RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 NUDT11Q96G61 164 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 GCM1Q9NP62 436 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 LANCL2Q9NS86 450 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.09□□□□□ -0.95
NUP54-215ENST00000514313 CALCOCO1Q9P1Z2 691 aa9.09□□□□□ -0.95
NUP54-215ENST00000514313 FEZ2Q9UHY8 353 aaPredicted RBP9.09□□□□□ -0.95
NUP54-215ENST00000514313 A0A1W2PPL8 197 aa9.08□□□□□ -0.96
NUP54-215ENST00000514313 ARIH2O95376 493 aa9.08□□□□□ -0.96
NUP54-215ENST00000514313 ITGB5P18084 799 aa9.08□□□□□ -0.96
NUP54-215ENST00000514313 MALP21145 153 aa9.08□□□□□ -0.96
NUP54-215ENST00000514313 TNFSF4P23510 183 aa9.08□□□□□ -0.96
NUP54-215ENST00000514313 KRT72Q14CN4 511 aa9.08□□□□□ -0.96
NUP54-215ENST00000514313 TRMT2AQ8IZ69 625 aaKnown RBP9.08□□□□□ -0.96
NUP54-215ENST00000514313 FBXO18Q8NFZ0 1043 aa9.08□□□□□ -0.96
NUP54-215ENST00000514313 ING3Q9NXR8 418 aa9.08□□□□□ -0.96
NUP54-215ENST00000514313 GPRC5DQ9NZD1 345 aa9.08□□□□□ -0.96
NUP54-215ENST00000514313 SNX13Q9Y5W8 968 aa9.08□□□□□ -0.96
NUP54-215ENST00000514313 PMF1-BGLAPU3KQ54 211 aa9.08□□□□□ -0.96
NUP54-215ENST00000514313 CARMIL2Q6F5E8 1435 aa9.07□□□□□ -0.96
NUP54-215ENST00000514313 CCDC189A1A4V9 331 aa9.07□□□□□ -0.96
NUP54-215ENST00000514313 SEMA7AO75326 666 aa9.07□□□□□ -0.96
NUP54-215ENST00000514313 GPR32O75388 356 aa9.07□□□□□ -0.96
NUP54-215ENST00000514313 KITP10721 976 aa9.07□□□□□ -0.96
NUP54-215ENST00000514313 IL13P35225 146 aa9.07□□□□□ -0.96
NUP54-215ENST00000514313 WNT3AP56704 352 aa9.07□□□□□ -0.96
NUP54-215ENST00000514313 SESN2P58004 480 aaPredicted RBP9.07□□□□□ -0.96
NUP54-215ENST00000514313 ATP8B2P98198 1209 aa9.07□□□□□ -0.96
NUP54-215ENST00000514313 PCOLCEQ15113 449 aa9.07□□□□□ -0.96
NUP54-215ENST00000514313 ARTNQ5T4W7 220 aa9.07□□□□□ -0.96
NUP54-215ENST00000514313 REPS2Q8NFH8 660 aa9.07□□□□□ -0.96
NUP54-215ENST00000514313 CYFIP2Q96F07 1278 aa9.07□□□□□ -0.96
NUP54-215ENST00000514313 KIAA1683Q9H0B3 1180 aa9.07□□□□□ -0.96
NUP54-215ENST00000514313 TRMT13Q9NUP7 481 aaKnown RBP9.07□□□□□ -0.96
NUP54-215ENST00000514313 GPRC5BQ9NZH0 403 aa9.07□□□□□ -0.96
NUP54-215ENST00000514313 CPA4Q9UI42 421 aa9.07□□□□□ -0.96
NUP54-215ENST00000514313 AJAP1Q9UKB5 411 aaPredicted RBP9.07□□□□□ -0.96
NUP54-215ENST00000514313 USP19O94966 1318 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 C2orf78A6NCI8 922 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 NCK2O43639 380 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 NBNO60934 754 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 ITGA10O75578 1167 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 NPR1P16066 1061 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 DDCP20711 480 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 SLC7A1P30825 629 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 GUCY1A2P33402 732 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 CRHR1P34998 444 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 MTM1Q13496 603 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 DPP9Q86TI2 863 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 ZDHHC14Q8IZN3 488 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 PLA2G15Q8NCC3 412 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 KIAA1191Q96A73 305 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 CRB3Q9BUF7 120 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 SENP6Q9GZR1 1112 aaPredicted RBP9.06□□□□□ -0.96
NUP54-215ENST00000514313 KIAA1586Q9HCI6 787 aa9.06□□□□□ -0.96
NUP54-215ENST00000514313 SPATA6Q9NWH7 488 aaPredicted RBP9.06□□□□□ -0.96
NUP54-215ENST00000514313 NT5C1B-RDH14C9J2C7 533 aa9.05□□□□□ -0.96
NUP54-215ENST00000514313 MYO1FO00160 1098 aa9.05□□□□□ -0.96
NUP54-215ENST00000514313 FPR1P21462 350 aa9.05□□□□□ -0.96
NUP54-215ENST00000514313 PAX3P23760 479 aa9.05□□□□□ -0.96
NUP54-215ENST00000514313 PCSK1P29120 753 aa9.05□□□□□ -0.96
NUP54-215ENST00000514313 MRE11P49959 708 aa9.05□□□□□ -0.96
NUP54-215ENST00000514313 MEOX1P50221 254 aa9.05□□□□□ -0.96
NUP54-215ENST00000514313 BTKQ06187 659 aa9.05□□□□□ -0.96
NUP54-215ENST00000514313 ZNF543Q08ER8 600 aa9.05□□□□□ -0.96
NUP54-215ENST00000514313 TMEFF1Q8IYR6 380 aa9.05□□□□□ -0.96
NUP54-215ENST00000514313 SELENOOQ9BVL4 669 aa9.05□□□□□ -0.96
NUP54-215ENST00000514313 WDCPQ9H6R7 721 aa9.05□□□□□ -0.96
NUP54-215ENST00000514313 FAM184BQ9ULE4 1060 aa9.05□□□□□ -0.96
NUP54-215ENST00000514313 CTDP1Q9Y5B0 961 aaPredicted RBP9.05□□□□□ -0.96
NUP54-215ENST00000514313 PCDHA1Q9Y5I3 950 aa9.05□□□□□ -0.96
NUP54-215ENST00000514313 RBM8AQ9Y5S9 174 aaKnown RBP9.05□□□□□ -0.96
NUP54-215ENST00000514313 WNT10BO00744 389 aa9.04□□□□□ -0.96
NUP54-215ENST00000514313 RRADP55042 308 aa9.04□□□□□ -0.96
NUP54-215ENST00000514313 FLYWCH1Q4VC44 716 aa9.04□□□□□ -0.96
NUP54-215ENST00000514313 PPP1R3BQ86XI6 285 aa9.04□□□□□ -0.96
NUP54-215ENST00000514313 LIX1LQ8IVB5 337 aa9.04□□□□□ -0.96
NUP54-215ENST00000514313 DCBLD1Q8N8Z6 715 aa9.04□□□□□ -0.96
NUP54-215ENST00000514313 ANKRD42Q8N9B4 389 aa9.04□□□□□ -0.96
NUP54-215ENST00000514313 KATNBL1Q9H079 304 aa9.04□□□□□ -0.96
NUP54-215ENST00000514313 VPS11Q9H270 941 aa9.04□□□□□ -0.96
NUP54-215ENST00000514313 L2HGDHQ9H9P8 463 aa9.04□□□□□ -0.96
NUP54-215ENST00000514313 CERS4Q9HA82 394 aa9.04□□□□□ -0.96
NUP54-215ENST00000514313 TMEM140Q9NV12 185 aa9.04□□□□□ -0.96
NUP54-215ENST00000514313 OGDHLQ9ULD0 1010 aa9.04□□□□□ -0.96
NUP54-215ENST00000514313 PCDHA6Q9UN73 950 aa9.04□□□□□ -0.96
NUP54-215ENST00000514313 POM121BA6NF01 834 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 TBX3O15119 743 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 PIP5K1CO60331 668 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 BRAFP15056 766 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 TSHRP16473 764 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 RPL17P18621 184 aaKnown RBP9.03□□□□□ -0.96
NUP54-215ENST00000514313 ABCB4P21439 1286 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 SMARCA1P28370 1054 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 IL6STP40189 918 aaPredicted RBP9.03□□□□□ -0.96
NUP54-215ENST00000514313 HALP42357 657 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 KIR2DL3P43628 341 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 STT3AP46977 705 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 RAPGEF1Q13905 1077 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 ZNF827Q17R98 1081 aa9.03□□□□□ -0.96
NUP54-215ENST00000514313 TMEM95Q3KNT9 176 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms