RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	SPC3	Q12133	184 aa		3.21	□□□□□ -1.9
SSM4	YIL030C	FYV7	Q12247	151 aa		3.21	□□□□□ -1.9
SSM4	YIL030C	PRS5	Q12265	496 aa	Known RBP	3.21	□□□□□ -1.9
SSM4	YIL030C	ORT1	Q12375	292 aa		3.21	□□□□□ -1.9
SSM4	YIL030C	COA6	Q3E846	104 aa		3.21	□□□□□ -1.9
SSM4	YIL030C	YGL041W-A	P0C5N3	154 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	KIN3	P22209	435 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	PPH21	P23594	369 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	MDH3	P32419	343 aa	Known RBP RIP-Chip data	3.2	□□□□□ -1.9	not detected
SSM4	YIL030C	PUG1	P40100	303 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	GNA1	P43577	159 aa	Predicted RBP	3.2	□□□□□ -1.9
SSM4	YIL030C	MGA1	P53050	456 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	PKP2	P53170	491 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	SMM1	P53720	384 aa	Known RBP	3.2	□□□□□ -1.9
SSM4	YIL030C	SFB2	P53953	876 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	YMR210W	Q03649	449 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	YLR346C	Q06139	101 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	ATG33	Q06485	197 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	PIN2	Q12057	282 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	BGL2	P15703	313 aa	Known RBP	3.2	□□□□□ -1.9
SSM4	YIL030C	AHT1	P29589	182 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	GMH1	P36125	273 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	ATG8	P38182	117 aa	RIP-Chip data	3.2	□□□□□ -1.9	not detected
SSM4	YIL030C	RRP3	P38712	501 aa	Known RBP	3.2	□□□□□ -1.9
SSM4	YIL030C	WSS1	P38838	269 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	FAU1	P40099	211 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	VPS73	P53142	486 aa	Known RBP	3.2	□□□□□ -1.9
SSM4	YIL030C	SCW4	P53334	386 aa	Known RBP	3.2	□□□□□ -1.9
SSM4	YIL030C	RHO5	P53879	331 aa	Known RBP	3.2	□□□□□ -1.9
SSM4	YIL030C	MRPS17	Q03246	237 aa	Predicted RBP	3.2	□□□□□ -1.9
SSM4	YIL030C	AVO2	Q04749	426 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	TAZ1	Q06510	381 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	YDL177C	Q12257	170 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	MCT1	Q12283	360 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	ILV5	P06168	395 aa	Known RBP	3.2	□□□□□ -1.9
SSM4	YIL030C	STE7	P06784	515 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	CDC34	P14682	295 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	CNE1	P27825	502 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	TRS20	P38334	175 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	CAT5	P41735	233 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	QRI1	P43123	477 aa	Known RBP	3.2	□□□□□ -1.9
SSM4	YIL030C	PGA1	P53896	198 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	CYT2	Q00873	224 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	STP3	Q05937	343 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	AVO1	Q08236	1176 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	YOR365C	Q08844	703 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	FRE8	Q12209	686 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	SKS1	Q12505	502 aa		3.2	□□□□□ -1.9
SSM4	YIL030C	ATP5	P09457	212 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	RPB5	P20434	215 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	MDH2	P22133	377 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	YJU3	P28321	313 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	EFM1	P38732	585 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	RGA1	P39083	1007 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	YIR035C	P40579	254 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	HXT14	P42833	540 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	AIM25	P47140	327 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	COQ6	P53318	479 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	YMR082C	Q04276	118 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	AGE1	Q04412	482 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	YML053C	Q04978	212 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	QCR2	P07257	368 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	PEP4	P07267	405 aa	Known RBP	3.19	□□□□□ -1.9
SSM4	YIL030C	PRE4	P30657	266 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	RPF2	P36160	344 aa	Known RBP	3.19	□□□□□ -1.9
SSM4	YIL030C	SSO2	P39926	295 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	GZF3	P42944	551 aa	Known RBP	3.19	□□□□□ -1.9
SSM4	YIL030C	REX4	Q08237	289 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	YOR378W	Q08902	515 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	TIR4	Q12218	487 aa	Predicted RBP	3.19	□□□□□ -1.9
SSM4	YIL030C	MSF1	P08425	469 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	CDC12	P32468	407 aa	Known RBP	3.19	□□□□□ -1.9
SSM4	YIL030C	SGE1	P33335	543 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	ICS2	P38284	255 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	SHG1	P38337	142 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	AVT7	P40501	490 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	VEL1	P53058	206 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	PNC1	P53184	216 aa	Known RBP	3.19	□□□□□ -1.9
SSM4	YIL030C	ARL3	Q02804	198 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	YMR252C	Q04814	134 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	VMA5	P31412	392 aa	Known RBP	3.19	□□□□□ -1.9
SSM4	YIL030C	COS9	P36034	407 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	YBR096W	P38256	230 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	AIM3	P38266	947 aa	Known RBP	3.19	□□□□□ -1.9
SSM4	YIL030C	GPP1	P41277	250 aa	Known RBP	3.19	□□□□□ -1.9
SSM4	YIL030C	HNT1	Q04344	158 aa	Known RBP	3.19	□□□□□ -1.9
SSM4	YIL030C	YLR257W	Q06146	321 aa	Known RBP	3.19	□□□□□ -1.9
SSM4	YIL030C	SRF1	Q12516	437 aa		3.19	□□□□□ -1.9
SSM4	YIL030C	FUR4	P05316	633 aa	Known RBP	3.18	□□□□□ -1.9
SSM4	YIL030C	ARO4	P32449	370 aa	Known RBP	3.18	□□□□□ -1.9
SSM4	YIL030C	PTR2	P32901	601 aa		3.18	□□□□□ -1.9
SSM4	YIL030C	PAD1	P33751	242 aa	Known RBP RIP-Chip data	3.18	□□□□□ -1.9	not detected
SSM4	YIL030C	SHE2	P36068	246 aa	Known RBP RIP-Chip data	3.18	□□□□□ -1.9	not detected
SSM4	YIL030C	DRE2	P36152	348 aa		3.18	□□□□□ -1.9
SSM4	YIL030C	RTC2	P38279	296 aa		3.18	□□□□□ -1.9
SSM4	YIL030C	YHR122W	P38829	231 aa		3.18	□□□□□ -1.9
SSM4	YIL030C	RPL10	P41805	221 aa	Known RBP	3.18	□□□□□ -1.9
SSM4	YIL030C	MID1	P41821	548 aa		3.18	□□□□□ -1.9
SSM4	YIL030C	ALK1	P43633	760 aa	Known RBP	3.18	□□□□□ -1.9
SSM4	YIL030C	IBA57	P47158	497 aa		3.18	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 75.9 ms