RNA–Protein interactions for RNA: YLR399C

BDF1, Transcript of Protein involved in transcription initiation, yeast

Gene BDF1, Length 2,061 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BDF1	YLR399C	FAA1	P30624	700 aa	Known RBP	11.3	□□□□□ -0.6
BDF1	YLR399C	DOA1	P36037	715 aa		11.3	□□□□□ -0.6
BDF1	YLR399C	GET2	P40056	285 aa		11.3	□□□□□ -0.6
BDF1	YLR399C	IDP2	P41939	412 aa		11.3	□□□□□ -0.6
BDF1	YLR399C	AAH1	P53909	347 aa		11.3	□□□□□ -0.6
BDF1	YLR399C	EST3	Q03096	181 aa		11.3	□□□□□ -0.6
BDF1	YLR399C	MRPS17	Q03246	237 aa	Predicted RBP	11.3	□□□□□ -0.6
BDF1	YLR399C	YMR253C	Q04835	414 aa		11.3	□□□□□ -0.6
BDF1	YLR399C	YPR114W	Q06107	315 aa		11.3	□□□□□ -0.6
BDF1	YLR399C	YOR365C	Q08844	703 aa		11.3	□□□□□ -0.6
BDF1	YLR399C	PDH1	Q12428	516 aa	Known RBP	11.3	□□□□□ -0.6
BDF1	YLR399C	TY2A-LR1	P0C2J4	438 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	TY2A-F	P0CX61	438 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	TY2A-GR2	P0CX62	438 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	TY2A-C	P25383	438 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	ORC2	P32833	620 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	YIL060W	P40519	144 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	YGL185C	P53100	379 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	TIM21	P53220	239 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	HCH1	P53834	153 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	EGD1	Q02642	157 aa	Known RBP	11.29	□□□□□ -0.6
BDF1	YLR399C	TY2A-DR2	Q03483	438 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	CIA1	Q05583	330 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	YOR385W	Q08909	290 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	TY2A-B	Q12260	438 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	TY2A-OR2	Q12293	438 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	TY2A-DR1	Q12392	438 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	TY2A-OR1	Q12439	438 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	ERG27	Q12452	347 aa	Known RBP	11.29	□□□□□ -0.6
BDF1	YLR399C	TY2A-DR3	Q99303	438 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	HIP1	P06775	603 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	GEX1	P25596	615 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	PAN3	P36102	679 aa	Predicted RBP	11.29	□□□□□ -0.6
BDF1	YLR399C	GEX2	P36173	615 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	YHR127W	P38833	243 aa	Known RBP	11.29	□□□□□ -0.6
BDF1	YLR399C	BUD25	P85052	153 aa		11.29	□□□□□ -0.6
BDF1	YLR399C	YEF1	P32622	495 aa		11.28	□□□□□ -0.6
BDF1	YLR399C	CLB6	P32943	380 aa		11.28	□□□□□ -0.6
BDF1	YLR399C	PIR1	Q03178	341 aa		11.28	□□□□□ -0.6
BDF1	YLR399C	CTL1	Q03220	320 aa	Known RBP	11.28	□□□□□ -0.6
BDF1	YLR399C	PAL1	Q05518	499 aa	Known RBP	11.28	□□□□□ -0.6
BDF1	YLR399C	TMA10	Q06177	86 aa		11.28	□□□□□ -0.6
BDF1	YLR399C	MMT2	Q08970	484 aa		11.28	□□□□□ -0.6
BDF1	YLR399C	ATX2	Q12067	313 aa		11.28	□□□□□ -0.6
BDF1	YLR399C	SKS1	Q12505	502 aa		11.28	□□□□□ -0.6
BDF1	YLR399C	RPL25	P04456	142 aa	Known RBP	11.28	□□□□□ -0.6
BDF1	YLR399C	SEC59	P20048	519 aa		11.28	□□□□□ -0.6
BDF1	YLR399C	SPS19	P32573	292 aa	Known RBP	11.28	□□□□□ -0.6
BDF1	YLR399C	MRPL28	P36527	147 aa		11.28	□□□□□ -0.6
BDF1	YLR399C	FIT1	Q04433	528 aa		11.28	□□□□□ -0.6
BDF1	YLR399C	YOR378W	Q08902	515 aa		11.28	□□□□□ -0.6
BDF1	YLR399C	FCF2	Q12035	217 aa	Predicted RBP	11.28	□□□□□ -0.6
BDF1	YLR399C	RPS21A	P0C0V8	87 aa	Known RBP	11.27	□□□□□ -0.61
BDF1	YLR399C	HAP4	P14064	554 aa		11.27	□□□□□ -0.61
BDF1	YLR399C	SFA1	P32771	386 aa		11.27	□□□□□ -0.61
BDF1	YLR399C	SNC2	P33328	115 aa		11.27	□□□□□ -0.61
BDF1	YLR399C	NIT3	P49954	291 aa		11.27	□□□□□ -0.61
BDF1	YLR399C	TOS2	P50078	622 aa		11.27	□□□□□ -0.61
BDF1	YLR399C	AVT4	P50944	713 aa		11.27	□□□□□ -0.61
BDF1	YLR399C	YGL114W	P53134	725 aa		11.27	□□□□□ -0.61
BDF1	YLR399C	PNC1	P53184	216 aa	Known RBP	11.27	□□□□□ -0.61
BDF1	YLR399C	FPK1	P53739	893 aa		11.27	□□□□□ -0.61
BDF1	YLR399C	RSF1	Q05043	376 aa		11.27	□□□□□ -0.61
BDF1	YLR399C	RRT7	Q07829	113 aa		11.27	□□□□□ -0.61
BDF1	YLR399C	PAA1	Q12447	191 aa	Known RBP	11.27	□□□□□ -0.61
BDF1	YLR399C	ADH3	P07246	375 aa	Known RBP	11.26	□□□□□ -0.61
BDF1	YLR399C	VMA16	P23968	213 aa		11.26	□□□□□ -0.61
BDF1	YLR399C	NTF2	P33331	125 aa	Known RBP	11.26	□□□□□ -0.61
BDF1	YLR399C	BNA4	P38169	460 aa		11.26	□□□□□ -0.61
BDF1	YLR399C	YJL068C	P40363	299 aa		11.26	□□□□□ -0.61
BDF1	YLR399C	YJR056C	P47115	236 aa		11.26	□□□□□ -0.61
BDF1	YLR399C	PRS5	Q12265	496 aa	Known RBP	11.26	□□□□□ -0.61
BDF1	YLR399C	TPI1	P00942	248 aa	Known RBP	11.26	□□□□□ -0.61
BDF1	YLR399C	DPM1	P14020	267 aa	Known RBP	11.26	□□□□□ -0.61
BDF1	YLR399C	OTU1	P43558	301 aa		11.26	□□□□□ -0.61
BDF1	YLR399C	PBP1	P53297	722 aa	Known RBP	11.26	□□□□□ -0.61
BDF1	YLR399C	COX9	P07255	59 aa		11.25	□□□□□ -0.61
BDF1	YLR399C	BET3	P36149	193 aa		11.25	□□□□□ -0.61
BDF1	YLR399C	SEH1	P53011	349 aa	Known RBP	11.25	□□□□□ -0.61
BDF1	YLR399C	SPC19	Q03954	165 aa		11.25	□□□□□ -0.61
BDF1	YLR399C	MED7	Q08278	222 aa		11.25	□□□□□ -0.61
BDF1	YLR399C	TGL5	Q12043	749 aa		11.25	□□□□□ -0.61
BDF1	YLR399C	TSA1	P34760	196 aa	Known RBP	11.24	□□□□□ -0.61
BDF1	YLR399C	DBP8	P38719	431 aa		11.24	□□□□□ -0.61
BDF1	YLR399C	VPS52	P39904	641 aa		11.24	□□□□□ -0.61
BDF1	YLR399C	PUS4	P48567	403 aa	Known RBP	11.24	□□□□□ -0.61
BDF1	YLR399C	ART5	P53244	586 aa	Known RBP	11.24	□□□□□ -0.61
BDF1	YLR399C	PNO1	Q99216	274 aa	Known RBP	11.24	□□□□□ -0.61
BDF1	YLR399C	FUN14	P18411	198 aa		11.24	□□□□□ -0.61
BDF1	YLR399C	YEL068C	P39977	110 aa		11.24	□□□□□ -0.61
BDF1	YLR399C	RNH70	P53331	553 aa		11.24	□□□□□ -0.61
BDF1	YLR399C	TY1A-H	P0C2I4	478 aa	Known RBP	11.23	□□□□□ -0.61
BDF1	YLR399C	ARF2	P19146	181 aa	Known RBP	11.23	□□□□□ -0.61
BDF1	YLR399C	PPH21	P23594	369 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	YHR097C	P38809	366 aa	Known RBP	11.23	□□□□□ -0.61
BDF1	YLR399C	TVP23	P38962	199 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	ICE2	P40499	491 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	NEO1	P40527	1151 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	YGL101W	P53144	215 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	YDR415C	Q04033	374 aa	Predicted RBP	11.23	□□□□□ -0.61

Retrieved 100 of 5,963 RNA–protein pairs in 18.3 ms