RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS1	YKR001C	YDR157W	A0A023PZE8	133 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	TY1A-DR4	O74302	440 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	ILV5	P06168	395 aa	Known RBP	4.98	□□□□□ -1.61
VPS1	YKR001C	CYC3	P06182	269 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	RHO2	P06781	192 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	TY1A-A	P0CX57	440 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	TY1A-PR1	P0CX58	440 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	TY1A-OR	P0CX59	440 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	TY1A-PR2	P0CX60	440 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	TY1A-DR5	P0CX65	440 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	TY1A-ER2	P0CX66	440 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	TY1A-GR3	P0CX67	440 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	TY1A-LR1	P0CX68	440 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	TY1A-MR2	P0CX69	440 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	SNF5	P18480	905 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	YJU3	P28321	313 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	MSK1	P32048	576 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	ARP2	P32381	391 aa	Known RBP	4.98	□□□□□ -1.61
VPS1	YKR001C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.98	□□□□□ -1.61	not detected
VPS1	YKR001C	CAT2	P32796	670 aa	Known RBP	4.98	□□□□□ -1.61
VPS1	YKR001C	SCD5	P34758	872 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	QDR3	P38227	689 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	MBA1	P38300	278 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	RRP4	P38792	359 aa	Known RBP	4.98	□□□□□ -1.61
VPS1	YKR001C	ARG2	P40360	574 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	GTS1	P40956	396 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	RPA43	P46669	326 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	YJR012C	P47087	207 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	TY1A-JR2	P47099	440 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	TY1A-DR1	Q03856	440 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	TY1A-ML1	Q04706	440 aa	Known RBP	4.98	□□□□□ -1.61
VPS1	YKR001C	GAL83	Q04739	417 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.98	□□□□□ -1.61	not detected
VPS1	YKR001C	TY1A-NL2	Q12470	440 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	TY1A-GR2	Q12485	440 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	RMD5	Q12508	421 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	BI3	Q9ZZW7	517 aa		4.98	□□□□□ -1.61
VPS1	YKR001C	COX2	P00410	251 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	COX3	P00420	269 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	COX5B	P00425	151 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	PHO80	P20052	293 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	YEF1	P32622	495 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	HIS7	P33734	552 aa	Known RBP	4.97	□□□□□ -1.61
VPS1	YKR001C	GMH1	P36125	273 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	TRM7	P38238	310 aa	Known RBP	4.97	□□□□□ -1.61
VPS1	YKR001C	YHR035W	P38769	630 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	YAL037W	P39728	267 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	SDP1	P40479	209 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	ROG1	P53118	685 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	USE1	P53146	245 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	ECM9	Q02202	377 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	CAB5	Q03941	241 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	EMG1	Q06287	252 aa	Known RBP	4.97	□□□□□ -1.61
VPS1	YKR001C	NDD1	Q08887	554 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	TFC7	Q12415	435 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	RPP1B	P10622	106 aa	Known RBP	4.97	□□□□□ -1.61
VPS1	YKR001C	ARF2	P19146	181 aa	Known RBP	4.97	□□□□□ -1.61
VPS1	YKR001C	PPH21	P23594	369 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	PMI40	P29952	429 aa	Known RBP	4.97	□□□□□ -1.61
VPS1	YKR001C	SRB6	P32570	121 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	UTR2	P32623	467 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	FRE2	P36033	711 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	IRS4	P36115	615 aa	Known RBP	4.97	□□□□□ -1.61
VPS1	YKR001C	OMA1	P36163	345 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	YMC2	P38087	329 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	YBR053C	P38235	358 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	YBR285W	P38354	144 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	HIS2	P38635	335 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	DOG2	P38773	246 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	YJL107C	P42947	387 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	GWT1	P47026	490 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	NUP57	P48837	541 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	STR3	P53101	465 aa	Known RBP	4.97	□□□□□ -1.61
VPS1	YKR001C	DAD3	P69850	94 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	YPL067C	Q02754	198 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	ELC1	Q03071	99 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	SPG3	Q04398	127 aa	Predicted RBP	4.97	□□□□□ -1.61
VPS1	YKR001C	SEC13	Q04491	297 aa	Known RBP	4.97	□□□□□ -1.61
VPS1	YKR001C	ADH6	Q04894	360 aa	Known RBP	4.97	□□□□□ -1.61
VPS1	YKR001C	MRPL51	Q06090	140 aa	Predicted RBP	4.97	□□□□□ -1.61
VPS1	YKR001C	YLL056C	Q12177	298 aa		4.97	□□□□□ -1.61
VPS1	YKR001C	PST2	Q12335	198 aa	Known RBP	4.97	□□□□□ -1.61
VPS1	YKR001C	CYC7	P00045	113 aa		4.96	□□□□□ -1.62
VPS1	YKR001C	CDC4	P07834	779 aa		4.96	□□□□□ -1.62
VPS1	YKR001C	EXO70	P19658	623 aa		4.96	□□□□□ -1.62
VPS1	YKR001C	RAD23	P32628	398 aa	Known RBP	4.96	□□□□□ -1.62
VPS1	YKR001C	YEA6	P39953	335 aa		4.96	□□□□□ -1.62
VPS1	YKR001C	GAT2	P40209	560 aa		4.96	□□□□□ -1.62
VPS1	YKR001C	PTR3	P43606	678 aa		4.96	□□□□□ -1.62
VPS1	YKR001C	SKP1	P52286	194 aa		4.96	□□□□□ -1.62
VPS1	YKR001C	MGA1	P53050	456 aa		4.96	□□□□□ -1.62
VPS1	YKR001C	TAD1	P53065	400 aa		4.96	□□□□□ -1.62
VPS1	YKR001C	YGR151C	P53287	111 aa		4.96	□□□□□ -1.62
VPS1	YKR001C	GTR2	P53290	341 aa		4.96	□□□□□ -1.62
VPS1	YKR001C	ABF2	Q02486	183 aa		4.96	□□□□□ -1.62
VPS1	YKR001C	ATG21	Q02887	496 aa		4.96	□□□□□ -1.62
VPS1	YKR001C	GIP3	Q03016	1276 aa		4.96	□□□□□ -1.62
VPS1	YKR001C	YFH1	Q07540	174 aa		4.96	□□□□□ -1.62
VPS1	YKR001C	ALG6	Q12001	544 aa	Known RBP	4.96	□□□□□ -1.62
VPS1	YKR001C	HRP1	Q99383	534 aa	Known RBP	4.96	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 113.9 ms