□□□□□ -1.71
CDC28	YBR160W	TIM12	P32830	109 aa		4.36	□□□□□ -1.71
CDC28	YBR160W	SSS1	P35179	80 aa		4.36	□□□□□ -1.71
CDC28	YBR160W	SUR2	P38992	349 aa		4.36	□□□□□ -1.71
CDC28	YBR160W	RFC2	P40348	353 aa		4.36	□□□□□ -1.71
CDC28	YBR160W	DLS1	P40366	167 aa		4.36	□□□□□ -1.71
CDC28	YBR160W	ADO1	P47143	340 aa	Known RBP	4.36	□□□□□ -1.71
CDC28	YBR160W	SCW4	P53334	386 aa	Known RBP	4.36	□□□□□ -1.71
CDC28	YBR160W	RSM10	Q03201	203 aa		4.36	□□□□□ -1.71
CDC28	YBR160W	MRPS17	Q03246	237 aa	Predicted RBP	4.36	□□□□□ -1.71
CDC28	YBR160W	HOF1	Q05080	669 aa		4.36	□□□□□ -1.71
CDC28	YBR160W	MRPL51	Q06090	140 aa	Predicted RBP	4.36	□□□□□ -1.71
CDC28	YBR160W	YFT2	Q06676	274 aa		4.36	□□□□□ -1.71
CDC28	YBR160W	FCF2	Q12035	217 aa	Predicted RBP	4.36	□□□□□ -1.71
CDC28	YBR160W	YOR114W	Q12219	294 aa		4.36	□□□□□ -1.71
CDC28	YBR160W	SET6	Q12529	373 aa		4.36	□□□□□ -1.71
CDC28	YBR160W	ODC2	Q99297	307 aa		4.36	□□□□□ -1.71
CDC28	YBR160W	MRPL44	P19956	98 aa		4.35	□□□□□ -1.71
CDC28	YBR160W	SCL1	P21243	252 aa	Known RBP	4.35	□□□□□ -1.71
CDC28	YBR160W	PET18	P25362	215 aa		4.35	□□□□□ -1.71
CDC28	YBR160W	FAA1	P30624	700 aa	Known RBP	4.35	□□□□□ -1.71
CDC28	YBR160W	TRS65	P32893	560 aa		4.35	□□□□□ -1.71
CDC28	YBR160W	SUI1	P32911	108 aa	Known RBP	4.35	□□□□□ -1.71
CDC28	YBR160W	TRM7	P38238	310 aa	Known RBP	4.35	□□□□□ -1.71
CDC28	YBR160W	EHT1	P38295	451 aa		4.35	□□□□□ -1.71
CDC28	YBR160W	YJR056C	P47115	236 aa		4.35	□□□□□ -1.71
CDC28	YBR160W	YGL185C	P53100	379 aa		4.35	□□□□□ -1.71
CDC28	YBR160W	ERG26	P53199	349 aa	Known RBP	4.35	□□□□□ -1.71
CDC28	YBR160W	YNR062C	P53748	327 aa		4.35	□□□□□ -1.71
CDC28	YBR160W	ATG4	P53867	494 aa		4.35	□□□□□ -1.71
CDC28	YBR160W	BUD25	P85052	153 aa		4.35	□□□□□ -1.71
CDC28	YBR160W	PNG1	Q02890	363 aa		4.35	□□□□□ -1.71
CDC28	YBR160W	TMA23	Q03525	211 aa		4.35	□□□□□ -1.71
CDC28	YBR160W	RPC11	Q04307	110 aa	Predicted RBP	4.35	□□□□□ -1.71
CDC28	YBR160W	HNT1	Q04344	158 aa	Known RBP	4.35	□□□□□ -1.71
CDC28	YBR160W	RAD28	Q12021	506 aa		4.35	□□□□□ -1.71
CDC28	YBR160W	YLR146W-A	Q2V2P1	62 aa		4.35	□□□□□ -1.71
CDC28	YBR160W	MEX67	Q99257	599 aa	Known RBP	4.35	□□□□□ -1.71
CDC28	YBR160W	BET2	P20133	325 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	PPH21	P23594	369 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	ADH7	P25377	361 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	PRE2	P30656	287 aa	Known RBP	4.34	□□□□□ -1.71
CDC28	YBR160W	MSN4	P33749	630 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	SPT10	P35208	640 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	SRP102	P36057	244 aa	Predicted RBP	4.34	□□□□□ -1.71
CDC28	YBR160W	YBR013C	P38215	129 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	SLZ1	P40167	298 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	BXI1	P48558	297 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	UBP8	P50102	471 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	UFD1	P53044	361 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	MGA1	P53050	456 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	MPP6	P53725	186 aa	Predicted RBP	4.34	□□□□□ -1.71
CDC28	YBR160W	YIF1	P53845	314 aa	Known RBP	4.34	□□□□□ -1.71
CDC28	YBR160W	YLR152C	P54072	576 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	APM1	Q00776	475 aa	Predicted RBP	4.34	□□□□□ -1.71
CDC28	YBR160W	CUE4	Q04201	117 aa	Predicted RBP	4.34	□□□□□ -1.71
CDC28	YBR160W	MRPL1	Q04599	285 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	BNA5	Q05979	453 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	CTR3	Q06686	241 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	RRT7	Q07829	113 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	YLR111W	Q12528	110 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	COA6	Q3E846	104 aa		4.34	□□□□□ -1.71
CDC28	YBR160W	RPL25	P04456	142 aa	Known RBP	4.33	□□□□□ -1.72
CDC28	YBR160W	CBP6	P07253	162 aa	Predicted RBP	4.33	□□□□□ -1.72
CDC28	YBR160W	NUP1	P20676	1076 aa		4.33	□□□□□ -1.72
CDC28	YBR160W	POP5	P28005	173 aa		4.33	□□□□□ -1.72
CDC28	YBR160W	LAC1	P28496	418 aa		4.33	□□□□□ -1.72
CDC28	YBR160W	MDH3	P32419	343 aa	Known RBP RIP-Chip data	4.33	□□□□□ -1.72	not detected
CDC28	YBR160W	SRB5	P32585	307 aa		4.33	□□□□□ -1.72
CDC28	YBR160W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	4.33	□□□□□ -1.72	not detected
CDC28	YBR160W	MDL1	P33310	695 aa		4.33	□□□□□ -1.72
CDC28	YBR160W	SNC2	P33328	115 aa		4.33	□□□□□ -1.72
CDC28	YBR160W	YNK1	P36010	153 aa	Known RBP	4.33	□□□□□ -1.72
CDC28	YBR160W	GPX1	P36014	167 aa		4.33	□□□□□ -1.72
CDC28	YBR160W	MRPS9	P38120	278 aa		4.33	□□□□□ -1.72
CDC28	YBR160W	TRS20	P38334	175 aa		4.33	□□□□□ -1.72
CDC28	YBR160W	ANS1	P38832	159 aa		4.33	□□□□□ -1.72
CDC28	YBR160W	YJL193W	P39542	402 aa		4.33	□□□□□ -1.72
CDC28	YBR160W	FLX1	P40464	311 aa		4.33	□□□□□ -1.72
CDC28	YBR160W	TAX4	P47030	604 aa		4.33	□□□□□ -1.72

Retrieved 100 of 5,963 RNA–protein pairs in 109 ms