RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W DDI2P0CH63 225 aa7.39□□□□□ -1.23
UFD1YGR048W DDI3P0CH64 225 aa7.39□□□□□ -1.23
UFD1YGR048W PDA1P16387 420 aaKnown RBP7.39□□□□□ -1.23
UFD1YGR048W AGP1P25376 633 aa7.39□□□□□ -1.23
UFD1YGR048W NTH1P32356 751 aa7.39□□□□□ -1.23
UFD1YGR048W ADD66P36040 267 aa7.39□□□□□ -1.23
UFD1YGR048W MRPL11P36521 249 aaPredicted RBP7.39□□□□□ -1.23
UFD1YGR048W POP2P39008 433 aa7.39□□□□□ -1.23
UFD1YGR048W PMT6P42934 759 aa7.39□□□□□ -1.23
UFD1YGR048W SCD6P45978 349 aaKnown RBP RIP-Chip data7.39□□□□□ -1.23not detected
UFD1YGR048W GWT1P47026 490 aa7.39□□□□□ -1.23
UFD1YGR048W MGA1P53050 456 aa7.39□□□□□ -1.23
UFD1YGR048W NCS6P53088 359 aa7.39□□□□□ -1.23
UFD1YGR048W SHY1P53266 389 aa7.39□□□□□ -1.23
UFD1YGR048W SPP2Q02521 185 aa7.39□□□□□ -1.23
UFD1YGR048W GOT1Q03554 138 aa7.39□□□□□ -1.23
UFD1YGR048W ARG7Q04728 441 aa7.39□□□□□ -1.23
UFD1YGR048W YLR179CQ06252 201 aaKnown RBP7.39□□□□□ -1.23
UFD1YGR048W LDB18Q07887 179 aa7.39□□□□□ -1.23
UFD1YGR048W YLR040CQ07988 224 aa7.39□□□□□ -1.23
UFD1YGR048W YLR118CQ12354 227 aa7.39□□□□□ -1.23
UFD1YGR048W YJR112W-AQ3E743 109 aa7.39□□□□□ -1.23
UFD1YGR048W TRS65P32893 560 aa7.38□□□□□ -1.23
UFD1YGR048W RMA1P36001 430 aaKnown RBP7.38□□□□□ -1.23
UFD1YGR048W LDH1P38139 375 aa7.38□□□□□ -1.23
UFD1YGR048W EFM1P38732 585 aa7.38□□□□□ -1.23
UFD1YGR048W SYS1P41544 203 aa7.38□□□□□ -1.23
UFD1YGR048W THI12P42883 340 aa7.38□□□□□ -1.23
UFD1YGR048W THI5P43534 340 aa7.38□□□□□ -1.23
UFD1YGR048W ASK10P48361 1146 aa7.38□□□□□ -1.23
UFD1YGR048W EXG2P52911 562 aa7.38□□□□□ -1.23
UFD1YGR048W MDM34P53083 459 aa7.38□□□□□ -1.23
UFD1YGR048W VPS28Q02767 242 aa7.38□□□□□ -1.23
UFD1YGR048W EKI1Q03764 534 aa7.38□□□□□ -1.23
UFD1YGR048W YDR415CQ04033 374 aaPredicted RBP7.38□□□□□ -1.23
UFD1YGR048W YLR225CQ05948 407 aaKnown RBP7.38□□□□□ -1.23
UFD1YGR048W YPR147CQ06522 304 aaKnown RBP7.38□□□□□ -1.23
UFD1YGR048W IPK1Q06667 281 aa7.38□□□□□ -1.23
UFD1YGR048W BER1Q06688 274 aaKnown RBP7.38□□□□□ -1.23
UFD1YGR048W PET20Q99373 253 aa7.38□□□□□ -1.23
UFD1YGR048W LAA1P39526 2014 aa7.38□□□□□ -1.23
UFD1YGR048W HIS1P00498 297 aaKnown RBP7.37□□□□□ -1.23
UFD1YGR048W GAL4P04386 881 aa7.37□□□□□ -1.23
UFD1YGR048W CDC9P04819 755 aa7.37□□□□□ -1.23
UFD1YGR048W CPR1P14832 162 aaKnown RBP7.37□□□□□ -1.23
UFD1YGR048W SCL1P21243 252 aaKnown RBP7.37□□□□□ -1.23
UFD1YGR048W EXG1P23776 448 aaKnown RBP7.37□□□□□ -1.23
UFD1YGR048W MTH1P35198 433 aa7.37□□□□□ -1.23
UFD1YGR048W TCD2P36101 447 aaKnown RBP7.37□□□□□ -1.23
UFD1YGR048W OPT1P40897 799 aa7.37□□□□□ -1.23
UFD1YGR048W MEP2P41948 499 aa7.37□□□□□ -1.23
UFD1YGR048W DLD2P46681 530 aaKnown RBP7.37□□□□□ -1.23
UFD1YGR048W YIF1P53845 314 aaKnown RBP7.37□□□□□ -1.23
UFD1YGR048W APJ1P53940 528 aa7.37□□□□□ -1.23
UFD1YGR048W SPC19Q03954 165 aa7.37□□□□□ -1.23
UFD1YGR048W UTP15Q04305 513 aaKnown RBP7.37□□□□□ -1.23
UFD1YGR048W YMR315WQ04869 349 aaKnown RBP7.37□□□□□ -1.23
UFD1YGR048W ERP1Q05359 219 aaKnown RBP7.37□□□□□ -1.23
UFD1YGR048W YLR455WQ06188 304 aa7.37□□□□□ -1.23
UFD1YGR048W CTR3Q06686 241 aa7.37□□□□□ -1.23
UFD1YGR048W LEA1Q08963 238 aaPredicted RBP7.37□□□□□ -1.23
UFD1YGR048W MRH1Q12117 320 aaPredicted RBP7.37□□□□□ -1.23
UFD1YGR048W BSC1Q12140 328 aa7.37□□□□□ -1.23
UFD1YGR048W PER33Q12144 273 aa7.37□□□□□ -1.23
UFD1YGR048W PMD1P32634 1753 aa7.37□□□□□ -1.23
UFD1YGR048W PAU19P0CE85 124 aa7.36□□□□□ -1.23
UFD1YGR048W PAU21P0CE86 164 aa7.36□□□□□ -1.23
UFD1YGR048W PAU22P0CE87 164 aa7.36□□□□□ -1.23
UFD1YGR048W VBA3P25594 458 aa7.36□□□□□ -1.23
UFD1YGR048W PAU3P25610 124 aa7.36□□□□□ -1.23
UFD1YGR048W IMG1P25626 169 aa7.36□□□□□ -1.23
UFD1YGR048W POT1P27796 417 aaKnown RBP RIP-Chip data7.36□□□□□ -1.23not detected
UFD1YGR048W POP5P28005 173 aa7.36□□□□□ -1.23
UFD1YGR048W LOT5P34234 306 aa7.36□□□□□ -1.23
UFD1YGR048W OMA1P36163 345 aa7.36□□□□□ -1.23
UFD1YGR048W ARP1P38696 384 aa7.36□□□□□ -1.23
UFD1YGR048W CHL4P38907 458 aa7.36□□□□□ -1.23
UFD1YGR048W AXL2P38928 823 aa7.36□□□□□ -1.23
UFD1YGR048W YEL028WP39989 153 aa7.36□□□□□ -1.23
UFD1YGR048W PAM16P42949 149 aa7.36□□□□□ -1.23
UFD1YGR048W NNF1P47149 201 aa7.36□□□□□ -1.23
UFD1YGR048W YGL204CP53089 101 aa7.36□□□□□ -1.23
UFD1YGR048W PEX31P53203 462 aa7.36□□□□□ -1.23
UFD1YGR048W HOL1P53389 586 aa7.36□□□□□ -1.23
UFD1YGR048W YVH1Q02256 364 aaKnown RBP7.36□□□□□ -1.23
UFD1YGR048W EST3Q03096 181 aa7.36□□□□□ -1.23
UFD1YGR048W YAP6Q03935 383 aa7.36□□□□□ -1.23
UFD1YGR048W SSL1Q04673 461 aaPredicted RBP7.36□□□□□ -1.23
UFD1YGR048W TPO4Q12256 659 aa7.36□□□□□ -1.23
UFD1YGR048W AIM45Q12480 344 aaKnown RBP7.36□□□□□ -1.23
UFD1YGR048W YKL033W-AQ86ZR7 236 aa7.36□□□□□ -1.23
UFD1YGR048W MRP10O75012 95 aa7.35□□□□□ -1.23
UFD1YGR048W PHO2P07269 559 aa7.35□□□□□ -1.23
UFD1YGR048W APE1P14904 514 aa7.35□□□□□ -1.23
UFD1YGR048W LSB5P25369 354 aa7.35□□□□□ -1.23
UFD1YGR048W BOS1P25385 244 aa7.35□□□□□ -1.23
UFD1YGR048W SFP1P32432 683 aa7.35□□□□□ -1.23
UFD1YGR048W PUB1P32588 453 aaKnown RBP RIP-Chip data7.35□□□□□ -1.23not detected
UFD1YGR048W FUI1P38196 639 aa7.35□□□□□ -1.23
UFD1YGR048W FIG1P38224 298 aa7.35□□□□□ -1.23
Retrieved 100 of 5,963 RNA–protein pairs in 87.8 ms