RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W SET6Q12529 373 aa3.93□□□□□ -1.78
SSH4YKL124W Q0142Q9ZZW4 58 aa3.93□□□□□ -1.78
SSH4YKL124W RPL24AP04449 155 aaKnown RBP3.92□□□□□ -1.78
SSH4YKL124W PET9P18239 318 aaKnown RBP3.92□□□□□ -1.78
SSH4YKL124W GAS1P22146 559 aaKnown RBP3.92□□□□□ -1.78
SSH4YKL124W HSP30P25619 332 aa3.92□□□□□ -1.78
SSH4YKL124W SAC1P32368 623 aaKnown RBP3.92□□□□□ -1.78
SSH4YKL124W AST1P35183 429 aa3.92□□□□□ -1.78
SSH4YKL124W SRP102P36057 244 aaPredicted RBP3.92□□□□□ -1.78
SSH4YKL124W DTR1P38125 572 aa3.92□□□□□ -1.78
SSH4YKL124W RTS2P40962 232 aa3.92□□□□□ -1.78
SSH4YKL124W IDS2P46958 469 aa3.92□□□□□ -1.78
SSH4YKL124W FMP33P46998 180 aa3.92□□□□□ -1.78
SSH4YKL124W BAT2P47176 376 aaKnown RBP3.92□□□□□ -1.78
SSH4YKL124W SYF2P53277 215 aaPredicted RBP3.92□□□□□ -1.78
SSH4YKL124W MRPL50P53724 139 aa3.92□□□□□ -1.78
SSH4YKL124W YML108WQ03759 105 aa3.92□□□□□ -1.78
SSH4YKL124W ACL4Q03771 387 aa3.92□□□□□ -1.78
SSH4YKL124W RAF1Q06891 181 aa3.92□□□□□ -1.78
SSH4YKL124W MHF1Q3E835 90 aa3.92□□□□□ -1.78
SSH4YKL124W YAL064W-BO13512 126 aa3.92□□□□□ -1.78
SSH4YKL124W SCEIP03882 235 aa3.92□□□□□ -1.78
SSH4YKL124W RPL27AP0C2H6 136 aaKnown RBP3.92□□□□□ -1.78
SSH4YKL124W RPL27BP0C2H7 136 aaKnown RBP3.92□□□□□ -1.78
SSH4YKL124W PMR1P13586 950 aa3.92□□□□□ -1.78
SSH4YKL124W RPL3P14126 387 aaKnown RBP3.92□□□□□ -1.78
SSH4YKL124W YCL002CP25565 263 aa3.92□□□□□ -1.78
SSH4YKL124W PPA2P28239 310 aa3.92□□□□□ -1.78
SSH4YKL124W APE2P32454 952 aaKnown RBP3.92□□□□□ -1.78
SSH4YKL124W SBE22P38814 852 aa3.92□□□□□ -1.78
SSH4YKL124W SKN7P38889 622 aa3.92□□□□□ -1.78
SSH4YKL124W AVT7P40501 490 aa3.92□□□□□ -1.78
SSH4YKL124W DIM1P41819 318 aaKnown RBP3.92□□□□□ -1.78
SSH4YKL124W YAR1P46683 200 aa3.92□□□□□ -1.78
SSH4YKL124W PKP2P53170 491 aa3.92□□□□□ -1.78
SSH4YKL124W YGR168CP53293 376 aa3.92□□□□□ -1.78
SSH4YKL124W ASI1P54074 624 aa3.92□□□□□ -1.78
SSH4YKL124W SCS7Q03529 384 aa3.92□□□□□ -1.78
SSH4YKL124W CAB5Q03941 241 aa3.92□□□□□ -1.78
SSH4YKL124W YMR226CQ05016 267 aaKnown RBP3.92□□□□□ -1.78
SSH4YKL124W SNT309Q06091 175 aaPredicted RBP3.92□□□□□ -1.78
SSH4YKL124W GEP3Q08622 556 aa3.92□□□□□ -1.78
SSH4YKL124W YDL180WQ12301 547 aa3.92□□□□□ -1.78
SSH4YKL124W YOR343CQ12484 108 aa3.92□□□□□ -1.78
SSH4YKL124W FOL3Q12676 427 aaPredicted RBP3.92□□□□□ -1.78
SSH4YKL124W VCX1Q99385 411 aa3.92□□□□□ -1.78
SSH4YKL124W SOD2P00447 233 aa3.91□□□□□ -1.78
SSH4YKL124W TY1A-LR4P0C2I8 440 aaKnown RBP3.91□□□□□ -1.78
SSH4YKL124W TY1A-DR6P0CX70 440 aa3.91□□□□□ -1.78
SSH4YKL124W TY1A-ER1P0CX71 440 aa3.91□□□□□ -1.78
SSH4YKL124W TY1A-LR2P0CX72 440 aa3.91□□□□□ -1.78
SSH4YKL124W TY1A-PLP0CX73 440 aa3.91□□□□□ -1.78
SSH4YKL124W TY1A-JR1P0CX74 440 aa3.91□□□□□ -1.78
SSH4YKL124W TY1A-LR3P0CX75 440 aa3.91□□□□□ -1.78
SSH4YKL124W TY1A-ML2P0CX76 440 aa3.91□□□□□ -1.78
SSH4YKL124W DPM1P14020 267 aaKnown RBP3.91□□□□□ -1.78
SSH4YKL124W PDB1P32473 366 aaKnown RBP3.91□□□□□ -1.78
SSH4YKL124W GSH1P32477 678 aa3.91□□□□□ -1.78
SSH4YKL124W MTR2P34232 184 aaKnown RBP3.91□□□□□ -1.78
SSH4YKL124W CMC1P36064 111 aa3.91□□□□□ -1.78
SSH4YKL124W TAT1P38085 619 aa3.91□□□□□ -1.78
SSH4YKL124W YGL204CP53089 101 aa3.91□□□□□ -1.78
SSH4YKL124W BUD9P53226 547 aa3.91□□□□□ -1.78
SSH4YKL124W LRS4Q04087 347 aaKnown RBP3.91□□□□□ -1.78
SSH4YKL124W TRI1Q05024 226 aa3.91□□□□□ -1.78
SSH4YKL124W COQ11Q05892 277 aa3.91□□□□□ -1.78
SSH4YKL124W DXO1Q06349 442 aa3.91□□□□□ -1.78
SSH4YKL124W SKI7Q08491 747 aaPredicted RBP3.91□□□□□ -1.78
SSH4YKL124W BTS1Q12051 335 aa3.91□□□□□ -1.78
SSH4YKL124W TY1A-GR1Q12085 440 aa3.91□□□□□ -1.78
SSH4YKL124W YLR108CQ12259 485 aa3.91□□□□□ -1.78
SSH4YKL124W DCP1Q12517 231 aaPredicted RBP3.91□□□□□ -1.78
SSH4YKL124W TY1A-PR3Q6Q5H1 440 aaKnown RBP3.91□□□□□ -1.78
SSH4YKL124W YBR182C-AQ8TGU6 64 aa3.91□□□□□ -1.78
SSH4YKL124W TY1A-OLQ92392 440 aaKnown RBP3.91□□□□□ -1.78
SSH4YKL124W COX2P00410 251 aa3.9□□□□□ -1.78
SSH4YKL124W YOL162WP0CF19 215 aa3.9□□□□□ -1.78
SSH4YKL124W SEC12P11655 471 aa3.9□□□□□ -1.78
SSH4YKL124W YCR101CP25607 182 aa3.9□□□□□ -1.78
SSH4YKL124W RAD23P32628 398 aaKnown RBP3.9□□□□□ -1.78
SSH4YKL124W SEC66P33754 206 aa3.9□□□□□ -1.78
SSH4YKL124W CBT1P36038 271 aaPredicted RBP3.9□□□□□ -1.78
SSH4YKL124W MRPL16P38064 232 aa3.9□□□□□ -1.78
SSH4YKL124W RPP1P38786 293 aa3.9□□□□□ -1.78
SSH4YKL124W SKO1Q02100 647 aa3.9□□□□□ -1.78
SSH4YKL124W STD1Q02794 444 aa3.9□□□□□ -1.78
SSH4YKL124W DML1Q03652 475 aa3.9□□□□□ -1.78
SSH4YKL124W YDR239CQ03780 787 aa3.9□□□□□ -1.78
SSH4YKL124W RSA3Q05942 220 aaKnown RBP3.9□□□□□ -1.78
SSH4YKL124W DTD1Q07648 150 aaKnown RBP3.9□□□□□ -1.78
SSH4YKL124W RSA1Q08932 381 aa3.9□□□□□ -1.78
SSH4YKL124W NCE102Q12207 173 aaRIP-Chip data3.9□□□□□ -1.78not detected
SSH4YKL124W SIA1Q12212 622 aa3.9□□□□□ -1.78
SSH4YKL124W YOR097CQ12274 175 aaPredicted RBP3.9□□□□□ -1.78
SSH4YKL124W URA3P03962 267 aa3.9□□□□□ -1.79
SSH4YKL124W SIR3P06701 978 aa3.9□□□□□ -1.79
SSH4YKL124W QCR2P07257 368 aa3.9□□□□□ -1.79
SSH4YKL124W RPB8P20436 146 aa3.9□□□□□ -1.79
SSH4YKL124W CNA1P23287 553 aa3.9□□□□□ -1.79
SSH4YKL124W FPS1P23900 669 aa3.9□□□□□ -1.79
Retrieved 100 of 5,963 RNA–protein pairs in 118.9 ms